Wall clock time and date at job start Tue Mar 31 2020 19:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99724 * 2 1 4 4 O 1.20828 * 120.00266 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99734 * 179.97438 * 3 2 1 6 6 O 1.42905 * 109.46972 * 179.97438 * 5 3 2 7 7 C 1.35905 * 116.99842 * 179.97438 * 6 5 3 8 8 C 1.38729 * 120.05486 * 359.72976 * 7 6 5 9 9 C 1.38146 * 119.94131 * 179.74173 * 8 7 6 10 10 C 1.38261 * 120.05612 * 0.50778 * 9 8 7 11 11 C 1.50703 * 119.94555 * 179.74006 * 10 9 8 12 12 H 1.08999 * 109.47397 * 200.02179 * 11 10 9 13 13 C 1.53000 * 109.46493 * 80.02399 * 11 10 9 14 14 N 1.46500 * 109.47285 * 320.03013 * 11 10 9 15 15 C 1.34776 * 119.99585 * 205.00065 * 14 11 10 16 16 O 1.21282 * 120.00341 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99915 * 179.97438 * 15 14 11 18 18 C 1.52994 * 109.47183 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47183 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99638 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00325 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00008 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99941 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47184 * 89.99807 * 23 21 19 25 25 H 1.48501 * 109.47242 * 209.99971 * 23 21 19 26 26 H 1.48506 * 109.46909 * 329.99630 * 23 21 19 27 27 C 1.38262 * 120.11084 * 359.77089 * 10 9 8 28 28 C 1.38145 * 120.05938 * 359.97279 * 27 10 9 29 29 H 1.09001 * 109.47004 * 300.00473 * 1 2 3 30 30 H 1.09003 * 109.46807 * 60.00347 * 1 2 3 31 31 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47103 * 59.99845 * 5 3 2 33 33 H 1.09000 * 109.47247 * 299.99723 * 5 3 2 34 34 H 1.08000 * 120.03286 * 359.97438 * 8 7 6 35 35 H 1.08005 * 119.97238 * 180.27362 * 9 8 7 36 36 H 1.09003 * 109.47766 * 299.99646 * 13 11 10 37 37 H 1.08998 * 109.47267 * 60.00199 * 13 11 10 38 38 H 1.09008 * 109.47026 * 179.97438 * 13 11 10 39 39 H 0.97000 * 120.00249 * 24.99290 * 14 11 10 40 40 H 1.09008 * 109.46947 * 300.00073 * 17 15 14 41 41 H 1.09006 * 109.46872 * 59.99322 * 17 15 14 42 42 H 1.08997 * 109.47574 * 299.99612 * 18 17 15 43 43 H 1.08999 * 109.47262 * 60.00340 * 18 17 15 44 44 H 0.97008 * 119.99734 * 180.02562 * 22 21 19 45 45 H 1.08008 * 119.97547 * 179.97438 * 27 10 9 46 46 H 1.07990 * 120.03151 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9715 2.6453 -0.0001 7 6 5.3076 2.8937 0.0008 8 6 6.2101 1.8401 0.0081 9 6 7.5678 2.0952 0.0036 10 6 8.0274 3.3992 0.0025 11 6 9.5091 3.6746 0.0036 12 1 9.6895 4.6907 0.3545 13 6 10.0573 3.5204 -1.4164 14 7 10.1818 2.7241 0.8926 15 6 11.3644 3.0467 1.4529 16 8 11.8718 4.1236 1.2209 17 6 12.0562 2.0693 2.3679 18 6 13.3698 2.6771 2.8639 19 6 14.0619 1.6994 3.7783 20 1 13.6098 0.7406 3.9853 21 6 15.2717 2.0293 4.3515 22 7 15.8754 1.1762 5.1499 23 14 16.0526 3.6884 3.9951 24 1 15.5888 4.6796 4.9989 25 1 17.5307 3.5655 4.0672 26 1 15.6590 4.1390 2.6359 27 6 7.1300 4.4509 0.0011 28 6 5.7713 4.2012 0.0002 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 5.8517 0.8213 0.0134 35 1 8.2709 1.2753 0.0048 36 1 9.8769 2.5043 -1.7674 37 1 9.5568 4.2275 -2.0779 38 1 11.1290 3.7201 -1.4159 39 1 9.7762 1.8628 1.0780 40 1 11.4121 1.8506 3.2197 41 1 12.2650 1.1479 1.8241 42 1 14.0137 2.8954 2.0120 43 1 13.1614 3.5985 3.4075 44 1 16.7265 1.4085 5.5535 45 1 7.4914 5.4687 0.0007 46 1 5.0707 5.0230 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293434059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:20 Heat of formation + Delta-G solvation = -137.851043 kcal Electronic energy + Delta-G solvation = -27259.290561 eV Core-core repulsion = 23114.566406 eV Total energy + Delta-G solvation = -4144.724155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26815 -40.52187 -39.49633 -38.14281 -36.97019 -35.16106 -33.46736 -31.80184 -31.55250 -30.99208 -30.20408 -28.77452 -27.47558 -26.13222 -23.86778 -23.47314 -21.96891 -21.34338 -20.51878 -19.73663 -19.00727 -17.93204 -17.57357 -17.52490 -17.23520 -16.43287 -16.17544 -16.05203 -15.53863 -15.20901 -15.01360 -14.31649 -14.21921 -14.06437 -13.99475 -13.81843 -13.60894 -13.29715 -13.27846 -12.88145 -12.76622 -12.61072 -12.55117 -12.21386 -12.00056 -11.47300 -11.43221 -11.40623 -11.33081 -11.11994 -10.97710 -10.93974 -10.15574 -10.03735 -9.77755 -9.37622 -9.25492 -9.16650 -8.94243 -8.50537 -8.49663 -6.02483 -4.01161 0.95869 1.00127 1.52397 1.52895 2.99625 3.12199 3.28632 3.38557 3.45095 3.54447 3.55982 3.99869 4.27743 4.32926 4.41907 4.44838 4.50367 4.51565 4.53285 4.62124 4.94356 4.96444 5.02651 5.13819 5.24776 5.28936 5.33169 5.42550 5.62531 5.62671 5.67657 5.80252 5.88009 5.94465 6.07819 6.09755 6.14077 6.25506 6.31933 6.67080 6.70606 6.84405 7.09292 7.37454 7.44523 7.75477 7.80789 8.50602 8.65993 9.00567 9.60697 11.10303 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.001754 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.087698 B =15955.154137 C =16839.017601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.069 3.931 6 O -0.296 6.296 7 C 0.123 3.877 8 C -0.204 4.204 9 C -0.072 4.072 10 C -0.118 4.118 11 C 0.184 3.816 12 H 0.094 0.906 13 C -0.157 4.157 14 N -0.737 5.737 15 C 0.512 3.488 16 O -0.539 6.539 17 C -0.123 4.123 18 C 0.002 3.998 19 C -0.525 4.525 20 H 0.072 0.928 21 C 0.069 3.931 22 N -0.904 5.904 23 Si 0.877 3.123 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.261 1.261 27 C -0.067 4.067 28 C -0.140 4.140 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.397 0.603 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.023 0.977 43 H 0.019 0.981 44 H 0.263 0.737 45 H 0.135 0.865 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.526 -2.325 -14.774 33.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.304 3.696 4 O -0.368 6.368 5 C -0.008 4.008 6 O -0.210 6.210 7 C 0.079 3.921 8 C -0.222 4.222 9 C -0.090 4.090 10 C -0.118 4.118 11 C 0.079 3.921 12 H 0.112 0.888 13 C -0.216 4.216 14 N -0.391 5.391 15 C 0.301 3.699 16 O -0.415 6.415 17 C -0.163 4.163 18 C -0.036 4.036 19 C -0.563 4.563 20 H 0.090 0.910 21 C -0.132 4.132 22 N -0.543 5.543 23 Si 0.704 3.296 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.185 1.185 27 C -0.086 4.086 28 C -0.158 4.158 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.152 0.848 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -30.380 -1.119 -14.827 33.823 hybrid contribution 0.063 0.128 0.019 0.144 sum -30.317 -0.990 -14.808 33.754 Atomic orbital electron populations 1.23367 0.75062 1.04207 1.02981 1.86446 1.24257 1.32255 1.84313 1.22981 0.90998 0.82004 0.73613 1.90739 1.66661 1.36188 1.43197 1.21859 0.88972 0.84212 1.05731 1.86070 1.21158 1.24482 1.89275 1.18947 0.81037 0.94415 0.97728 1.21204 0.93892 0.98298 1.08833 1.20749 0.94662 0.96439 0.97161 1.19963 0.95261 0.93507 1.03113 1.19665 0.86505 0.95155 0.90773 0.88759 1.22170 1.02196 1.01987 0.95223 1.46344 1.23053 1.20013 1.49734 1.21536 0.79866 0.88660 0.79885 1.90649 1.64751 1.24530 1.61584 1.21676 0.99419 0.97634 0.97526 1.19364 0.91132 0.96444 0.96687 1.21121 1.05081 1.02904 1.27200 0.90958 1.24970 0.96848 0.96951 0.94462 1.69917 1.17044 1.35725 1.31572 0.86796 0.78113 0.84658 0.79986 1.20263 1.21460 1.18516 1.20870 0.91483 0.99285 0.96921 1.20410 0.95720 0.94160 1.05557 0.91499 0.91549 0.87494 0.87392 0.87301 0.85130 0.85372 0.92433 0.91817 0.91423 0.76839 0.89649 0.89617 0.95816 0.96273 0.92740 0.84764 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.15 10.56 101.05 1.07 1.22 16 2 O -0.36 -2.24 10.57 -39.26 -0.41 -2.66 16 3 C 0.46 3.67 8.03 36.01 0.29 3.96 16 4 O -0.48 -5.59 16.25 -25.48 -0.41 -6.00 16 5 C 0.07 0.40 5.33 36.01 0.19 0.60 16 6 O -0.30 -2.75 9.67 -39.40 -0.38 -3.13 16 7 C 0.12 1.10 6.69 -39.22 -0.26 0.84 16 8 C -0.20 -1.53 9.04 -39.43 -0.36 -1.88 16 9 C -0.07 -0.59 9.05 -39.61 -0.36 -0.95 16 10 C -0.12 -1.12 4.96 -104.60 -0.52 -1.64 16 11 C 0.18 2.11 2.77 -69.08 -0.19 1.92 16 12 H 0.09 1.24 7.44 -51.93 -0.39 0.85 16 13 C -0.16 -1.69 9.46 37.16 0.35 -1.33 16 14 N -0.74 -9.46 5.03 -54.93 -0.28 -9.73 16 15 C 0.51 9.05 7.79 -10.98 -0.09 8.96 16 16 O -0.54 -11.62 15.65 5.56 0.09 -11.53 16 17 C -0.12 -2.34 5.64 -27.89 -0.16 -2.49 16 18 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 19 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 20 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 23 Si 0.88 22.59 27.47 -169.99 -4.67 17.92 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 27 C -0.07 -0.60 9.66 -39.61 -0.38 -0.99 16 28 C -0.14 -1.27 9.99 -39.43 -0.39 -1.66 16 29 H 0.07 0.28 8.13 -51.93 -0.42 -0.14 16 30 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 31 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.11 0.37 7.68 -51.93 -0.40 -0.03 16 33 H 0.11 0.41 7.65 -51.93 -0.40 0.01 16 34 H 0.13 0.62 6.30 -52.49 -0.33 0.29 16 35 H 0.13 0.86 6.91 -52.48 -0.36 0.50 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 39 H 0.40 4.01 6.86 -40.82 -0.28 3.73 16 40 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 43 H 0.02 0.49 7.52 -51.93 -0.39 0.10 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.13 1.02 8.03 -52.48 -0.42 0.60 16 46 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -37.38 391.79 -7.45 -44.83 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.73 Total: -1.52 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.33 Total: -6.88 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.50 Total: -36.93 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.12 Total: -23.32 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.38 -7.45 -44.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293434059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.025 kcal (2) G-P(sol) polarization free energy of solvation -37.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds