Wall clock time and date at job start Tue Mar 31 2020 19:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47539 * 2 1 4 4 O 1.42896 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.35713 * 117.00126 * 180.02562 * 4 3 2 6 6 C 1.39190 * 119.86159 * 359.97438 * 5 4 3 7 7 C 1.37547 * 120.24187 * 179.76241 * 6 5 4 8 8 C 1.39855 * 119.96151 * 0.53535 * 7 6 5 9 9 C 1.47301 * 120.13523 * 179.74143 * 8 7 6 10 10 O 1.21618 * 119.99925 * 155.25734 * 9 8 7 11 11 N 1.34776 * 120.00039 * 335.25487 * 9 8 7 12 12 C 1.47576 * 134.49313 * 174.68060 * 11 9 8 13 13 C 1.53940 * 86.11635 * 155.36261 * 12 11 9 14 14 O 1.42900 * 113.73946 * 269.15083 * 13 12 11 15 15 C 1.50699 * 113.74379 * 137.95396 * 13 12 11 16 16 H 1.08003 * 120.00059 * 1.92361 * 15 13 12 17 17 C 1.37878 * 120.00130 * 181.92131 * 15 13 12 18 18 N 1.31513 * 120.00031 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99925 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47306 * 180.02562 * 19 17 15 21 21 H 1.48510 * 109.46909 * 300.00126 * 19 17 15 22 22 H 1.48497 * 109.47408 * 59.99985 * 19 17 15 23 23 C 1.47813 * 134.45466 * 354.54942 * 11 9 8 24 24 C 1.40305 * 119.73210 * 359.47263 * 8 7 6 25 25 O 1.35648 * 120.12380 * 180.27369 * 24 8 7 26 26 C 1.42897 * 117.00066 * 179.97438 * 25 24 8 27 27 C 1.38446 * 119.75502 * 0.24222 * 24 8 7 28 28 H 1.08998 * 109.46941 * 59.99386 * 1 2 3 29 29 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46414 * 299.99937 * 1 2 3 31 31 H 1.09004 * 109.46908 * 239.99886 * 2 1 3 32 32 H 1.09004 * 109.47338 * 120.00613 * 2 1 3 33 33 H 1.09004 * 109.47114 * 60.00012 * 3 2 1 34 34 H 1.09004 * 109.47306 * 300.00632 * 3 2 1 35 35 H 1.08005 * 119.87711 * 0.04706 * 6 5 4 36 36 H 1.07999 * 120.01964 * 180.27739 * 7 6 5 37 37 H 1.08994 * 113.76951 * 41.05741 * 12 11 9 38 38 H 1.09006 * 113.76845 * 269.66275 * 12 11 9 39 39 H 0.96709 * 113.99862 * 178.07747 * 14 13 12 40 40 H 0.96998 * 119.99692 * 179.97438 * 18 17 15 41 41 H 1.09007 * 113.76601 * 90.38025 * 23 11 9 42 42 H 1.08995 * 113.83958 * 318.91996 * 23 11 9 43 43 H 1.08991 * 109.47309 * 299.99975 * 26 25 24 44 44 H 1.09001 * 109.47093 * 59.99997 * 26 25 24 45 45 H 1.09008 * 109.46927 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.98112 * 180.02562 * 27 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0853 2.6516 -0.0001 6 6 3.3244 3.8171 0.0003 7 6 3.9408 5.0467 0.0057 8 6 5.3370 5.1282 -0.0006 9 6 6.0010 6.4431 -0.0006 10 8 7.1310 6.5536 0.4353 11 7 5.3564 7.5236 -0.4836 12 6 5.6607 8.9662 -0.5486 13 6 4.7030 9.0073 -1.7531 14 8 5.3495 8.7943 -3.0096 15 6 3.7869 10.2038 -1.7593 16 1 3.8652 10.9480 -0.9805 17 6 2.8487 10.3486 -2.7592 18 7 2.7529 9.4422 -3.7073 19 14 1.7135 11.8321 -2.7673 20 1 0.8034 11.7527 -3.9380 21 1 0.9114 11.8484 -1.5175 22 1 2.5228 13.0743 -2.8522 23 6 4.0614 7.7384 -1.1632 24 6 6.1026 3.9525 -0.0011 25 8 7.4573 4.0223 -0.0016 26 6 8.1707 2.7841 -0.0016 27 6 5.4704 2.7208 -0.0006 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 2.2461 3.7558 0.0011 36 1 3.3470 5.9488 0.0106 37 1 6.6974 9.1854 -0.8038 38 1 5.3056 9.5294 0.3145 39 1 4.7472 8.7902 -3.7661 40 1 2.0926 9.5439 -4.4106 41 1 3.2355 7.9402 -0.4811 42 1 3.8236 6.9792 -1.9082 43 1 7.9072 2.2130 0.8885 44 1 7.9065 2.2126 -0.8914 45 1 9.2426 2.9824 -0.0025 46 1 6.0562 1.8135 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450753377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:51 Heat of formation + Delta-G solvation = -118.417657 kcal Electronic energy + Delta-G solvation = -29156.323355 eV Core-core repulsion = 25012.441895 eV Total energy + Delta-G solvation = -4143.881460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90083 -40.91223 -40.17026 -38.80004 -37.56741 -35.78390 -34.83863 -34.13163 -32.07755 -31.27895 -30.05811 -28.24127 -27.64873 -27.07675 -26.86745 -24.28987 -23.55389 -22.12408 -21.75628 -20.47288 -19.61610 -19.26802 -18.20030 -17.81287 -17.47200 -17.36129 -17.14521 -16.82206 -16.66010 -16.13522 -15.96289 -15.82863 -15.38786 -15.06145 -14.89863 -14.46258 -14.28465 -14.22890 -13.86133 -13.66698 -13.58832 -13.39635 -13.36348 -12.98141 -12.83397 -12.74277 -12.54041 -12.52736 -12.39024 -12.23139 -12.19502 -11.86152 -11.79783 -11.48504 -11.35043 -10.92196 -10.61297 -10.21685 -9.76146 -9.58403 -9.17141 -8.23426 -6.40858 -0.13782 0.24786 1.50080 1.52382 1.59448 1.81592 1.92244 1.98329 2.31351 2.43095 2.69232 2.98892 3.47413 3.59207 3.81457 3.90172 3.95117 3.96384 4.07833 4.10916 4.17877 4.30707 4.34161 4.37243 4.40583 4.51954 4.56618 4.61021 4.61881 4.68106 4.69604 4.79192 4.83459 4.90927 5.05622 5.13703 5.14210 5.17802 5.19985 5.27003 5.32776 5.42785 5.74676 5.95543 6.19247 6.34780 6.64565 6.86019 7.21818 7.32807 7.46244 8.82422 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.003389 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.526243 B = 8259.649182 C =10545.128026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.044 3.956 4 O -0.315 6.315 5 C 0.197 3.803 6 C -0.246 4.246 7 C -0.007 4.007 8 C -0.230 4.230 9 C 0.572 3.428 10 O -0.587 6.587 11 N -0.634 5.634 12 C 0.112 3.888 13 C 0.220 3.780 14 O -0.588 6.588 15 C -0.556 4.556 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.915 5.915 19 Si 0.969 3.031 20 H -0.283 1.283 21 H -0.266 1.266 22 H -0.277 1.277 23 C 0.095 3.905 24 C 0.207 3.793 25 O -0.316 6.316 26 C 0.012 3.988 27 C -0.256 4.256 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.163 0.837 36 H 0.143 0.857 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.387 0.613 40 H 0.275 0.725 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 -19.070 6.611 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.030 4.030 4 O -0.228 6.228 5 C 0.149 3.851 6 C -0.265 4.265 7 C -0.026 4.026 8 C -0.233 4.233 9 C 0.364 3.636 10 O -0.469 6.469 11 N -0.367 5.367 12 C -0.010 4.010 13 C 0.179 3.821 14 O -0.399 6.399 15 C -0.594 4.594 16 H 0.091 0.909 17 C -0.166 4.166 18 N -0.555 5.555 19 Si 0.794 3.206 20 H -0.208 1.208 21 H -0.190 1.190 22 H -0.203 1.203 23 C -0.027 4.027 24 C 0.158 3.842 25 O -0.228 6.228 26 C -0.082 4.082 27 C -0.275 4.275 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.181 0.819 36 H 0.161 0.839 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.241 0.759 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.133 0.867 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.390 -19.308 7.112 21.039 hybrid contribution -0.839 0.854 -0.591 1.335 sum -5.229 -18.454 6.521 20.258 Atomic orbital electron populations 1.21696 0.92950 1.03239 1.02707 1.21498 0.97018 0.93488 1.03693 1.23306 0.76267 1.00499 1.02935 1.85998 1.23567 1.26040 1.87193 1.18861 0.91345 0.84718 0.90125 1.21311 1.01699 0.90731 1.12749 1.21249 0.91386 0.99239 0.90688 1.19250 0.94301 0.90841 1.18949 1.18085 0.84925 0.83890 0.76667 1.90689 1.19764 1.86208 1.50289 1.50110 1.22141 1.06792 1.57691 1.23465 0.99885 0.79348 0.98320 1.20132 0.88584 0.91870 0.81535 1.86068 1.40489 1.95173 1.18213 1.21674 1.17361 1.08358 1.11987 0.90896 1.25739 0.97885 0.98765 0.94253 1.69473 1.36532 1.35603 1.13920 0.85444 0.78190 0.79068 0.77918 1.20814 1.19046 1.20265 1.24175 0.85655 0.98655 0.94238 1.18766 0.83152 0.92127 0.90107 1.86321 1.14869 1.34920 1.86656 1.23485 0.97583 0.84233 1.02892 1.20407 0.93206 0.96932 1.16983 0.92079 0.90860 0.91849 0.90968 0.90723 0.90458 0.90854 0.81932 0.83898 0.92643 0.87617 0.75913 0.91479 0.88370 0.91701 0.90678 0.90960 0.86746 0.81854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.53 16 2 C -0.12 -1.35 6.30 30.59 0.19 -1.15 16 3 C 0.04 0.65 4.73 71.98 0.34 0.99 16 4 O -0.32 -6.65 10.12 -90.34 -0.91 -7.56 16 5 C 0.20 4.95 6.69 22.61 0.15 5.10 16 6 C -0.25 -6.22 9.01 22.34 0.20 -6.02 16 7 C -0.01 -0.22 8.81 22.50 0.20 -0.02 16 8 C -0.23 -8.85 5.83 -20.00 -0.12 -8.96 16 9 C 0.57 26.52 7.75 86.63 0.67 27.20 16 10 O -0.59 -30.77 16.28 15.33 0.25 -30.52 16 11 N -0.63 -28.75 3.58 -843.79 -3.02 -31.76 16 12 C 0.11 5.14 8.23 86.48 0.71 5.85 16 13 C 0.22 10.77 1.40 -10.88 -0.02 10.75 16 14 O -0.59 -31.61 13.48 -148.98 -2.01 -33.62 16 15 C -0.56 -27.64 8.61 25.60 0.22 -27.42 16 16 H 0.07 3.51 7.81 -2.91 -0.02 3.48 16 17 C 0.03 1.68 5.39 84.66 0.46 2.13 16 18 N -0.92 -45.71 11.20 21.45 0.24 -45.47 16 19 Si 0.97 38.85 29.54 68.60 2.03 40.88 16 20 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 23 C 0.10 4.12 5.68 86.44 0.49 4.61 16 24 C 0.21 7.16 6.67 22.82 0.15 7.31 16 25 O -0.32 -11.21 8.85 -70.21 -0.62 -11.83 16 26 C 0.01 0.26 9.81 113.37 1.11 1.37 16 27 C -0.26 -6.93 8.96 22.43 0.20 -6.73 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 33 H 0.08 0.98 7.65 -2.39 -0.02 0.97 16 34 H 0.07 1.02 7.65 -2.38 -0.02 1.00 16 35 H 0.16 3.04 6.27 -2.91 -0.02 3.03 16 36 H 0.14 4.40 5.53 -2.91 -0.02 4.39 16 37 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.11 4.33 8.09 -2.38 -0.02 4.31 16 39 H 0.39 20.80 6.60 -74.05 -0.49 20.31 16 40 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 41 H 0.10 3.86 7.70 -2.38 -0.02 3.85 16 42 H 0.06 2.85 7.86 -2.39 -0.02 2.83 16 43 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 44 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 45 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.16 3.48 6.29 -2.91 -0.02 3.46 16 Total: -1.00 -67.79 380.24 2.16 -65.64 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: 0.52 Total: 39.77 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 5.68 Total: 14.49 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.78 Total: -77.24 kcal Atomic # 8 Polarization: -80.24 SS G_CDS: -3.30 Total: -83.53 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -67.79 2.16 -65.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450753377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.781 kcal (2) G-P(sol) polarization free energy of solvation -67.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds