Wall clock time and date at job start Tue Mar 31 2020 18:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00005 * 2 1 4 4 O 1.20823 * 120.00362 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00222 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47191 * 275.00467 * 5 3 2 7 7 O 1.42904 * 109.46668 * 34.99936 * 5 3 2 8 8 C 1.52996 * 109.47295 * 154.99872 * 5 3 2 9 9 N 1.46495 * 109.47168 * 179.97438 * 8 5 3 10 10 C 1.34779 * 120.00324 * 180.02562 * 9 8 5 11 11 O 1.21278 * 119.99703 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00201 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.47044 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47493 * 305.98058 * 13 12 10 15 15 C 1.50699 * 109.46802 * 65.98063 * 13 12 10 16 16 H 1.07996 * 120.00319 * 26.91275 * 15 13 12 17 17 C 1.37882 * 120.00193 * 206.90875 * 15 13 12 18 18 N 1.31519 * 119.99874 * 353.28371 * 17 15 13 19 19 Si 1.86801 * 120.00294 * 173.55447 * 17 15 13 20 20 H 1.48497 * 109.47144 * 269.72519 * 19 17 15 21 21 H 1.48498 * 109.46829 * 29.72826 * 19 17 15 22 22 H 1.48507 * 109.46835 * 149.72714 * 19 17 15 23 23 C 1.50699 * 109.47289 * 185.97873 * 13 12 10 24 24 C 1.38237 * 119.99863 * 294.44402 * 23 13 12 25 25 C 1.38237 * 119.99818 * 179.78435 * 24 23 13 26 26 C 1.38229 * 120.00057 * 0.44553 * 25 24 23 27 27 C 1.38236 * 119.99936 * 359.80698 * 26 25 24 28 28 C 1.38230 * 120.00146 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47188 * 59.99486 * 1 2 3 30 30 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46797 * 299.99943 * 1 2 3 32 32 H 1.09006 * 109.47052 * 299.99568 * 6 5 3 33 33 H 1.09005 * 109.47567 * 59.99304 * 6 5 3 34 34 H 1.09002 * 109.47398 * 179.97438 * 6 5 3 35 35 H 0.96699 * 113.99706 * 60.00269 * 7 5 3 36 36 H 1.09006 * 109.46938 * 60.00438 * 8 5 3 37 37 H 1.08995 * 109.47200 * 300.00391 * 8 5 3 38 38 H 0.97006 * 119.99754 * 0.02562 * 9 8 5 39 39 H 1.09006 * 109.46831 * 60.00366 * 12 10 9 40 40 H 1.08995 * 109.47505 * 300.00197 * 12 10 9 41 41 H 0.97005 * 119.99795 * 354.69035 * 18 17 15 42 42 H 1.07999 * 119.99895 * 359.97438 * 24 23 13 43 43 H 1.08004 * 120.00271 * 180.27444 * 25 24 23 44 44 H 1.08007 * 120.00590 * 179.83396 * 26 25 24 45 45 H 1.08003 * 120.00202 * 180.02562 * 27 26 25 46 46 H 1.08004 * 120.00248 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0828 1.1757 1.4361 7 8 4.0995 0.1978 -0.7738 8 6 4.0070 2.6073 -0.6101 9 7 5.4699 2.6842 -0.6101 10 6 6.0874 3.7762 -1.1029 11 8 5.4318 4.6954 -1.5458 12 6 7.5923 3.8556 -1.1023 13 6 8.0329 5.1879 -1.7120 14 1 7.5783 5.3054 -2.6956 15 6 7.5945 6.3189 -0.8177 16 1 7.4632 6.1505 0.2410 17 6 7.3611 7.5688 -1.3510 18 7 7.6466 7.8094 -2.6121 19 14 6.6465 8.9225 -0.2805 20 1 5.1642 8.8894 -0.3643 21 1 7.0675 8.7137 1.1282 22 1 7.1398 10.2407 -0.7544 23 6 9.5337 5.2068 -1.8466 24 6 10.3294 5.1891 -0.7163 25 6 11.7061 5.2019 -0.8400 26 6 12.2871 5.2418 -2.0936 27 6 11.4914 5.2647 -3.2238 28 6 10.1148 5.2473 -3.1003 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.6762 1.9972 2.0260 33 1 3.7689 0.2265 1.8705 34 1 5.1714 1.2323 1.4357 35 1 3.8134 0.1976 -1.6975 36 1 3.6003 3.4288 -0.0203 37 1 3.6390 2.6779 -1.6337 38 1 5.9942 1.9492 -0.2554 39 1 7.9996 3.0342 -1.6919 40 1 7.9595 3.7850 -0.0785 41 1 8.0919 7.1330 -3.1461 42 1 9.8754 5.1622 0.2632 43 1 12.3279 5.1837 0.0430 44 1 13.3628 5.2545 -2.1903 45 1 11.9453 5.2954 -4.2033 46 1 9.4931 5.2657 -3.9832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360182064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:30 Heat of formation + Delta-G solvation = -176.067693 kcal Electronic energy + Delta-G solvation = -29001.682182 eV Core-core repulsion = 24855.300829 eV Total energy + Delta-G solvation = -4146.381353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.07459 -40.81328 -39.88156 -38.76590 -37.70818 -36.16775 -35.31409 -33.32598 -32.52644 -31.59057 -30.54083 -28.87304 -28.16730 -26.69972 -25.02382 -24.18259 -23.17110 -21.85639 -21.61480 -21.14103 -19.63821 -18.89620 -18.30900 -18.05866 -17.71895 -17.35437 -16.80402 -16.57746 -16.24312 -15.96437 -15.67229 -15.64427 -15.40064 -15.14956 -14.65281 -14.62115 -14.25064 -14.03399 -13.96091 -13.66336 -13.63905 -13.50988 -13.40048 -13.14740 -13.05578 -12.78252 -12.66808 -12.59995 -12.04552 -12.00166 -11.94561 -11.91904 -11.70844 -11.49818 -11.26046 -10.80951 -10.57781 -10.37429 -10.09708 -9.62328 -9.25581 -8.43331 -6.10341 0.69630 0.75157 0.81684 1.31057 1.48238 1.58355 1.71976 1.85588 2.33975 2.62313 2.89281 3.12500 3.19843 3.37396 3.51952 3.63045 4.06305 4.15215 4.23068 4.26188 4.29813 4.31429 4.37077 4.46307 4.50873 4.54197 4.61272 4.65778 4.66049 4.71113 4.85052 4.88815 5.02666 5.10488 5.15498 5.25185 5.40785 5.42516 5.46064 5.76550 5.83889 5.96359 6.25437 6.25879 6.32840 6.42305 6.54756 6.65908 6.79705 7.47248 7.64818 8.97046 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.002970 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.761326 B = 9424.993373 C =10777.701427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.345 6.345 3 C 0.443 3.557 4 O -0.526 6.526 5 C 0.156 3.844 6 C -0.143 4.143 7 O -0.529 6.529 8 C 0.110 3.890 9 N -0.714 5.714 10 C 0.513 3.487 11 O -0.560 6.560 12 C -0.109 4.109 13 C 0.074 3.926 14 H 0.004 0.996 15 C -0.557 4.557 16 H 0.041 0.959 17 C -0.025 4.025 18 N -0.945 5.945 19 Si 1.097 2.903 20 H -0.293 1.293 21 H -0.265 1.265 22 H -0.287 1.287 23 C -0.056 4.056 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.126 4.126 28 C -0.153 4.153 29 H 0.061 0.939 30 H 0.137 0.863 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.416 0.584 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.261 0.739 42 H 0.115 0.885 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.134 0.866 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -20.592 7.018 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.260 6.260 3 C 0.285 3.715 4 O -0.415 6.415 5 C 0.113 3.887 6 C -0.200 4.200 7 O -0.336 6.336 8 C -0.015 4.015 9 N -0.371 5.371 10 C 0.301 3.699 11 O -0.436 6.436 12 C -0.149 4.149 13 C 0.055 3.945 14 H 0.022 0.978 15 C -0.595 4.595 16 H 0.059 0.941 17 C -0.223 4.223 18 N -0.583 5.583 19 Si 0.922 3.078 20 H -0.220 1.220 21 H -0.190 1.190 22 H -0.213 1.213 23 C -0.057 4.057 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.162 4.162 27 C -0.143 4.143 28 C -0.171 4.171 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.249 0.751 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.255 0.745 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.152 0.848 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.641 -18.248 7.241 20.173 hybrid contribution -0.365 -1.048 -0.854 1.400 sum -5.005 -19.295 6.387 20.932 Atomic orbital electron populations 1.23647 0.74635 1.06050 1.02637 1.86568 1.24954 1.31631 1.82871 1.24737 0.92875 0.81781 0.72081 1.90739 1.67648 1.37512 1.45584 1.21058 0.83787 0.87112 0.96750 1.21897 1.04117 1.04739 0.89270 1.86603 1.72688 1.47086 1.27270 1.21554 0.82320 0.96497 1.01155 1.45668 1.05745 1.20616 1.65097 1.21054 0.91434 0.81002 0.76412 1.90757 1.67929 1.38541 1.46392 1.21563 0.90212 0.99370 1.03728 1.17691 0.88092 0.92868 0.95882 0.97798 1.21844 1.47204 0.95909 0.94498 0.94070 1.26683 0.95863 1.01836 0.97949 1.70786 1.40957 1.38040 1.08561 0.83206 0.75806 0.74000 0.74762 1.21967 1.18991 1.21333 1.20622 0.97237 0.94681 0.93168 1.21015 0.93873 1.00986 0.98035 1.21410 0.94341 1.00044 0.98467 1.21308 1.00526 1.02224 0.92138 1.21293 0.92906 1.00368 0.99775 1.21129 0.95786 1.03464 0.96729 0.92026 0.84541 0.91813 0.90167 0.88838 0.88456 0.75096 0.91674 0.92157 0.74523 0.88582 0.88107 0.92827 0.86672 0.83941 0.83615 0.84782 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.56 113.37 1.20 1.49 16 2 O -0.34 -6.23 10.32 -46.47 -0.48 -6.71 16 3 C 0.44 9.84 6.80 71.24 0.48 10.32 16 4 O -0.53 -15.38 15.84 21.97 0.35 -15.03 16 5 C 0.16 3.06 1.01 -11.54 -0.01 3.05 16 6 C -0.14 -2.27 8.65 71.98 0.62 -1.65 16 7 O -0.53 -8.48 12.52 -135.70 -1.70 -10.18 16 8 C 0.11 3.01 4.31 86.38 0.37 3.38 16 9 N -0.71 -19.90 5.15 -463.08 -2.38 -22.29 16 10 C 0.51 20.37 7.58 87.66 0.66 21.04 16 11 O -0.56 -29.34 15.02 -3.02 -0.05 -29.38 16 12 C -0.11 -4.11 4.95 29.85 0.15 -3.97 16 13 C 0.07 3.63 1.23 -12.29 -0.02 3.61 16 14 H 0.00 0.22 6.59 -2.39 -0.02 0.20 16 15 C -0.56 -31.07 6.35 25.60 0.16 -30.91 16 16 H 0.04 2.27 7.82 -2.91 -0.02 2.25 16 17 C -0.02 -1.49 5.45 84.66 0.46 -1.03 16 18 N -0.95 -60.71 13.56 21.45 0.29 -60.42 16 19 Si 1.10 54.79 29.91 68.60 2.05 56.84 16 20 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 23 C -0.06 -2.50 4.53 -19.87 -0.09 -2.59 16 24 C -0.12 -4.73 8.90 22.27 0.20 -4.53 16 25 C -0.12 -4.02 10.05 22.27 0.22 -3.80 16 26 C -0.14 -4.41 10.05 22.27 0.22 -4.19 16 27 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 28 C -0.15 -6.43 9.18 22.27 0.20 -6.23 16 29 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.14 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.10 1.34 6.86 -2.39 -0.02 1.33 16 35 H 0.40 4.43 9.04 -74.06 -0.67 3.76 16 36 H 0.06 2.14 7.87 -2.38 -0.02 2.12 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.42 8.56 7.19 -92.70 -0.67 7.89 16 39 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 40 H 0.10 3.40 7.97 -2.39 -0.02 3.38 16 41 H 0.26 16.73 6.24 -92.70 -0.58 16.15 16 42 H 0.12 4.39 7.85 -2.91 -0.02 4.37 16 43 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 45 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 46 H 0.09 4.15 7.95 -2.91 -0.02 4.13 16 Total: -1.00 -83.06 389.81 3.01 -80.05 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.14 Total: 27.21 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 5.07 Total: -20.08 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.09 Total: -82.71 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -1.88 Total: -61.30 kcal Atomic # 14 Polarization: 54.79 SS G_CDS: 2.05 Total: 56.84 kcal Total: -83.06 3.01 -80.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360182064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.021 kcal (2) G-P(sol) polarization free energy of solvation -83.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds