Wall clock time and date at job start Tue Mar 31 2020 19:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99724 * 2 1 4 4 O 1.20828 * 120.00266 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99734 * 179.97438 * 3 2 1 6 6 O 1.42905 * 109.46972 * 179.97438 * 5 3 2 7 7 C 1.35905 * 116.99842 * 179.97438 * 6 5 3 8 8 C 1.38729 * 120.05486 * 359.72976 * 7 6 5 9 9 C 1.38146 * 119.94131 * 179.74173 * 8 7 6 10 10 C 1.38261 * 120.05612 * 0.50778 * 9 8 7 11 11 C 1.50703 * 119.94555 * 179.74006 * 10 9 8 12 12 H 1.08999 * 109.47397 * 200.02179 * 11 10 9 13 13 C 1.53000 * 109.46493 * 80.02399 * 11 10 9 14 14 N 1.46500 * 109.47285 * 320.03013 * 11 10 9 15 15 C 1.34776 * 119.99585 * 205.00065 * 14 11 10 16 16 O 1.21282 * 120.00341 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99915 * 179.97438 * 15 14 11 18 18 C 1.52994 * 109.47183 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47183 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99638 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00325 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00008 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99941 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47184 * 89.99807 * 23 21 19 25 25 H 1.48501 * 109.47242 * 209.99971 * 23 21 19 26 26 H 1.48506 * 109.46909 * 329.99630 * 23 21 19 27 27 C 1.38262 * 120.11084 * 359.77089 * 10 9 8 28 28 C 1.38145 * 120.05938 * 359.97279 * 27 10 9 29 29 H 1.09001 * 109.47004 * 300.00473 * 1 2 3 30 30 H 1.09003 * 109.46807 * 60.00347 * 1 2 3 31 31 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47103 * 59.99845 * 5 3 2 33 33 H 1.09000 * 109.47247 * 299.99723 * 5 3 2 34 34 H 1.08000 * 120.03286 * 359.97438 * 8 7 6 35 35 H 1.08005 * 119.97238 * 180.27362 * 9 8 7 36 36 H 1.09003 * 109.47766 * 299.99646 * 13 11 10 37 37 H 1.08998 * 109.47267 * 60.00199 * 13 11 10 38 38 H 1.09008 * 109.47026 * 179.97438 * 13 11 10 39 39 H 0.97000 * 120.00249 * 24.99290 * 14 11 10 40 40 H 1.09008 * 109.46947 * 300.00073 * 17 15 14 41 41 H 1.09006 * 109.46872 * 59.99322 * 17 15 14 42 42 H 1.08997 * 109.47574 * 299.99612 * 18 17 15 43 43 H 1.08999 * 109.47262 * 60.00340 * 18 17 15 44 44 H 0.97008 * 119.99734 * 180.02562 * 22 21 19 45 45 H 1.08008 * 119.97547 * 179.97438 * 27 10 9 46 46 H 1.07990 * 120.03151 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9715 2.6453 -0.0001 7 6 5.3076 2.8937 0.0008 8 6 6.2101 1.8401 0.0081 9 6 7.5678 2.0952 0.0036 10 6 8.0274 3.3992 0.0025 11 6 9.5091 3.6746 0.0036 12 1 9.6895 4.6907 0.3545 13 6 10.0573 3.5204 -1.4164 14 7 10.1818 2.7241 0.8926 15 6 11.3644 3.0467 1.4529 16 8 11.8718 4.1236 1.2209 17 6 12.0562 2.0693 2.3679 18 6 13.3698 2.6771 2.8639 19 6 14.0619 1.6994 3.7783 20 1 13.6098 0.7406 3.9853 21 6 15.2717 2.0293 4.3515 22 7 15.8754 1.1762 5.1499 23 14 16.0526 3.6884 3.9951 24 1 15.5888 4.6796 4.9989 25 1 17.5307 3.5655 4.0672 26 1 15.6590 4.1390 2.6359 27 6 7.1300 4.4509 0.0011 28 6 5.7713 4.2012 0.0002 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 5.8517 0.8213 0.0134 35 1 8.2709 1.2753 0.0048 36 1 9.8769 2.5043 -1.7674 37 1 9.5568 4.2275 -2.0779 38 1 11.1290 3.7201 -1.4159 39 1 9.7762 1.8628 1.0780 40 1 11.4121 1.8506 3.2197 41 1 12.2650 1.1479 1.8241 42 1 14.0137 2.8954 2.0120 43 1 13.1614 3.5985 3.4075 44 1 16.7265 1.4085 5.5535 45 1 7.4914 5.4687 0.0007 46 1 5.0707 5.0230 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293434059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:19 Heat of formation + Delta-G solvation = -162.170643 kcal Electronic energy + Delta-G solvation = -27260.345138 eV Core-core repulsion = 23114.566406 eV Total energy + Delta-G solvation = -4145.778732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.85220 -41.25718 -40.60599 -38.94546 -37.58437 -36.21267 -35.48124 -33.44935 -32.26859 -32.14680 -30.88749 -29.46125 -27.97586 -27.86106 -24.77776 -24.16835 -23.23049 -22.16948 -21.55384 -21.09010 -19.60873 -19.21429 -18.51701 -18.10458 -18.03821 -17.67183 -17.33555 -16.56469 -16.46936 -16.37582 -16.11974 -15.90248 -15.25280 -14.94155 -14.75687 -14.68310 -14.46305 -14.43000 -14.37640 -14.13523 -13.79286 -13.42311 -13.37578 -13.33917 -13.00122 -12.89235 -12.79879 -12.14687 -12.03958 -11.99197 -11.94808 -11.90538 -11.88107 -11.74225 -11.57852 -11.37583 -10.76539 -10.73321 -10.10836 -9.97887 -9.17266 -8.30008 -6.32540 0.31810 0.36509 0.95990 1.06161 1.34244 1.36312 1.51233 1.73694 2.26810 2.36293 2.49705 2.75896 3.05956 3.52766 3.62575 3.81770 3.91654 4.00450 4.03441 4.04521 4.26541 4.27377 4.30096 4.31024 4.41249 4.44407 4.48839 4.54183 4.64277 4.69877 4.77289 4.93386 5.03471 5.07235 5.18252 5.19565 5.26188 5.32563 5.35946 5.46436 5.48105 5.63205 5.68400 5.71399 6.25281 6.26495 6.55451 6.62439 6.74025 7.32883 7.35492 8.85524 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.001754 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.087698 B =15955.154137 C =16839.017601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.465 3.535 4 O -0.529 6.529 5 C 0.063 3.937 6 O -0.320 6.320 7 C 0.118 3.882 8 C -0.197 4.197 9 C -0.072 4.072 10 C -0.128 4.128 11 C 0.186 3.814 12 H 0.074 0.926 13 C -0.152 4.152 14 N -0.714 5.714 15 C 0.517 3.483 16 O -0.584 6.584 17 C -0.117 4.117 18 C 0.005 3.995 19 C -0.529 4.529 20 H 0.051 0.949 21 C 0.014 3.986 22 N -0.943 5.943 23 Si 0.937 3.063 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.261 1.261 27 C -0.072 4.072 28 C -0.155 4.155 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.413 0.587 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.010 0.990 43 H 0.007 0.993 44 H 0.267 0.733 45 H 0.140 0.860 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.854 -3.469 -15.813 35.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.308 3.692 4 O -0.418 6.418 5 C -0.012 4.012 6 O -0.234 6.234 7 C 0.074 3.926 8 C -0.215 4.215 9 C -0.091 4.091 10 C -0.129 4.129 11 C 0.081 3.919 12 H 0.092 0.908 13 C -0.211 4.211 14 N -0.368 5.368 15 C 0.305 3.695 16 O -0.464 6.464 17 C -0.157 4.157 18 C -0.033 4.033 19 C -0.567 4.567 20 H 0.069 0.931 21 C -0.184 4.184 22 N -0.584 5.584 23 Si 0.762 3.238 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.185 1.185 27 C -0.091 4.091 28 C -0.173 4.173 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.181 0.819 35 H 0.165 0.835 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.251 0.749 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.076 0.924 45 H 0.158 0.842 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -31.756 -2.317 -15.880 35.581 hybrid contribution 0.316 0.368 0.334 0.589 sum -31.440 -1.950 -15.546 35.128 Atomic orbital electron populations 1.23631 0.73949 1.06131 1.02683 1.86452 1.25416 1.31352 1.83720 1.23484 0.91890 0.81701 0.72143 1.90723 1.67794 1.37664 1.45633 1.22209 0.87516 0.83081 1.08393 1.86035 1.21368 1.26703 1.89335 1.19092 0.81267 0.94739 0.97523 1.21497 0.93204 0.99454 1.07378 1.20979 0.95484 0.96189 0.96400 1.19789 0.93696 0.94500 1.04888 1.19674 0.87850 0.93703 0.90625 0.90778 1.22118 1.00508 1.03426 0.95000 1.46087 1.21331 1.20873 1.48508 1.21163 0.80937 0.87575 0.79829 1.90639 1.66269 1.26150 1.63297 1.21506 0.97176 0.98236 0.98799 1.19221 0.93571 0.95296 0.95260 1.21452 1.05134 1.02769 1.27297 0.93058 1.25786 0.97700 1.00370 0.94505 1.70027 1.17779 1.37657 1.32929 0.85848 0.77664 0.80550 0.79761 1.19531 1.20397 1.18527 1.20950 0.91516 0.99687 0.96905 1.20532 0.95784 0.94842 1.06167 0.91940 0.91823 0.84445 0.84357 0.84602 0.81907 0.83493 0.90829 0.90313 0.94026 0.74874 0.88039 0.87767 0.97141 0.97433 0.92436 0.84229 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.39 16 2 O -0.35 -3.82 10.57 -51.41 -0.54 -4.36 16 3 C 0.46 6.75 8.03 71.24 0.57 7.33 16 4 O -0.53 -12.25 16.25 28.39 0.46 -11.79 16 5 C 0.06 0.57 5.33 71.24 0.38 0.95 16 6 O -0.32 -5.40 9.67 -73.41 -0.71 -6.11 16 7 C 0.12 1.86 6.69 22.51 0.15 2.01 16 8 C -0.20 -2.23 9.04 22.37 0.20 -2.03 16 9 C -0.07 -0.94 9.05 22.25 0.20 -0.74 16 10 C -0.13 -2.18 4.96 -19.85 -0.10 -2.27 16 11 C 0.19 4.00 2.77 44.25 0.12 4.12 16 12 H 0.07 1.93 7.44 -2.39 -0.02 1.91 16 13 C -0.15 -3.02 9.46 71.98 0.68 -2.34 16 14 N -0.71 -16.85 5.03 -446.09 -2.24 -19.09 16 15 C 0.52 17.66 7.79 87.66 0.68 18.34 16 16 O -0.58 -25.10 15.65 -3.03 -0.05 -25.15 16 17 C -0.12 -4.31 5.64 29.85 0.17 -4.14 16 18 C 0.00 0.22 3.33 29.85 0.10 0.32 16 19 C -0.53 -30.31 9.66 25.60 0.25 -30.06 16 20 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 21 C 0.01 0.83 5.47 84.65 0.46 1.29 16 22 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 23 Si 0.94 46.76 27.47 68.60 1.88 48.65 16 24 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.26 -12.94 6.54 99.48 0.65 -12.29 16 27 C -0.07 -1.22 9.66 22.25 0.21 -1.00 16 28 C -0.15 -2.63 9.99 22.37 0.22 -2.41 16 29 H 0.06 0.49 8.13 -2.39 -0.02 0.47 16 30 H 0.06 0.47 8.13 -2.39 -0.02 0.45 16 31 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.14 0.40 7.68 -2.38 -0.02 0.38 16 33 H 0.14 0.49 7.65 -2.39 -0.02 0.47 16 34 H 0.16 0.71 6.30 -2.91 -0.02 0.69 16 35 H 0.15 1.31 6.91 -2.91 -0.02 1.29 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.41 7.01 6.86 -92.71 -0.64 6.38 16 40 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 41 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 42 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 43 H 0.01 0.37 7.52 -2.39 -0.02 0.36 16 44 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 45 H 0.14 2.06 8.03 -2.91 -0.02 2.04 16 46 H 0.13 2.16 8.06 -2.92 -0.02 2.13 16 Total: -1.00 -82.61 391.79 4.91 -77.70 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.30 Total: 7.96 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.51 Total: -9.24 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -1.94 Total: -77.66 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.84 Total: -47.41 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.88 Total: 48.65 kcal Total: -82.61 4.91 -77.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293434059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.474 kcal (2) G-P(sol) polarization free energy of solvation -82.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds