Wall clock time and date at job start Tue Mar 31 2020 19:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47254 * 2 1 4 4 O 1.42898 * 109.47426 * 179.97438 * 3 2 1 5 5 C 1.42900 * 114.00261 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47209 * 179.97438 * 5 4 3 7 7 O 1.21298 * 120.00216 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00003 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99850 * 4.74549 * 8 6 5 10 10 C 1.50697 * 109.47350 * 269.99785 * 9 8 6 11 11 H 1.08002 * 119.99897 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00200 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99857 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00005 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47385 * 89.99892 * 14 12 10 16 16 H 1.48496 * 109.47393 * 209.99974 * 14 12 10 17 17 H 1.48505 * 109.47072 * 329.99988 * 14 12 10 18 18 C 1.40097 * 119.99949 * 184.74129 * 8 6 5 19 19 C 1.38843 * 120.01846 * 247.89944 * 18 8 6 20 20 C 1.38131 * 120.03832 * 180.28582 * 19 18 8 21 21 C 1.38715 * 120.15934 * 359.50513 * 20 19 18 22 22 C 1.38995 * 119.93271 * 0.40598 * 21 20 19 23 23 C 1.38646 * 119.88483 * 359.87351 * 22 21 20 24 24 O 1.36113 * 120.78453 * 180.02562 * 22 21 20 25 25 C 1.43176 * 116.73109 * 342.80135 * 24 22 21 26 26 C 1.53472 * 108.24488 * 46.18874 * 25 24 22 27 27 O 1.36205 * 119.31785 * 180.02562 * 21 20 19 28 28 H 1.09006 * 109.47068 * 60.00280 * 1 2 3 29 29 H 1.08997 * 109.47266 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47267 * 300.00302 * 1 2 3 31 31 H 1.09003 * 109.47538 * 240.00187 * 2 1 3 32 32 H 1.08998 * 109.47172 * 120.00015 * 2 1 3 33 33 H 1.09003 * 109.46696 * 59.99671 * 3 2 1 34 34 H 1.08998 * 109.47043 * 300.00093 * 3 2 1 35 35 H 1.09004 * 109.46671 * 59.99758 * 5 4 3 36 36 H 1.08997 * 109.47093 * 300.00181 * 5 4 3 37 37 H 1.09006 * 109.46857 * 29.99839 * 9 8 6 38 38 H 1.08998 * 109.47245 * 149.99398 * 9 8 6 39 39 H 0.97001 * 119.99654 * 180.02562 * 13 12 10 40 40 H 1.07995 * 119.98413 * 0.02562 * 19 18 8 41 41 H 1.07998 * 119.92042 * 179.73902 * 20 19 18 42 42 H 1.07998 * 119.98938 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.70842 * 165.87615 * 25 24 22 44 44 H 1.08999 * 109.70321 * 286.50304 * 25 24 22 45 45 H 1.08995 * 109.70978 * 59.91994 * 26 25 24 46 46 H 1.08995 * 109.70972 * 180.55500 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0503 2.7480 0.0001 6 6 5.5525 2.6290 0.0014 7 8 6.0742 1.5340 0.0022 8 7 6.3165 3.7394 0.0007 9 6 5.6899 5.0596 0.1035 10 6 5.3794 5.5773 -1.2773 11 1 5.6247 4.9825 -2.1448 12 6 4.7832 6.8106 -1.4332 13 7 4.4850 7.5351 -0.3769 14 14 4.3989 7.4525 -3.1449 15 1 3.0349 7.0197 -3.5413 16 1 4.4668 8.9359 -3.1440 17 1 5.3898 6.9123 -4.1101 18 6 7.7097 3.6310 -0.0984 19 6 8.5118 3.9769 0.9808 20 6 9.8858 3.8758 0.8816 21 6 10.4681 3.4191 -0.2916 22 6 9.6677 3.0703 -1.3731 23 6 8.2889 3.1775 -1.2750 24 8 10.2206 2.6198 -2.5324 25 6 11.6160 2.8775 -2.7231 26 6 12.3531 2.5156 -1.4266 27 8 11.8247 3.3257 -0.3706 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7282 3.2894 0.8896 36 1 3.7290 3.2884 -0.8903 37 1 4.7669 4.9799 0.6778 38 1 6.3713 5.7471 0.6046 39 1 4.0652 8.4026 -0.4867 40 1 8.0614 4.3292 1.8970 41 1 10.5081 4.1494 1.7209 42 1 7.6653 2.9074 -2.1144 43 1 11.9938 2.2670 -3.5433 44 1 11.7672 3.9329 -2.9496 45 1 12.1961 1.4618 -1.1963 46 1 13.4189 2.7124 -1.5424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352040189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:34 Heat of formation + Delta-G solvation = -126.528242 kcal Electronic energy + Delta-G solvation = -29185.653960 eV Core-core repulsion = 25041.420798 eV Total energy + Delta-G solvation = -4144.233161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05200 -39.63038 -37.80803 -37.06378 -36.80824 -34.85020 -33.55127 -32.66153 -30.87159 -30.24603 -28.60336 -27.62890 -26.85770 -25.41261 -24.41510 -23.07605 -22.54251 -21.47463 -20.96173 -19.19630 -18.26449 -17.26331 -17.16379 -16.63284 -16.43905 -16.10320 -15.89236 -15.47096 -15.19891 -14.83257 -14.68766 -14.55681 -14.25736 -14.08152 -13.97524 -13.56467 -13.26914 -13.13441 -12.77491 -12.47807 -12.31255 -11.99881 -11.90718 -11.82688 -11.69669 -11.57873 -11.12815 -11.03066 -10.91926 -10.83402 -10.78706 -10.70344 -10.36299 -10.25568 -9.88921 -9.33701 -9.14737 -8.63290 -8.45510 -8.12782 -7.49280 -6.26129 -4.33895 1.57333 1.64898 3.08806 3.16981 3.18684 3.26509 3.29569 3.31742 3.45562 4.03816 4.23898 4.27245 4.34676 4.79014 4.84130 4.86992 5.00840 5.07017 5.08321 5.19510 5.29514 5.41811 5.44226 5.51881 5.52980 5.55014 5.59841 5.69824 5.71593 5.78228 5.92385 5.95231 6.12341 6.13637 6.17324 6.23878 6.41266 6.58136 6.80571 6.86522 7.03507 7.08488 7.33636 7.53704 7.65384 7.71206 7.93455 8.09640 8.69540 8.88990 9.34249 10.80652 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008262 B = 0.003917 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.021013 B = 7147.416862 C = 9307.170186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.060 3.940 4 O -0.372 6.372 5 C 0.052 3.948 6 C 0.524 3.476 7 O -0.537 6.537 8 N -0.559 5.559 9 C 0.237 3.763 10 C -0.541 4.541 11 H 0.063 0.937 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.184 3.816 19 C -0.116 4.116 20 C -0.104 4.104 21 C 0.034 3.966 22 C 0.059 3.941 23 C -0.099 4.099 24 O -0.307 6.307 25 C 0.021 3.979 26 C 0.022 3.978 27 O -0.310 6.310 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.267 0.733 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 -8.296 0.269 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.017 4.017 4 O -0.291 6.291 5 C -0.027 4.027 6 C 0.313 3.687 7 O -0.414 6.414 8 N -0.289 5.289 9 C 0.119 3.881 10 C -0.580 4.580 11 H 0.081 0.919 12 C -0.136 4.136 13 N -0.527 5.527 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C 0.093 3.907 19 C -0.136 4.136 20 C -0.123 4.123 21 C -0.011 4.011 22 C 0.013 3.987 23 C -0.119 4.119 24 O -0.222 6.222 25 C -0.055 4.055 26 C -0.054 4.054 27 O -0.225 6.225 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.135 0.865 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.567 -8.869 0.303 10.476 hybrid contribution -0.269 0.960 -1.147 1.520 sum 5.298 -7.909 -0.844 9.557 Atomic orbital electron populations 1.21693 0.94993 1.01895 1.02033 1.21436 0.95328 0.95883 1.03345 1.22555 0.81202 0.97554 1.00359 1.87910 1.18988 1.26576 1.95578 1.22217 0.91257 0.85357 1.03833 1.20197 0.88767 0.83679 0.76093 1.90668 1.74851 1.26554 1.49344 1.45856 1.02782 1.08999 1.71267 1.19635 0.93770 0.76641 0.98084 1.21455 1.40922 1.03211 0.92407 0.91857 1.24910 0.95115 0.96277 0.97253 1.69912 1.41441 1.12440 1.28946 0.86509 0.78897 0.78122 0.84114 1.20388 1.20968 1.19678 1.17093 0.83757 0.97918 0.91960 1.20990 0.92181 1.02043 0.98409 1.20150 0.94035 1.02721 0.95370 1.18776 0.82234 1.05541 0.94499 1.18573 0.92419 1.02521 0.85145 1.20457 0.91128 1.01856 0.98445 1.86314 1.24136 1.75615 1.36120 1.23579 0.80535 1.02865 0.98516 1.23560 0.99355 0.95595 0.86911 1.86295 1.17851 1.67238 1.51123 0.92529 0.92278 0.92562 0.91164 0.91211 0.93360 0.93176 0.90289 0.88681 0.93920 0.93838 0.92379 0.84804 0.84745 0.84919 0.86467 0.90617 0.90740 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.47 6.30 -26.73 -0.17 -1.64 16 3 C 0.06 0.86 5.94 37.16 0.22 1.08 16 4 O -0.37 -6.92 9.88 -55.14 -0.54 -7.47 16 5 C 0.05 1.00 5.08 36.00 0.18 1.18 16 6 C 0.52 11.43 7.60 -10.99 -0.08 11.35 16 7 O -0.54 -13.07 16.26 -14.37 -0.23 -13.30 16 8 N -0.56 -12.08 2.51 -114.73 -0.29 -12.37 16 9 C 0.24 5.47 4.88 -5.20 -0.03 5.45 16 10 C -0.54 -13.72 9.16 -34.44 -0.32 -14.03 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -23.72 13.29 55.43 0.74 -22.99 16 14 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.18 3.82 4.75 -83.66 -0.40 3.42 16 19 C -0.12 -2.10 9.68 -39.40 -0.38 -2.48 16 20 C -0.10 -1.69 9.95 -39.44 -0.39 -2.08 16 21 C 0.03 0.58 6.49 -39.12 -0.25 0.32 16 22 C 0.06 1.08 6.49 -39.15 -0.25 0.82 16 23 C -0.10 -2.02 9.46 -39.24 -0.37 -2.39 16 24 O -0.31 -5.05 10.42 -32.88 -0.34 -5.40 16 25 C 0.02 0.23 7.26 37.40 0.27 0.51 16 26 C 0.02 0.23 7.26 37.40 0.27 0.50 16 27 O -0.31 -4.54 10.42 -33.18 -0.35 -4.89 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.38 7.26 -51.93 -0.38 1.01 16 36 H 0.10 1.83 7.91 -51.93 -0.41 1.42 16 37 H 0.04 0.98 6.47 -51.93 -0.34 0.64 16 38 H 0.04 1.05 7.86 -51.93 -0.41 0.65 16 39 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.13 2.81 8.06 -52.49 -0.42 2.39 16 43 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -31.58 388.68 -8.60 -40.19 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.00 Total: 2.57 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.43 Total: 2.61 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.45 Total: -35.36 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -1.47 Total: -31.05 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.58 -8.60 -40.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352040189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.341 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds