Wall clock time and date at job start Tue Mar 31 2020 19:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47254 * 2 1 4 4 O 1.42898 * 109.47426 * 179.97438 * 3 2 1 5 5 C 1.42900 * 114.00261 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47209 * 179.97438 * 5 4 3 7 7 O 1.21298 * 120.00216 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00003 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99850 * 4.74549 * 8 6 5 10 10 C 1.50697 * 109.47350 * 269.99785 * 9 8 6 11 11 H 1.08002 * 119.99897 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00200 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99857 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00005 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47385 * 89.99892 * 14 12 10 16 16 H 1.48496 * 109.47393 * 209.99974 * 14 12 10 17 17 H 1.48505 * 109.47072 * 329.99988 * 14 12 10 18 18 C 1.40097 * 119.99949 * 184.74129 * 8 6 5 19 19 C 1.38843 * 120.01846 * 247.89944 * 18 8 6 20 20 C 1.38131 * 120.03832 * 180.28582 * 19 18 8 21 21 C 1.38715 * 120.15934 * 359.50513 * 20 19 18 22 22 C 1.38995 * 119.93271 * 0.40598 * 21 20 19 23 23 C 1.38646 * 119.88483 * 359.87351 * 22 21 20 24 24 O 1.36113 * 120.78453 * 180.02562 * 22 21 20 25 25 C 1.43176 * 116.73109 * 342.80135 * 24 22 21 26 26 C 1.53472 * 108.24488 * 46.18874 * 25 24 22 27 27 O 1.36205 * 119.31785 * 180.02562 * 21 20 19 28 28 H 1.09006 * 109.47068 * 60.00280 * 1 2 3 29 29 H 1.08997 * 109.47266 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47267 * 300.00302 * 1 2 3 31 31 H 1.09003 * 109.47538 * 240.00187 * 2 1 3 32 32 H 1.08998 * 109.47172 * 120.00015 * 2 1 3 33 33 H 1.09003 * 109.46696 * 59.99671 * 3 2 1 34 34 H 1.08998 * 109.47043 * 300.00093 * 3 2 1 35 35 H 1.09004 * 109.46671 * 59.99758 * 5 4 3 36 36 H 1.08997 * 109.47093 * 300.00181 * 5 4 3 37 37 H 1.09006 * 109.46857 * 29.99839 * 9 8 6 38 38 H 1.08998 * 109.47245 * 149.99398 * 9 8 6 39 39 H 0.97001 * 119.99654 * 180.02562 * 13 12 10 40 40 H 1.07995 * 119.98413 * 0.02562 * 19 18 8 41 41 H 1.07998 * 119.92042 * 179.73902 * 20 19 18 42 42 H 1.07998 * 119.98938 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.70842 * 165.87615 * 25 24 22 44 44 H 1.08999 * 109.70321 * 286.50304 * 25 24 22 45 45 H 1.08995 * 109.70978 * 59.91994 * 26 25 24 46 46 H 1.08995 * 109.70972 * 180.55500 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0503 2.7480 0.0001 6 6 5.5525 2.6290 0.0014 7 8 6.0742 1.5340 0.0022 8 7 6.3165 3.7394 0.0007 9 6 5.6899 5.0596 0.1035 10 6 5.3794 5.5773 -1.2773 11 1 5.6247 4.9825 -2.1448 12 6 4.7832 6.8106 -1.4332 13 7 4.4850 7.5351 -0.3769 14 14 4.3989 7.4525 -3.1449 15 1 3.0349 7.0197 -3.5413 16 1 4.4668 8.9359 -3.1440 17 1 5.3898 6.9123 -4.1101 18 6 7.7097 3.6310 -0.0984 19 6 8.5118 3.9769 0.9808 20 6 9.8858 3.8758 0.8816 21 6 10.4681 3.4191 -0.2916 22 6 9.6677 3.0703 -1.3731 23 6 8.2889 3.1775 -1.2750 24 8 10.2206 2.6198 -2.5324 25 6 11.6160 2.8775 -2.7231 26 6 12.3531 2.5156 -1.4266 27 8 11.8247 3.3257 -0.3706 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7282 3.2894 0.8896 36 1 3.7290 3.2884 -0.8903 37 1 4.7669 4.9799 0.6778 38 1 6.3713 5.7471 0.6046 39 1 4.0652 8.4026 -0.4867 40 1 8.0614 4.3292 1.8970 41 1 10.5081 4.1494 1.7209 42 1 7.6653 2.9074 -2.1144 43 1 11.9938 2.2670 -3.5433 44 1 11.7672 3.9329 -2.9496 45 1 12.1961 1.4618 -1.1963 46 1 13.4189 2.7124 -1.5424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352040189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:33 Heat of formation + Delta-G solvation = -144.323323 kcal Electronic energy + Delta-G solvation = -29186.425612 eV Core-core repulsion = 25041.420798 eV Total energy + Delta-G solvation = -4145.004814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.30334 -41.22419 -39.17449 -38.28441 -38.21234 -36.56772 -34.60530 -34.53837 -32.02868 -31.66761 -29.90091 -29.35961 -28.31893 -26.53633 -25.66357 -24.84223 -23.99997 -22.51429 -22.20426 -20.61372 -19.54758 -18.89298 -18.59204 -18.11893 -17.93736 -17.56177 -17.36051 -16.85369 -16.42499 -16.38879 -16.08711 -15.88165 -15.49015 -15.38212 -15.17324 -14.91573 -14.54958 -14.43849 -14.31664 -14.04479 -13.61860 -13.51029 -13.15537 -13.08365 -12.95902 -12.91419 -12.84771 -12.66497 -12.27939 -12.02383 -12.00145 -11.83519 -11.79292 -11.77835 -11.50614 -10.89684 -10.70440 -10.57907 -10.04857 -9.60500 -8.94796 -8.23574 -6.37702 0.14779 0.24055 1.39232 1.41660 1.47513 1.53949 1.76467 2.01703 2.28942 2.38018 2.62649 2.91603 3.07255 3.27701 3.64458 3.69983 3.96277 4.03086 4.03769 4.12638 4.13803 4.18609 4.20986 4.33883 4.38312 4.43290 4.45513 4.56874 4.58480 4.64151 4.64657 4.79174 4.88670 4.95845 5.03870 5.11724 5.14535 5.23874 5.33786 5.36278 5.41516 5.65395 5.81273 5.88901 5.99013 6.13258 6.35447 6.38540 6.71691 7.15974 7.34262 8.82025 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008262 B = 0.003917 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.021013 B = 7147.416862 C = 9307.170186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.050 3.950 4 O -0.395 6.395 5 C 0.062 3.938 6 C 0.518 3.482 7 O -0.569 6.569 8 N -0.556 5.556 9 C 0.251 3.749 10 C -0.550 4.550 11 H 0.049 0.951 12 C 0.030 3.970 13 N -0.913 5.913 14 Si 0.951 3.049 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.278 1.278 18 C 0.149 3.851 19 C -0.122 4.122 20 C -0.096 4.096 21 C 0.039 3.961 22 C 0.055 3.945 23 C -0.125 4.125 24 O -0.328 6.328 25 C 0.010 3.990 26 C 0.016 3.984 27 O -0.313 6.313 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.031 0.969 39 H 0.270 0.730 40 H 0.147 0.853 41 H 0.169 0.831 42 H 0.109 0.891 43 H 0.156 0.844 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 -8.232 0.166 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C -0.026 4.026 4 O -0.314 6.314 5 C -0.017 4.017 6 C 0.308 3.692 7 O -0.448 6.448 8 N -0.285 5.285 9 C 0.132 3.868 10 C -0.588 4.588 11 H 0.067 0.933 12 C -0.171 4.171 13 N -0.552 5.552 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.203 1.203 18 C 0.058 3.942 19 C -0.142 4.142 20 C -0.115 4.115 21 C -0.006 4.006 22 C 0.009 3.991 23 C -0.145 4.145 24 O -0.243 6.243 25 C -0.064 4.064 26 C -0.059 4.059 27 O -0.228 6.228 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.165 0.835 41 H 0.186 0.814 42 H 0.127 0.873 43 H 0.173 0.827 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.594 -8.804 0.193 11.001 hybrid contribution -0.414 0.879 -1.174 1.524 sum 6.180 -7.925 -0.981 10.098 Atomic orbital electron populations 1.21669 0.92630 1.03088 1.02629 1.21469 0.97244 0.94242 1.02836 1.22888 0.78971 0.99391 1.01316 1.87895 1.21566 1.26191 1.95731 1.22093 0.89468 0.85962 1.04203 1.20714 0.89942 0.83236 0.75357 1.90629 1.75661 1.27510 1.51025 1.45785 1.03542 1.08331 1.70796 1.19351 0.93451 0.77054 0.96910 1.21572 1.40985 1.03412 0.92880 0.93307 1.25522 0.94934 0.96367 1.00275 1.69978 1.41982 1.12803 1.30423 0.85658 0.78818 0.77649 0.80228 1.19364 1.20383 1.20337 1.17429 0.83504 1.00013 0.93214 1.21174 0.92970 1.01892 0.98127 1.20511 0.93570 1.01191 0.96207 1.18885 0.83415 1.04291 0.93981 1.18582 0.91886 1.02234 0.86405 1.20389 0.92340 1.03794 0.98023 1.86281 1.27207 1.75452 1.35381 1.24048 0.77919 1.04123 1.00304 1.23981 1.01349 0.95358 0.85167 1.86293 1.16021 1.67858 1.52665 0.92115 0.90817 0.91776 0.91936 0.91522 0.91933 0.92591 0.88745 0.89157 0.93749 0.95096 0.92078 0.83516 0.81377 0.87290 0.82686 0.90239 0.90275 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.83 6.30 30.60 0.19 -2.64 16 3 C 0.05 1.42 5.94 71.98 0.43 1.85 16 4 O -0.39 -14.99 9.88 -129.94 -1.28 -16.27 16 5 C 0.06 2.42 5.08 71.23 0.36 2.79 16 6 C 0.52 23.55 7.60 87.65 0.67 24.22 16 7 O -0.57 -28.94 16.26 15.95 0.26 -28.68 16 8 N -0.56 -25.03 2.51 -635.26 -1.59 -26.62 16 9 C 0.25 11.95 4.88 85.63 0.42 12.37 16 10 C -0.55 -28.54 9.16 25.60 0.23 -28.31 16 11 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 12 C 0.03 1.56 5.46 84.65 0.46 2.03 16 13 N -0.91 -48.73 13.29 21.45 0.28 -48.45 16 14 Si 0.95 41.47 29.54 68.60 2.03 43.50 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 C 0.15 6.44 4.75 38.09 0.18 6.62 16 19 C -0.12 -4.44 9.68 22.39 0.22 -4.22 16 20 C -0.10 -3.02 9.95 22.36 0.22 -2.79 16 21 C 0.04 1.30 6.49 22.57 0.15 1.44 16 22 C 0.05 2.03 6.49 22.55 0.15 2.18 16 23 C -0.13 -5.40 9.46 22.49 0.21 -5.19 16 24 O -0.33 -10.73 10.42 -82.61 -0.86 -11.59 16 25 C 0.01 0.21 7.26 72.14 0.52 0.73 16 26 C 0.02 0.29 7.26 72.14 0.52 0.81 16 27 O -0.31 -8.37 10.42 -83.67 -0.87 -9.24 16 28 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.09 3.35 7.26 -2.39 -0.02 3.33 16 36 H 0.09 3.59 7.91 -2.39 -0.02 3.57 16 37 H 0.04 2.08 6.47 -2.38 -0.02 2.07 16 38 H 0.03 1.54 7.86 -2.39 -0.02 1.52 16 39 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 40 H 0.15 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 43 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -69.94 388.68 4.58 -65.35 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.97 Total: 21.85 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.65 Total: 10.15 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -1.31 Total: -75.07 kcal Atomic # 8 Polarization: -63.03 SS G_CDS: -2.76 Total: -65.78 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -69.94 4.58 -65.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352040189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.971 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds