Wall clock time and date at job start Tue Mar 31 2020 19:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34225 * 117.00088 * 2 1 4 4 O 1.20825 * 120.00047 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99932 * 180.02562 * 3 2 1 6 6 O 1.42905 * 109.47264 * 180.02562 * 5 3 2 7 7 C 1.35897 * 117.00093 * 179.97438 * 6 5 3 8 8 C 1.38737 * 120.05547 * 359.72645 * 7 6 5 9 9 C 1.38149 * 119.94020 * 179.74326 * 8 7 6 10 10 C 1.38269 * 120.05599 * 0.51033 * 9 8 7 11 11 C 1.50701 * 119.94263 * 179.74419 * 10 9 8 12 12 H 1.09001 * 109.46850 * 160.02189 * 11 10 9 13 13 C 1.52997 * 109.46893 * 280.02189 * 11 10 9 14 14 N 1.46505 * 109.46774 * 40.02270 * 11 10 9 15 15 C 1.34771 * 119.99517 * 155.00209 * 14 11 10 16 16 O 1.21280 * 120.00439 * 359.97438 * 15 14 11 17 17 C 1.50705 * 120.00143 * 179.97438 * 15 14 11 18 18 C 1.52992 * 109.47247 * 179.97438 * 17 15 14 19 19 C 1.50710 * 109.46932 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99587 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00130 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99868 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00047 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46804 * 60.00611 * 23 21 19 25 25 H 1.48500 * 109.47151 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47393 * 300.00370 * 23 21 19 27 27 C 1.38265 * 120.10911 * 359.76477 * 10 9 8 28 28 C 1.38141 * 120.06229 * 359.97438 * 27 10 9 29 29 H 1.09001 * 109.47619 * 59.99850 * 1 2 3 30 30 H 1.08997 * 109.47680 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47439 * 299.99679 * 1 2 3 32 32 H 1.09001 * 109.47438 * 59.99841 * 5 3 2 33 33 H 1.09004 * 109.47113 * 300.00097 * 5 3 2 34 34 H 1.08000 * 120.02659 * 359.97438 * 8 7 6 35 35 H 1.07994 * 119.96900 * 180.27568 * 9 8 7 36 36 H 1.09009 * 109.46773 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.47123 * 299.99381 * 13 11 10 38 38 H 1.08992 * 109.47552 * 60.00299 * 13 11 10 39 39 H 0.96993 * 119.99917 * 334.99376 * 14 11 10 40 40 H 1.08995 * 109.47148 * 300.00336 * 17 15 14 41 41 H 1.09006 * 109.46824 * 59.99630 * 17 15 14 42 42 H 1.08998 * 109.47921 * 299.99978 * 18 17 15 43 43 H 1.08998 * 109.47385 * 60.00858 * 18 17 15 44 44 H 0.96997 * 119.99988 * 180.02562 * 22 21 19 45 45 H 1.08004 * 119.96780 * 179.97438 * 27 10 9 46 46 H 1.07995 * 120.03119 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 8 3.9715 2.6452 0.0001 7 6 5.3076 2.8934 0.0003 8 6 6.2102 1.8398 0.0055 9 6 7.5679 2.0949 0.0002 10 6 8.0275 3.3989 0.0005 11 6 9.5092 3.6743 0.0006 12 1 9.6899 4.6903 -0.3503 13 6 10.0563 3.5204 1.4211 14 7 10.1825 2.7237 -0.8878 15 6 11.3655 3.0460 -1.4472 16 8 11.8724 4.1232 -1.2156 17 6 12.0585 2.0681 -2.3607 18 6 13.3718 2.6762 -2.8569 19 6 14.0651 1.6979 -3.7699 20 1 13.6138 0.7385 -3.9759 21 6 15.2749 2.0280 -4.3430 22 7 15.8241 3.1965 -4.0925 23 14 16.1338 0.8157 -5.4751 24 1 15.2572 0.5158 -6.6356 25 1 17.4080 1.4064 -5.9577 26 1 16.4188 -0.4384 -4.7328 27 6 7.1300 4.4507 0.0011 28 6 5.7713 4.2010 0.0009 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.9557 0.7808 -0.8908 33 1 3.9564 0.7804 0.8892 34 1 5.8516 0.8211 0.0098 35 1 8.2708 1.2750 -0.0002 36 1 11.1281 3.7191 1.4211 37 1 9.5553 4.2277 2.0820 38 1 9.8756 2.5044 1.7720 39 1 9.7769 1.8623 -1.0733 40 1 12.2670 1.1472 -1.8161 41 1 11.4153 1.8484 -3.2129 42 1 13.1630 3.5969 -3.4017 43 1 14.0152 2.8961 -2.0050 44 1 16.6750 3.4289 -4.4959 45 1 7.4915 5.4684 0.0017 46 1 5.0708 5.0229 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293434055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:16 Heat of formation + Delta-G solvation = -164.820970 kcal Electronic energy + Delta-G solvation = -27198.629288 eV Core-core repulsion = 23052.735629 eV Total energy + Delta-G solvation = -4145.893659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.84822 -41.24832 -40.58816 -38.93673 -37.58002 -36.19895 -35.49559 -33.25658 -32.14829 -32.10300 -30.86087 -29.44884 -27.88401 -27.66977 -24.87030 -24.19956 -23.47794 -22.20434 -21.57202 -21.08265 -19.59182 -18.84460 -18.51295 -18.05426 -18.03273 -17.61198 -17.28957 -16.55881 -16.48618 -16.38368 -16.24020 -15.89919 -15.21516 -14.92682 -14.69044 -14.52632 -14.43606 -14.33078 -14.17986 -14.10753 -13.77346 -13.41222 -13.31943 -13.20121 -12.99714 -12.82013 -12.74380 -12.48911 -12.07200 -12.02325 -11.90263 -11.89884 -11.85851 -11.60437 -11.57361 -11.29340 -10.69328 -10.53826 -10.09695 -9.97589 -9.16975 -8.15462 -6.29522 0.31975 0.36768 0.96615 1.06572 1.43692 1.48140 1.55812 1.76971 2.26894 2.46754 2.50109 2.76362 3.17444 3.53331 3.62812 3.82179 3.91947 4.01289 4.04225 4.09413 4.26975 4.27390 4.30455 4.31405 4.43010 4.48274 4.55185 4.60523 4.64259 4.70251 4.76955 4.94231 5.05346 5.12657 5.18687 5.19965 5.25722 5.32697 5.45443 5.52887 5.66917 5.68491 5.71675 5.88483 6.20328 6.26967 6.56075 6.65352 6.89046 7.39287 7.41397 8.96847 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.001737 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.361891 B =16120.451275 C =17300.846841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.464 3.536 4 O -0.530 6.530 5 C 0.063 3.937 6 O -0.320 6.320 7 C 0.119 3.881 8 C -0.196 4.196 9 C -0.071 4.071 10 C -0.128 4.128 11 C 0.185 3.815 12 H 0.069 0.931 13 C -0.152 4.152 14 N -0.713 5.713 15 C 0.513 3.487 16 O -0.587 6.587 17 C -0.120 4.120 18 C 0.041 3.959 19 C -0.544 4.544 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.937 5.937 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.289 1.289 26 H -0.262 1.262 27 C -0.073 4.073 28 C -0.154 4.154 29 H 0.062 0.938 30 H 0.138 0.862 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.148 0.852 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.414 0.586 40 H 0.106 0.894 41 H 0.103 0.897 42 H -0.019 1.019 43 H -0.017 1.017 44 H 0.262 0.738 45 H 0.138 0.862 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.625 -10.558 12.113 35.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.308 3.692 4 O -0.418 6.418 5 C -0.012 4.012 6 O -0.234 6.234 7 C 0.074 3.926 8 C -0.214 4.214 9 C -0.090 4.090 10 C -0.128 4.128 11 C 0.081 3.919 12 H 0.088 0.912 13 C -0.210 4.210 14 N -0.367 5.367 15 C 0.302 3.698 16 O -0.466 6.466 17 C -0.159 4.159 18 C 0.004 3.996 19 C -0.582 4.582 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.215 1.215 26 H -0.186 1.186 27 C -0.092 4.092 28 C -0.173 4.173 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.183 0.817 35 H 0.166 0.834 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.252 0.748 40 H 0.124 0.876 41 H 0.121 0.879 42 H -0.001 1.001 43 H 0.001 0.999 44 H 0.071 0.929 45 H 0.156 0.844 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -31.538 -9.275 12.250 35.082 hybrid contribution 0.434 -0.107 -0.628 0.771 sum -31.104 -9.382 11.622 34.504 Atomic orbital electron populations 1.23626 0.73967 1.06131 1.02673 1.86448 1.25398 1.31344 1.83723 1.23488 0.91893 0.81699 0.72140 1.90724 1.67799 1.37679 1.45634 1.22217 0.87504 0.83061 1.08433 1.86033 1.21323 1.26748 1.89329 1.19080 0.81291 0.94694 0.97501 1.21501 0.93104 0.99479 1.07315 1.20977 0.95543 0.96076 0.96368 1.19780 0.93518 0.94622 1.04926 1.19658 0.88014 0.93615 0.90645 0.91242 1.22111 1.00348 1.03505 0.95034 1.46071 1.21232 1.20820 1.48627 1.21308 0.80939 0.87697 0.79895 1.90656 1.66372 1.26442 1.63168 1.21640 0.97513 0.98126 0.98654 1.18689 0.91719 0.94774 0.94441 1.21708 1.05496 1.02756 1.28223 0.90532 1.26133 0.98428 0.97269 0.98598 1.70175 1.18657 1.23356 1.45546 0.85379 0.77339 0.78660 0.78890 1.18771 1.21456 1.18626 1.20942 0.91605 0.99636 0.96992 1.20519 0.95673 0.94915 1.06169 0.91950 0.84430 0.91847 0.84542 0.84321 0.81736 0.83398 0.94348 0.90286 0.90617 0.74825 0.87576 0.87885 1.00054 0.99893 0.92935 0.84437 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.39 16 2 O -0.35 -3.80 10.56 -51.37 -0.54 -4.34 16 3 C 0.46 6.78 8.03 71.24 0.57 7.35 16 4 O -0.53 -12.33 16.25 28.40 0.46 -11.87 16 5 C 0.06 0.57 5.33 71.24 0.38 0.95 16 6 O -0.32 -5.48 9.67 -73.31 -0.71 -6.19 16 7 C 0.12 1.92 6.69 22.51 0.15 2.07 16 8 C -0.20 -2.28 9.04 22.37 0.20 -2.08 16 9 C -0.07 -0.98 9.05 22.26 0.20 -0.78 16 10 C -0.13 -2.35 4.96 -19.85 -0.10 -2.45 16 11 C 0.19 4.40 2.77 44.24 0.12 4.53 16 12 H 0.07 2.03 7.44 -2.39 -0.02 2.01 16 13 C -0.15 -3.34 9.46 71.98 0.68 -2.66 16 14 N -0.71 -18.42 5.03 -446.09 -2.24 -20.66 16 15 C 0.51 19.41 7.79 87.66 0.68 20.09 16 16 O -0.59 -28.46 15.64 -3.03 -0.05 -28.51 16 17 C -0.12 -4.70 5.64 29.85 0.17 -4.53 16 18 C 0.04 2.30 4.26 29.85 0.13 2.43 16 19 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 20 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 21 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 22 N -0.94 -59.57 13.29 21.45 0.28 -59.28 16 23 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 C -0.07 -1.34 9.66 22.25 0.21 -1.12 16 28 C -0.15 -2.76 9.99 22.37 0.22 -2.54 16 29 H 0.06 0.49 8.13 -2.39 -0.02 0.47 16 30 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.06 0.47 8.13 -2.39 -0.02 0.46 16 32 H 0.14 0.48 7.68 -2.39 -0.02 0.47 16 33 H 0.14 0.40 7.65 -2.38 -0.02 0.38 16 34 H 0.17 0.71 6.30 -2.91 -0.02 0.69 16 35 H 0.15 1.39 6.91 -2.91 -0.02 1.37 16 36 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.41 7.57 6.87 -92.71 -0.64 6.93 16 40 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.10 3.56 8.14 -2.38 -0.02 3.54 16 42 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 43 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 44 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.14 2.28 8.03 -2.91 -0.02 2.26 16 46 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -86.31 395.39 5.11 -81.20 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.36 Total: 11.40 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.52 Total: -7.88 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.96 Total: -79.94 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.84 Total: -50.91 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -86.31 5.11 -81.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293434055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.619 kcal (2) G-P(sol) polarization free energy of solvation -86.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds