Wall clock time and date at job start Tue Mar 31 2020 19:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47539 * 2 1 4 4 O 1.42896 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.35713 * 117.00126 * 180.02562 * 4 3 2 6 6 C 1.39190 * 119.86159 * 359.97438 * 5 4 3 7 7 C 1.37547 * 120.24187 * 179.76241 * 6 5 4 8 8 C 1.39855 * 119.96151 * 0.53535 * 7 6 5 9 9 C 1.47301 * 120.13523 * 179.74143 * 8 7 6 10 10 O 1.21618 * 119.99925 * 155.25734 * 9 8 7 11 11 N 1.34776 * 120.00039 * 335.25487 * 9 8 7 12 12 C 1.47576 * 134.49313 * 174.68060 * 11 9 8 13 13 C 1.53940 * 86.11635 * 155.36261 * 12 11 9 14 14 O 1.42900 * 113.73946 * 269.15083 * 13 12 11 15 15 C 1.50699 * 113.74379 * 137.95396 * 13 12 11 16 16 H 1.08003 * 120.00059 * 1.92361 * 15 13 12 17 17 C 1.37878 * 120.00130 * 181.92131 * 15 13 12 18 18 N 1.31513 * 120.00031 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99925 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47306 * 180.02562 * 19 17 15 21 21 H 1.48510 * 109.46909 * 300.00126 * 19 17 15 22 22 H 1.48497 * 109.47408 * 59.99985 * 19 17 15 23 23 C 1.47813 * 134.45466 * 354.54942 * 11 9 8 24 24 C 1.40305 * 119.73210 * 359.47263 * 8 7 6 25 25 O 1.35648 * 120.12380 * 180.27369 * 24 8 7 26 26 C 1.42897 * 117.00066 * 179.97438 * 25 24 8 27 27 C 1.38446 * 119.75502 * 0.24222 * 24 8 7 28 28 H 1.08998 * 109.46941 * 59.99386 * 1 2 3 29 29 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46414 * 299.99937 * 1 2 3 31 31 H 1.09004 * 109.46908 * 239.99886 * 2 1 3 32 32 H 1.09004 * 109.47338 * 120.00613 * 2 1 3 33 33 H 1.09004 * 109.47114 * 60.00012 * 3 2 1 34 34 H 1.09004 * 109.47306 * 300.00632 * 3 2 1 35 35 H 1.08005 * 119.87711 * 0.04706 * 6 5 4 36 36 H 1.07999 * 120.01964 * 180.27739 * 7 6 5 37 37 H 1.08994 * 113.76951 * 41.05741 * 12 11 9 38 38 H 1.09006 * 113.76845 * 269.66275 * 12 11 9 39 39 H 0.96709 * 113.99862 * 178.07747 * 14 13 12 40 40 H 0.96998 * 119.99692 * 179.97438 * 18 17 15 41 41 H 1.09007 * 113.76601 * 90.38025 * 23 11 9 42 42 H 1.08995 * 113.83958 * 318.91996 * 23 11 9 43 43 H 1.08991 * 109.47309 * 299.99975 * 26 25 24 44 44 H 1.09001 * 109.47093 * 59.99997 * 26 25 24 45 45 H 1.09008 * 109.46927 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.98112 * 180.02562 * 27 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0853 2.6516 -0.0001 6 6 3.3244 3.8171 0.0003 7 6 3.9408 5.0467 0.0057 8 6 5.3370 5.1282 -0.0006 9 6 6.0010 6.4431 -0.0006 10 8 7.1310 6.5536 0.4353 11 7 5.3564 7.5236 -0.4836 12 6 5.6607 8.9662 -0.5486 13 6 4.7030 9.0073 -1.7531 14 8 5.3495 8.7943 -3.0096 15 6 3.7869 10.2038 -1.7593 16 1 3.8652 10.9480 -0.9805 17 6 2.8487 10.3486 -2.7592 18 7 2.7529 9.4422 -3.7073 19 14 1.7135 11.8321 -2.7673 20 1 0.8034 11.7527 -3.9380 21 1 0.9114 11.8484 -1.5175 22 1 2.5228 13.0743 -2.8522 23 6 4.0614 7.7384 -1.1632 24 6 6.1026 3.9525 -0.0011 25 8 7.4573 4.0223 -0.0016 26 6 8.1707 2.7841 -0.0016 27 6 5.4704 2.7208 -0.0006 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 2.2461 3.7558 0.0011 36 1 3.3470 5.9488 0.0106 37 1 6.6974 9.1854 -0.8038 38 1 5.3056 9.5294 0.3145 39 1 4.7472 8.7902 -3.7661 40 1 2.0926 9.5439 -4.4106 41 1 3.2355 7.9402 -0.4811 42 1 3.8236 6.9792 -1.9082 43 1 7.9072 2.2130 0.8885 44 1 7.9065 2.2126 -0.8914 45 1 9.2426 2.9824 -0.0025 46 1 6.0562 1.8135 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450753377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:52 Heat of formation + Delta-G solvation = -98.326667 kcal Electronic energy + Delta-G solvation = -29155.452145 eV Core-core repulsion = 25012.441895 eV Total energy + Delta-G solvation = -4143.010249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67139 -39.43143 -38.94958 -37.10641 -36.36901 -34.21187 -33.85346 -32.19209 -30.84437 -30.07898 -28.45733 -27.14300 -26.86108 -25.28930 -25.21765 -23.00393 -22.66063 -21.25132 -20.11610 -19.04408 -18.30372 -17.44072 -16.72905 -16.57523 -16.46123 -16.34482 -15.71693 -15.37489 -15.05255 -14.90998 -14.47119 -14.36760 -14.25987 -13.93315 -13.47329 -13.21951 -13.01970 -12.83453 -12.59018 -12.46383 -12.34767 -12.11654 -11.92252 -11.70748 -11.65558 -11.52735 -11.48887 -11.11977 -11.05162 -11.02786 -10.92730 -10.58658 -10.50301 -10.25603 -9.54909 -9.11229 -8.73631 -8.64007 -8.33757 -8.06452 -7.68508 -6.36523 -4.46969 1.11991 1.40882 2.86929 3.17203 3.23138 3.25275 3.27844 3.34900 3.63779 4.07727 4.20417 4.50801 4.53151 4.73986 4.83610 4.86860 4.94761 4.99672 5.03056 5.07931 5.09218 5.15023 5.23873 5.33584 5.45263 5.52546 5.58287 5.60066 5.62852 5.69230 5.83027 5.95318 6.03030 6.20494 6.28919 6.35244 6.45713 6.51356 6.53552 6.71432 6.78449 7.13951 7.18121 7.45089 7.65204 7.85874 8.55955 8.58840 8.93961 9.24174 9.47476 10.69885 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.003389 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.526243 B = 8259.649182 C =10545.128026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.055 3.945 4 O -0.314 6.314 5 C 0.186 3.814 6 C -0.254 4.254 7 C -0.006 4.006 8 C -0.190 4.190 9 C 0.578 3.422 10 O -0.548 6.548 11 N -0.631 5.631 12 C 0.114 3.886 13 C 0.239 3.761 14 O -0.571 6.571 15 C -0.537 4.537 16 H 0.071 0.929 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.076 3.924 24 C 0.217 3.783 25 O -0.279 6.279 26 C 0.022 3.978 27 C -0.259 4.259 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.391 0.609 40 H 0.273 0.727 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 -17.443 6.128 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.020 4.020 4 O -0.227 6.227 5 C 0.140 3.860 6 C -0.272 4.272 7 C -0.025 4.025 8 C -0.194 4.194 9 C 0.368 3.632 10 O -0.427 6.427 11 N -0.365 5.365 12 C -0.008 4.008 13 C 0.198 3.802 14 O -0.383 6.383 15 C -0.575 4.575 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.211 1.211 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.047 4.047 24 C 0.168 3.832 25 O -0.189 6.189 26 C -0.074 4.074 27 C -0.278 4.278 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.245 0.755 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.218 -17.657 6.624 18.988 hybrid contribution -1.513 0.482 -0.426 1.644 sum -3.731 -17.175 6.198 18.636 Atomic orbital electron populations 1.21695 0.94144 1.02510 1.02439 1.21487 0.96133 0.94790 1.03646 1.22957 0.78082 0.98884 1.02034 1.85971 1.21668 1.27160 1.87924 1.18761 0.91355 0.84016 0.91877 1.21054 1.00215 0.91799 1.14177 1.21238 0.92518 0.98094 0.90603 1.19315 0.92962 0.92113 1.15006 1.17462 0.85267 0.82778 0.77645 1.90739 1.18046 1.85485 1.48468 1.50069 1.21955 1.06910 1.57574 1.23418 1.00944 0.78383 0.98051 1.19838 0.87789 0.90580 0.82031 1.86079 1.39832 1.94957 1.17400 1.21479 1.16832 1.07848 1.11358 0.91121 1.25064 0.96766 0.96492 0.94699 1.69404 1.36188 1.34491 1.13674 0.86413 0.80056 0.82458 0.77707 1.21060 1.19937 1.19884 1.24364 0.85583 1.00346 0.94415 1.18628 0.82958 0.91707 0.89915 1.86377 1.14416 1.31563 1.86585 1.23150 0.97339 0.85665 1.01209 1.20230 0.92568 0.97218 1.17802 0.92173 0.91754 0.92281 0.90819 0.90896 0.91660 0.91508 0.84915 0.83887 0.91117 0.89678 0.75482 0.91696 0.90144 0.91187 0.92581 0.92591 0.88049 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.87 6.30 -26.73 -0.17 -1.03 16 3 C 0.06 0.50 4.73 37.16 0.18 0.67 16 4 O -0.31 -3.79 10.12 -18.84 -0.19 -3.98 16 5 C 0.19 2.57 6.69 -39.06 -0.26 2.31 16 6 C -0.25 -3.49 9.01 -39.48 -0.36 -3.85 16 7 C -0.01 -0.10 8.81 -39.23 -0.35 -0.44 16 8 C -0.19 -3.61 5.83 -104.83 -0.61 -4.23 16 9 C 0.58 12.98 7.75 -12.58 -0.10 12.88 16 10 O -0.55 -13.76 16.28 -15.05 -0.24 -14.00 16 11 N -0.63 -13.98 3.58 -179.46 -0.64 -14.63 16 12 C 0.11 2.55 8.23 -2.97 -0.02 2.53 16 13 C 0.24 5.78 1.40 -90.85 -0.13 5.65 16 14 O -0.57 -14.94 13.48 -35.23 -0.48 -15.42 16 15 C -0.54 -13.38 8.61 -34.44 -0.30 -13.68 16 16 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 17 C 0.07 1.79 5.39 -17.82 -0.10 1.69 16 18 N -0.90 -22.53 11.20 55.43 0.62 -21.91 16 19 Si 0.91 19.28 29.54 -169.99 -5.02 14.26 16 20 H -0.29 -6.05 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 C 0.08 1.63 5.68 -2.84 -0.02 1.61 16 24 C 0.22 3.75 6.67 -38.73 -0.26 3.49 16 25 O -0.28 -4.88 8.85 -38.95 -0.34 -5.22 16 26 C 0.02 0.24 9.81 101.05 0.99 1.24 16 27 C -0.26 -3.72 8.96 -39.34 -0.35 -4.08 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.53 7.65 -51.93 -0.40 0.14 16 34 H 0.07 0.57 7.65 -51.93 -0.40 0.18 16 35 H 0.13 1.47 6.27 -52.48 -0.33 1.14 16 36 H 0.14 2.25 5.53 -52.49 -0.29 1.96 16 37 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 38 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 39 H 0.39 10.23 6.60 45.56 0.30 10.53 16 40 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.08 1.61 7.70 -51.92 -0.40 1.21 16 42 H 0.07 1.53 7.86 -51.93 -0.41 1.12 16 43 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 44 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 45 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 46 H 0.14 1.66 6.29 -52.48 -0.33 1.33 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -31.00 380.24 -8.01 -39.02 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.97 Total: 11.85 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.48 Total: 4.30 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.02 Total: -36.54 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.26 Total: -38.62 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.00 -8.01 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450753377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.308 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds