Wall clock time and date at job start Tue Mar 31 2020 19:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47194 * 2 1 4 4 O 1.42900 * 109.47270 * 120.00529 * 2 1 3 5 5 C 1.42896 * 114.00049 * 89.99653 * 4 2 1 6 6 C 1.50702 * 109.47144 * 179.97438 * 5 4 2 7 7 O 1.21299 * 119.99614 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00114 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00174 * 4.73739 * 8 6 5 10 10 C 1.50692 * 109.47078 * 269.99951 * 9 8 6 11 11 H 1.08002 * 120.00616 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00137 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99881 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00502 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46972 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47149 * 119.99978 * 14 12 10 17 17 H 1.48502 * 109.47415 * 240.00710 * 14 12 10 18 18 C 1.40104 * 119.99878 * 184.73631 * 8 6 5 19 19 C 1.38850 * 120.01739 * 247.87655 * 18 8 6 20 20 C 1.38123 * 120.03496 * 179.75186 * 19 18 8 21 21 C 1.38715 * 120.16477 * 0.24792 * 20 19 18 22 22 C 1.38990 * 119.93006 * 359.94084 * 21 20 19 23 23 C 1.38645 * 119.88814 * 0.11781 * 22 21 20 24 24 O 1.36115 * 120.78048 * 180.20114 * 22 21 20 25 25 C 1.43176 * 116.71621 * 342.72286 * 24 22 21 26 26 C 1.53474 * 108.22695 * 46.27224 * 25 24 22 27 27 O 1.36198 * 119.31747 * 179.80814 * 21 20 19 28 28 H 1.09004 * 109.46775 * 299.99806 * 1 2 3 29 29 H 1.08997 * 109.47169 * 59.99810 * 1 2 3 30 30 H 1.08995 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46775 * 240.00194 * 2 1 3 32 32 H 1.08998 * 109.47131 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47217 * 300.00161 * 3 2 1 34 34 H 1.09004 * 109.47101 * 60.00393 * 3 2 1 35 35 H 1.09002 * 109.47155 * 60.00213 * 5 4 2 36 36 H 1.08997 * 109.47377 * 299.99939 * 5 4 2 37 37 H 1.09002 * 109.46983 * 29.99973 * 9 8 6 38 38 H 1.08996 * 109.46915 * 149.99428 * 9 8 6 39 39 H 0.96995 * 120.00174 * 179.97438 * 13 12 10 40 40 H 1.07998 * 119.98235 * 0.02989 * 19 18 8 41 41 H 1.08002 * 119.91880 * 180.26619 * 20 19 18 42 42 H 1.07999 * 119.99693 * 179.88702 * 23 22 21 43 43 H 1.08995 * 109.71112 * 286.58780 * 25 24 22 44 44 H 1.09006 * 109.71002 * 165.95040 * 25 24 22 45 45 H 1.09000 * 109.70838 * 180.54599 * 26 25 24 46 46 H 1.09001 * 109.74435 * 59.94034 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9884 6 6 2.7015 -2.6834 2.2743 7 8 2.8754 -1.9809 3.2478 8 7 2.9557 -4.0051 2.3429 9 6 2.8446 -4.8358 1.1414 10 6 1.4395 -5.3681 1.0269 11 1 0.7029 -5.1136 1.7746 12 6 1.0941 -6.1802 -0.0325 13 7 1.9911 -6.4907 -0.9428 14 14 -0.6475 -6.8407 -0.1741 15 1 -1.4579 -6.3488 0.9690 16 1 -1.2524 -6.3726 -1.4469 17 1 -0.6168 -8.3253 -0.1571 18 6 3.3263 -4.5847 3.5634 19 6 4.6111 -5.0827 3.7342 20 6 4.9784 -5.6496 4.9390 21 6 4.0647 -5.7280 5.9798 22 6 2.7766 -5.2340 5.8105 23 6 2.4080 -4.6661 4.6005 24 8 1.8674 -5.2983 6.8213 25 6 2.1547 -6.2087 7.8884 26 6 3.6216 -6.0202 8.2985 27 8 4.4441 -6.2940 7.1591 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 2.9320 -2.2467 0.1984 36 1 1.2538 -2.5434 0.7123 37 1 3.0786 -4.2358 0.2620 38 1 3.5443 -5.6687 1.2095 39 1 1.7483 -7.0623 -1.6878 40 1 5.3251 -5.0227 2.9261 41 1 5.9796 -6.0324 5.0713 42 1 1.4071 -4.2833 4.4665 43 1 1.9960 -7.2328 7.5507 44 1 1.5053 -5.9962 8.7378 45 1 3.8693 -6.7103 9.1050 46 1 3.7824 -4.9944 8.6300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352040681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:36 Heat of formation + Delta-G solvation = -141.775608 kcal Electronic energy + Delta-G solvation = -29530.385025 eV Core-core repulsion = 25385.490688 eV Total energy + Delta-G solvation = -4144.894337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.30409 -41.22961 -39.33414 -38.35321 -38.23436 -36.56496 -34.57266 -33.70792 -32.01597 -31.62021 -29.77630 -29.23280 -28.24048 -27.85672 -25.69191 -24.86810 -24.02034 -22.35302 -22.16704 -20.65256 -19.55006 -18.88279 -18.54999 -18.12212 -17.88498 -17.75150 -17.02078 -16.82875 -16.42334 -16.37465 -15.93429 -15.66051 -15.46390 -15.38565 -14.98016 -14.84212 -14.60320 -14.37119 -14.12862 -13.83295 -13.61750 -13.49952 -13.45250 -13.07260 -13.04262 -12.94573 -12.83673 -12.69320 -12.35132 -12.28861 -12.01680 -11.99351 -11.78999 -11.62681 -11.50610 -10.88727 -10.65586 -10.57584 -10.04398 -9.60489 -8.94743 -8.23858 -6.37811 0.14827 0.24102 1.37684 1.41242 1.48095 1.54536 1.78036 2.01923 2.29171 2.37781 2.62664 2.94476 3.06914 3.27720 3.64445 3.70047 3.96242 4.02813 4.03753 4.12448 4.13268 4.18988 4.21185 4.30070 4.35226 4.39282 4.45567 4.58524 4.64347 4.75385 4.78975 4.83867 4.90665 4.95416 4.96343 5.03964 5.12030 5.27809 5.34208 5.35162 5.41565 5.65534 5.82089 5.89816 5.98957 6.19510 6.36514 6.38822 6.71903 7.16820 7.34225 8.81961 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.004172 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.765200 B = 6709.112917 C = 8640.746335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.066 3.934 3 C -0.142 4.142 4 O -0.387 6.387 5 C 0.062 3.938 6 C 0.518 3.482 7 O -0.569 6.569 8 N -0.556 5.556 9 C 0.251 3.749 10 C -0.548 4.548 11 H 0.048 0.952 12 C 0.031 3.969 13 N -0.913 5.913 14 Si 0.950 3.050 15 H -0.276 1.276 16 H -0.271 1.271 17 H -0.279 1.279 18 C 0.149 3.851 19 C -0.122 4.122 20 C -0.096 4.096 21 C 0.040 3.960 22 C 0.055 3.945 23 C -0.125 4.125 24 O -0.328 6.328 25 C 0.010 3.990 26 C 0.016 3.984 27 O -0.313 6.313 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.031 0.969 39 H 0.270 0.730 40 H 0.147 0.853 41 H 0.169 0.831 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.156 0.844 45 H 0.162 0.838 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 3.731 9.222 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 C -0.199 4.199 4 O -0.307 6.307 5 C -0.017 4.017 6 C 0.308 3.692 7 O -0.448 6.448 8 N -0.285 5.285 9 C 0.132 3.868 10 C -0.587 4.587 11 H 0.066 0.934 12 C -0.171 4.171 13 N -0.552 5.552 14 Si 0.776 3.224 15 H -0.201 1.201 16 H -0.196 1.196 17 H -0.204 1.204 18 C 0.058 3.942 19 C -0.141 4.141 20 C -0.115 4.115 21 C -0.006 4.006 22 C 0.009 3.991 23 C -0.146 4.146 24 O -0.243 6.243 25 C -0.064 4.064 26 C -0.059 4.059 27 O -0.228 6.228 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.165 0.835 41 H 0.186 0.814 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.173 0.827 45 H 0.180 0.820 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.454 4.095 9.755 10.860 hybrid contribution -1.296 -0.778 -0.411 1.567 sum 1.158 3.316 9.343 9.982 Atomic orbital electron populations 1.22297 0.95302 1.02148 1.03318 1.22483 0.94535 0.94681 0.87442 1.21845 1.01612 0.93067 1.03365 1.87962 1.87054 1.18215 1.37459 1.22110 1.02275 0.83000 0.94291 1.20733 0.76691 0.81538 0.90288 1.90627 1.53400 1.61222 1.39565 1.45787 1.66202 1.07202 1.09294 1.19347 0.96762 0.90044 0.80610 1.21592 0.96558 1.31343 1.09192 0.93372 1.25516 1.00836 0.95756 0.94967 1.69982 1.35230 1.36920 1.13069 0.85621 0.80328 0.78283 0.78187 1.20103 1.19608 1.20417 1.17441 0.92997 0.97828 0.85938 1.21169 0.94485 1.00074 0.98400 1.20510 0.99979 1.00655 0.90310 1.18884 0.91603 1.01362 0.88721 1.18576 0.88506 1.02761 0.89234 1.20393 0.99594 1.03232 0.91353 1.86284 1.45140 1.61722 1.31189 1.24048 0.98634 0.93575 0.90133 1.23976 0.89585 1.04896 0.87405 1.86281 1.52326 1.68978 1.15229 0.92431 0.88991 0.93569 0.90990 0.92312 0.88427 0.92469 0.88885 0.89430 0.93794 0.95103 0.92078 0.83521 0.81372 0.87339 0.90221 0.82689 0.82024 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 9.53 71.98 0.69 -3.70 16 2 C 0.07 1.82 3.34 30.60 0.10 1.93 16 3 C -0.14 -3.15 9.56 71.98 0.69 -2.47 16 4 O -0.39 -14.59 9.52 -129.94 -1.24 -15.83 16 5 C 0.06 2.45 4.89 71.24 0.35 2.80 16 6 C 0.52 23.59 7.61 87.66 0.67 24.26 16 7 O -0.57 -28.97 16.26 15.95 0.26 -28.71 16 8 N -0.56 -25.09 2.51 -635.27 -1.59 -26.68 16 9 C 0.25 11.97 4.88 85.63 0.42 12.39 16 10 C -0.55 -28.51 9.16 25.60 0.23 -28.28 16 11 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 12 C 0.03 1.58 5.46 84.65 0.46 2.04 16 13 N -0.91 -48.74 13.29 21.45 0.28 -48.46 16 14 Si 0.95 41.54 29.54 68.60 2.03 43.57 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 C 0.15 6.43 4.75 38.09 0.18 6.61 16 19 C -0.12 -4.43 9.68 22.39 0.22 -4.21 16 20 C -0.10 -3.01 9.95 22.36 0.22 -2.79 16 21 C 0.04 1.30 6.49 22.56 0.15 1.45 16 22 C 0.05 2.05 6.49 22.55 0.15 2.19 16 23 C -0.13 -5.42 9.47 22.49 0.21 -5.21 16 24 O -0.33 -10.74 10.42 -82.63 -0.86 -11.61 16 25 C 0.01 0.21 7.26 72.14 0.52 0.73 16 26 C 0.02 0.29 7.26 72.14 0.52 0.81 16 27 O -0.31 -8.36 10.42 -83.58 -0.87 -9.23 16 28 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.29 7.87 -2.39 -0.02 1.28 16 31 H 0.07 1.84 7.79 -2.38 -0.02 1.82 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.09 3.32 7.20 -2.39 -0.02 3.30 16 36 H 0.09 3.52 7.64 -2.39 -0.02 3.50 16 37 H 0.04 2.07 6.47 -2.39 -0.02 2.05 16 38 H 0.03 1.54 7.86 -2.39 -0.02 1.52 16 39 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 40 H 0.15 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.16 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -70.28 387.47 4.76 -65.51 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.98 Total: 22.88 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.78 Total: 8.56 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -1.31 Total: -75.14 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -2.71 Total: -65.38 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -70.28 4.76 -65.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352040681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.264 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds