Wall clock time and date at job start Tue Mar 31 2020 18:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00286 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46737 * 60.00316 * 4 3 2 6 6 O 1.42893 * 109.47567 * 300.00270 * 4 3 2 7 7 C 1.53006 * 109.47319 * 179.97438 * 4 3 2 8 8 N 1.46491 * 109.47184 * 185.00265 * 7 4 3 9 9 C 1.34783 * 120.00149 * 180.02562 * 8 7 4 10 10 O 1.21720 * 119.99754 * 359.97438 * 9 8 7 11 11 C 1.46254 * 120.00211 * 180.02562 * 9 8 7 12 12 C 1.35024 * 119.99741 * 186.98126 * 11 9 8 13 13 C 1.46955 * 120.00243 * 10.95710 * 12 11 9 14 14 C 1.40017 * 120.10355 * 226.00587 * 13 12 11 15 15 C 1.37602 * 119.89826 * 179.79356 * 14 13 12 16 16 C 1.39177 * 120.10029 * 0.48531 * 15 14 13 17 17 O 1.35574 * 119.89819 * 179.77071 * 16 15 14 18 18 C 1.34779 * 116.99846 * 174.20145 * 17 16 15 19 19 H 1.07997 * 120.00295 * 5.06535 * 18 17 16 20 20 C 1.38715 * 119.99787 * 185.06328 * 18 17 16 21 21 N 1.31511 * 119.99903 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00074 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47300 * 89.99772 * 22 20 18 24 24 H 1.48507 * 109.47126 * 209.99836 * 22 20 18 25 25 H 1.48501 * 109.47126 * 329.99314 * 22 20 18 26 26 C 1.39170 * 120.20246 * 359.74075 * 16 15 14 27 27 C 1.37600 * 120.10304 * 0.02840 * 26 16 15 28 28 H 1.08993 * 109.47038 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46643 * 300.00386 * 1 2 3 30 30 H 1.08994 * 109.46937 * 59.99477 * 1 2 3 31 31 H 1.09004 * 109.46945 * 60.00172 * 3 2 1 32 32 H 1.09001 * 109.47157 * 299.99879 * 3 2 1 33 33 H 1.08999 * 109.47031 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.46983 * 299.99633 * 5 4 3 35 35 H 1.09001 * 109.47368 * 59.99947 * 5 4 3 36 36 H 0.96706 * 113.99648 * 299.99690 * 6 4 3 37 37 H 1.08994 * 109.46599 * 64.99897 * 7 4 3 38 38 H 1.08998 * 109.46804 * 305.00460 * 7 4 3 39 39 H 0.96999 * 120.00504 * 0.02562 * 8 7 4 40 40 H 1.07997 * 120.00125 * 7.24622 * 11 9 8 41 41 H 1.07999 * 119.99294 * 190.96368 * 12 11 9 42 42 H 1.07999 * 120.04955 * 359.97438 * 14 13 12 43 43 H 1.08001 * 119.94899 * 180.23233 * 15 14 13 44 44 H 0.97005 * 119.99758 * 180.02562 * 21 20 18 45 45 H 1.08007 * 119.95108 * 180.02562 * 26 16 15 46 46 H 1.08004 * 120.04926 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9874 0.4251 -1.2484 6 8 3.9568 0.4756 1.1676 7 6 4.1579 2.5823 0.0000 8 7 5.6135 2.4686 -0.1198 9 6 6.3768 3.5793 -0.1412 10 8 5.8565 4.6768 -0.0614 11 6 7.8299 3.4658 -0.2614 12 6 8.6051 4.5649 -0.1414 13 6 8.0243 5.8242 0.3448 14 6 8.3021 7.0269 -0.3160 15 6 7.7527 8.2031 0.1404 16 6 6.9300 8.1997 1.2630 17 8 6.3946 9.3616 1.7119 18 6 5.5128 9.2767 2.7276 19 1 5.3237 8.3243 3.2005 20 6 4.8482 10.4127 3.1658 21 7 3.9874 10.3299 4.1566 22 14 5.1748 12.0599 2.3476 23 1 4.2311 12.2464 1.2162 24 1 4.9832 13.1507 3.3370 25 1 6.5697 12.0922 1.8393 26 6 6.6549 7.0073 1.9258 27 6 7.1961 5.8257 1.4739 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 5.0739 0.3386 -1.2477 34 1 3.5440 -0.5706 -1.2483 35 1 3.6661 0.9659 -2.1386 36 1 3.7039 0.9006 1.9986 37 1 3.9086 3.0913 0.9309 38 1 3.7675 3.1534 -0.8423 39 1 6.0281 1.5940 -0.1838 40 1 8.2827 2.5037 -0.4503 41 1 9.6519 4.5184 -0.4030 42 1 8.9443 7.0311 -1.1843 43 1 7.9634 9.1307 -0.3710 44 1 3.5224 11.1242 4.4628 45 1 6.0157 7.0094 2.7964 46 1 6.9817 4.9008 1.9887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491925779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:13 Heat of formation + Delta-G solvation = -102.133799 kcal Electronic energy + Delta-G solvation = -28438.852124 eV Core-core repulsion = 24295.676785 eV Total energy + Delta-G solvation = -4143.175339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.06707 -39.24506 -38.67323 -37.20344 -36.53257 -34.31659 -33.08342 -32.29560 -31.87032 -30.16722 -28.55916 -27.82387 -27.10378 -25.60030 -25.03751 -22.94141 -21.81589 -20.92377 -20.79396 -19.26949 -17.90402 -17.63225 -17.42955 -16.80154 -16.51880 -16.37993 -15.48867 -15.38659 -15.13348 -14.79339 -14.35476 -14.24914 -14.09850 -13.86700 -13.70118 -13.53141 -13.30736 -12.94921 -12.86371 -12.67242 -12.50768 -12.30230 -12.24664 -12.13635 -12.04318 -11.89341 -11.40529 -10.99371 -10.94683 -10.80418 -10.66382 -10.36649 -10.14635 -10.05279 -9.55237 -9.42459 -9.23315 -8.99048 -8.75767 -8.01072 -7.00672 -6.41599 -4.05443 1.21557 2.32460 2.58809 2.97474 3.22751 3.26644 3.41105 3.59286 3.60672 3.95820 4.24345 4.41249 4.44809 4.53189 4.61703 4.89583 4.93427 4.96374 5.05300 5.08329 5.10936 5.14501 5.17440 5.32018 5.37495 5.50554 5.56822 5.60710 5.63934 5.67296 5.75834 5.93147 6.17999 6.24112 6.36557 6.46075 6.54994 6.63932 6.73883 6.92204 7.16245 7.29347 7.33832 7.41673 7.65300 7.67461 7.85171 8.06853 8.51540 8.93716 9.57913 10.65929 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.002731 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.041935 B =10249.299036 C =12239.634382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.036 3.964 4 C 0.126 3.874 5 C -0.135 4.135 6 O -0.547 6.547 7 C 0.098 3.902 8 N -0.727 5.727 9 C 0.537 3.463 10 O -0.512 6.512 11 C -0.257 4.257 12 C 0.021 3.979 13 C -0.175 4.175 14 C -0.050 4.050 15 C -0.207 4.207 16 C 0.175 3.825 17 O -0.214 6.214 18 C -0.386 4.386 19 H 0.107 0.893 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.228 4.228 27 C 0.007 3.993 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.379 0.621 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.400 0.600 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.279 0.721 45 H 0.130 0.870 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 -20.418 -9.844 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C -0.042 4.042 4 C 0.084 3.916 5 C -0.192 4.192 6 O -0.353 6.353 7 C -0.027 4.027 8 N -0.382 5.382 9 C 0.327 3.673 10 O -0.388 6.388 11 C -0.278 4.278 12 C 0.001 3.999 13 C -0.176 4.176 14 C -0.068 4.068 15 C -0.226 4.226 16 C 0.122 3.878 17 O -0.118 6.118 18 C -0.462 4.462 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.247 4.247 27 C -0.012 4.012 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.226 0.774 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.147 0.853 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.016 -19.817 -10.142 22.261 hybrid contribution -0.513 0.771 0.226 0.953 sum -0.529 -19.046 -9.916 21.479 Atomic orbital electron populations 1.22784 0.80977 1.02846 1.00126 1.87923 1.19525 1.26746 1.95402 1.23148 0.93846 0.85615 1.01545 1.21430 0.90844 0.91116 0.88192 1.21665 1.01822 1.01449 0.94313 1.86570 1.80954 1.52361 1.15391 1.21789 0.81812 0.95765 1.03286 1.45835 1.06140 1.09432 1.76803 1.18516 0.88016 0.83946 0.76820 1.91008 1.74638 1.25501 1.47680 1.22650 0.92570 0.99395 1.13145 1.22338 0.97952 0.91616 0.87966 1.18358 1.06541 0.92107 1.00547 1.20613 0.97518 0.91027 0.97650 1.19997 1.05421 0.98343 0.98830 1.19268 0.91489 0.85608 0.91460 1.83500 1.52810 1.27485 1.48028 1.20816 1.17689 0.98706 1.08987 0.87551 1.24485 0.94616 0.99131 0.95797 1.69629 1.25273 1.31012 1.25688 0.86181 0.80181 0.81463 0.79087 1.19859 1.20769 1.18304 1.21063 1.07075 0.92224 1.04387 1.20600 0.91105 0.96017 0.93454 0.89502 0.93955 0.94030 0.92486 0.92001 0.91835 0.90720 0.91069 0.77363 0.90950 0.90584 0.76488 0.85983 0.85851 0.86992 0.86654 0.91041 0.85251 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.60 9.92 -44.85 -0.44 -4.05 16 3 C 0.04 0.30 5.03 37.16 0.19 0.49 16 4 C 0.13 1.11 0.85 -90.62 -0.08 1.03 16 5 C -0.14 -1.11 8.47 37.16 0.31 -0.80 16 6 O -0.55 -5.20 12.82 -44.85 -0.57 -5.77 16 7 C 0.10 1.04 4.82 -4.04 -0.02 1.02 16 8 N -0.73 -8.07 5.18 -61.76 -0.32 -8.39 16 9 C 0.54 7.81 6.86 -13.04 -0.09 7.72 16 10 O -0.51 -9.85 12.34 5.17 0.06 -9.79 16 11 C -0.26 -3.15 9.92 -37.50 -0.37 -3.52 16 12 C 0.02 0.28 9.79 -37.20 -0.36 -0.08 16 13 C -0.17 -3.10 4.43 -105.03 -0.46 -3.57 16 14 C -0.05 -0.89 9.78 -39.15 -0.38 -1.28 16 15 C -0.21 -4.32 9.97 -39.46 -0.39 -4.71 16 16 C 0.17 4.24 6.66 -38.89 -0.26 3.99 16 17 O -0.21 -5.83 8.57 0.73 0.01 -5.82 16 18 C -0.39 -11.17 9.94 30.91 0.31 -10.86 16 19 H 0.11 3.16 5.41 -52.49 -0.28 2.87 16 20 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 21 N -0.88 -25.65 13.96 55.48 0.77 -24.88 16 22 Si 0.91 21.99 28.62 -169.99 -4.86 17.12 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.23 -5.28 9.14 -39.47 -0.36 -5.65 16 27 C 0.01 0.13 6.69 -39.14 -0.26 -0.13 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.49 6.57 -51.93 -0.34 0.14 16 34 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.38 2.67 9.05 45.56 0.41 3.09 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.40 3.59 6.97 -40.82 -0.28 3.31 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 44 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.13 3.15 5.62 -52.48 -0.29 2.85 16 46 H 0.10 1.84 7.27 -52.48 -0.38 1.46 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -34.33 385.83 -6.55 -40.88 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.78 Total: 8.21 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.22 Total: -13.33 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.45 Total: -33.27 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.95 Total: -25.43 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.86 Total: 17.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.33 -6.55 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491925779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.255 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds