Wall clock time and date at job start Tue Mar 31 2020 18:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00005 * 2 1 4 4 O 1.20823 * 120.00362 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00222 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47191 * 275.00467 * 5 3 2 7 7 O 1.42904 * 109.46668 * 34.99936 * 5 3 2 8 8 C 1.52996 * 109.47295 * 154.99872 * 5 3 2 9 9 N 1.46495 * 109.47168 * 179.97438 * 8 5 3 10 10 C 1.34779 * 120.00324 * 180.02562 * 9 8 5 11 11 O 1.21278 * 119.99703 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00201 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.47044 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47493 * 305.98058 * 13 12 10 15 15 C 1.50699 * 109.46802 * 65.98063 * 13 12 10 16 16 H 1.07996 * 120.00319 * 26.91275 * 15 13 12 17 17 C 1.37882 * 120.00193 * 206.90875 * 15 13 12 18 18 N 1.31519 * 119.99874 * 353.28371 * 17 15 13 19 19 Si 1.86801 * 120.00294 * 173.55447 * 17 15 13 20 20 H 1.48497 * 109.47144 * 269.72519 * 19 17 15 21 21 H 1.48498 * 109.46829 * 29.72826 * 19 17 15 22 22 H 1.48507 * 109.46835 * 149.72714 * 19 17 15 23 23 C 1.50699 * 109.47289 * 185.97873 * 13 12 10 24 24 C 1.38237 * 119.99863 * 294.44402 * 23 13 12 25 25 C 1.38237 * 119.99818 * 179.78435 * 24 23 13 26 26 C 1.38229 * 120.00057 * 0.44553 * 25 24 23 27 27 C 1.38236 * 119.99936 * 359.80698 * 26 25 24 28 28 C 1.38230 * 120.00146 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47188 * 59.99486 * 1 2 3 30 30 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46797 * 299.99943 * 1 2 3 32 32 H 1.09006 * 109.47052 * 299.99568 * 6 5 3 33 33 H 1.09005 * 109.47567 * 59.99304 * 6 5 3 34 34 H 1.09002 * 109.47398 * 179.97438 * 6 5 3 35 35 H 0.96699 * 113.99706 * 60.00269 * 7 5 3 36 36 H 1.09006 * 109.46938 * 60.00438 * 8 5 3 37 37 H 1.08995 * 109.47200 * 300.00391 * 8 5 3 38 38 H 0.97006 * 119.99754 * 0.02562 * 9 8 5 39 39 H 1.09006 * 109.46831 * 60.00366 * 12 10 9 40 40 H 1.08995 * 109.47505 * 300.00197 * 12 10 9 41 41 H 0.97005 * 119.99795 * 354.69035 * 18 17 15 42 42 H 1.07999 * 119.99895 * 359.97438 * 24 23 13 43 43 H 1.08004 * 120.00271 * 180.27444 * 25 24 23 44 44 H 1.08007 * 120.00590 * 179.83396 * 26 25 24 45 45 H 1.08003 * 120.00202 * 180.02562 * 27 26 25 46 46 H 1.08004 * 120.00248 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0828 1.1757 1.4361 7 8 4.0995 0.1978 -0.7738 8 6 4.0070 2.6073 -0.6101 9 7 5.4699 2.6842 -0.6101 10 6 6.0874 3.7762 -1.1029 11 8 5.4318 4.6954 -1.5458 12 6 7.5923 3.8556 -1.1023 13 6 8.0329 5.1879 -1.7120 14 1 7.5783 5.3054 -2.6956 15 6 7.5945 6.3189 -0.8177 16 1 7.4632 6.1505 0.2410 17 6 7.3611 7.5688 -1.3510 18 7 7.6466 7.8094 -2.6121 19 14 6.6465 8.9225 -0.2805 20 1 5.1642 8.8894 -0.3643 21 1 7.0675 8.7137 1.1282 22 1 7.1398 10.2407 -0.7544 23 6 9.5337 5.2068 -1.8466 24 6 10.3294 5.1891 -0.7163 25 6 11.7061 5.2019 -0.8400 26 6 12.2871 5.2418 -2.0936 27 6 11.4914 5.2647 -3.2238 28 6 10.1148 5.2473 -3.1003 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.6762 1.9972 2.0260 33 1 3.7689 0.2265 1.8705 34 1 5.1714 1.2323 1.4357 35 1 3.8134 0.1976 -1.6975 36 1 3.6003 3.4288 -0.0203 37 1 3.6390 2.6779 -1.6337 38 1 5.9942 1.9492 -0.2554 39 1 7.9996 3.0342 -1.6919 40 1 7.9595 3.7850 -0.0785 41 1 8.0919 7.1330 -3.1461 42 1 9.8754 5.1622 0.2632 43 1 12.3279 5.1837 0.0430 44 1 13.3628 5.2545 -2.1903 45 1 11.9453 5.2954 -4.2033 46 1 9.4931 5.2657 -3.9832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360182064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:31 Heat of formation + Delta-G solvation = -150.606838 kcal Electronic energy + Delta-G solvation = -29000.578116 eV Core-core repulsion = 24855.300829 eV Total energy + Delta-G solvation = -4145.277288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.15497 -39.33046 -38.46010 -37.69583 -36.81222 -34.49120 -33.90639 -31.71451 -31.21277 -30.10959 -29.09040 -28.20385 -26.95932 -25.00358 -23.71608 -22.72152 -21.66471 -20.70147 -20.36534 -19.55793 -18.73148 -17.38465 -17.11878 -16.85071 -16.50150 -16.00995 -15.48840 -15.33622 -15.07192 -14.62637 -14.38253 -14.13704 -14.00075 -13.64779 -13.49102 -13.13566 -12.99944 -12.86282 -12.70148 -12.61847 -12.43697 -12.32572 -12.10041 -11.97354 -11.83949 -11.45676 -11.15949 -11.10426 -10.89955 -10.68907 -10.43033 -10.35498 -10.12116 -10.03878 -9.69565 -9.10085 -8.72983 -8.60610 -8.26729 -8.13708 -7.63611 -6.21293 -3.90483 1.72511 2.14722 2.19343 2.25349 3.42247 3.51031 3.52581 3.57784 3.70204 3.75090 4.14725 4.37696 4.47733 4.61480 4.68820 4.75463 4.83529 5.15578 5.26710 5.33504 5.41631 5.50480 5.59369 5.60099 5.63607 5.74029 5.76308 5.85070 5.96192 5.99718 6.07649 6.16877 6.31940 6.42132 6.66268 6.71748 6.78946 6.92968 6.98233 7.20900 7.22967 7.36997 7.38141 7.73110 7.85905 7.95588 8.23382 8.53023 8.94817 8.99345 9.78458 11.18211 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.002970 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.761326 B = 9424.993373 C =10777.701427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.347 6.347 3 C 0.438 3.562 4 O -0.490 6.490 5 C 0.141 3.859 6 C -0.141 4.141 7 O -0.533 6.533 8 C 0.109 3.891 9 N -0.742 5.742 10 C 0.514 3.486 11 O -0.496 6.496 12 C -0.114 4.114 13 C 0.073 3.927 14 H 0.049 0.951 15 C -0.568 4.568 16 H 0.046 0.954 17 C 0.032 3.968 18 N -0.907 5.907 19 Si 1.063 2.937 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.288 1.288 23 C -0.033 4.033 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.152 4.152 27 C -0.125 4.125 28 C -0.130 4.130 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.386 0.614 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.398 0.602 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.271 0.729 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.550 -18.197 5.291 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.263 6.263 3 C 0.278 3.722 4 O -0.376 6.376 5 C 0.098 3.902 6 C -0.198 4.198 7 O -0.339 6.339 8 C -0.016 4.016 9 N -0.400 5.400 10 C 0.300 3.700 11 O -0.366 6.366 12 C -0.155 4.155 13 C 0.053 3.947 14 H 0.068 0.932 15 C -0.606 4.606 16 H 0.064 0.936 17 C -0.173 4.173 18 N -0.542 5.542 19 Si 0.892 3.108 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.034 4.034 24 C -0.124 4.124 25 C -0.148 4.148 26 C -0.170 4.170 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.235 0.765 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.546 -15.753 5.478 17.917 hybrid contribution 0.215 -1.614 -0.291 1.654 sum -6.332 -17.367 5.187 19.200 Atomic orbital electron populations 1.23339 0.76293 1.03870 1.02761 1.86581 1.23355 1.32831 1.83522 1.24619 0.92601 0.81835 0.73096 1.90745 1.66815 1.36266 1.43737 1.21330 0.84122 0.88787 0.95917 1.21821 1.03560 1.03901 0.90551 1.86608 1.72895 1.48141 1.26273 1.21587 0.83313 0.94934 1.01766 1.46046 1.05150 1.21677 1.67128 1.20914 0.91195 0.80785 0.77062 1.90772 1.66785 1.35853 1.43231 1.21654 0.90417 1.00862 1.02528 1.17866 0.86585 0.91524 0.98688 0.93246 1.21565 1.49213 0.95305 0.94471 0.93590 1.25571 0.95108 0.99125 0.97524 1.70704 1.38156 1.37886 1.07445 0.83646 0.76691 0.75865 0.74582 1.21449 1.21695 1.21364 1.20848 0.98509 0.92207 0.91818 1.20925 0.92563 1.00097 0.98841 1.21016 0.95199 1.01936 0.96672 1.20826 0.98568 1.04622 0.93016 1.20963 0.94087 1.01537 0.97692 1.21075 0.94273 1.01985 0.97493 0.91720 0.87882 0.91757 0.89854 0.90498 0.89444 0.76508 0.89336 0.91082 0.76758 0.91483 0.90132 0.91752 0.86663 0.87447 0.87591 0.87462 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.41 10.32 -44.43 -0.46 -3.87 16 3 C 0.44 5.00 6.80 36.01 0.24 5.24 16 4 O -0.49 -7.03 15.84 -18.75 -0.30 -7.33 16 5 C 0.14 1.46 1.01 -91.77 -0.09 1.37 16 6 C -0.14 -1.26 8.65 37.16 0.32 -0.94 16 7 O -0.53 -4.86 12.52 -49.12 -0.61 -5.47 16 8 C 0.11 1.47 4.31 -4.05 -0.02 1.46 16 9 N -0.74 -10.54 5.15 -60.30 -0.31 -10.85 16 10 C 0.51 10.00 7.58 -10.99 -0.08 9.92 16 11 O -0.50 -12.33 15.02 5.56 0.08 -12.24 16 12 C -0.11 -2.17 4.95 -27.89 -0.14 -2.31 16 13 C 0.07 1.72 1.23 -92.93 -0.11 1.61 16 14 H 0.05 1.33 6.59 -51.93 -0.34 0.99 16 15 C -0.57 -15.41 6.35 -34.44 -0.22 -15.63 16 16 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 17 C 0.03 0.93 5.45 -17.82 -0.10 0.84 16 18 N -0.91 -27.78 13.56 55.43 0.75 -27.02 16 19 Si 1.06 26.51 29.91 -169.99 -5.08 21.43 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 C -0.03 -0.73 4.53 -104.62 -0.47 -1.20 16 24 C -0.11 -2.15 8.90 -39.58 -0.35 -2.50 16 25 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 26 C -0.15 -2.62 10.05 -39.59 -0.40 -3.02 16 27 C -0.12 -2.27 10.05 -39.59 -0.40 -2.67 16 28 C -0.13 -2.70 9.18 -39.59 -0.36 -3.06 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.72 6.86 -51.93 -0.36 0.36 16 35 H 0.39 2.52 9.04 45.56 0.41 2.93 16 36 H 0.09 1.39 7.87 -51.93 -0.41 0.98 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 4.51 7.19 -40.82 -0.29 4.21 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.41 7.97 -51.93 -0.41 1.00 16 41 H 0.27 8.16 6.24 -40.82 -0.25 7.91 16 42 H 0.12 2.28 7.85 -52.49 -0.41 1.86 16 43 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 45 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 46 H 0.11 2.26 7.95 -52.48 -0.42 1.84 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -35.96 389.81 -7.49 -43.45 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.92 Total: 8.37 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.51 Total: -12.33 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.44 Total: -37.87 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.29 Total: -28.92 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.08 Total: 21.43 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.96 -7.49 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360182064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.157 kcal (2) G-P(sol) polarization free energy of solvation -35.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds