Wall clock time and date at job start Tue Mar 31 2020 18:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00286 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46737 * 60.00316 * 4 3 2 6 6 O 1.42893 * 109.47567 * 300.00270 * 4 3 2 7 7 C 1.53006 * 109.47319 * 179.97438 * 4 3 2 8 8 N 1.46491 * 109.47184 * 185.00265 * 7 4 3 9 9 C 1.34783 * 120.00149 * 180.02562 * 8 7 4 10 10 O 1.21720 * 119.99754 * 359.97438 * 9 8 7 11 11 C 1.46254 * 120.00211 * 180.02562 * 9 8 7 12 12 C 1.35024 * 119.99741 * 186.98126 * 11 9 8 13 13 C 1.46955 * 120.00243 * 10.95710 * 12 11 9 14 14 C 1.40017 * 120.10355 * 226.00587 * 13 12 11 15 15 C 1.37602 * 119.89826 * 179.79356 * 14 13 12 16 16 C 1.39177 * 120.10029 * 0.48531 * 15 14 13 17 17 O 1.35574 * 119.89819 * 179.77071 * 16 15 14 18 18 C 1.34779 * 116.99846 * 174.20145 * 17 16 15 19 19 H 1.07997 * 120.00295 * 5.06535 * 18 17 16 20 20 C 1.38715 * 119.99787 * 185.06328 * 18 17 16 21 21 N 1.31511 * 119.99903 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00074 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47300 * 89.99772 * 22 20 18 24 24 H 1.48507 * 109.47126 * 209.99836 * 22 20 18 25 25 H 1.48501 * 109.47126 * 329.99314 * 22 20 18 26 26 C 1.39170 * 120.20246 * 359.74075 * 16 15 14 27 27 C 1.37600 * 120.10304 * 0.02840 * 26 16 15 28 28 H 1.08993 * 109.47038 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46643 * 300.00386 * 1 2 3 30 30 H 1.08994 * 109.46937 * 59.99477 * 1 2 3 31 31 H 1.09004 * 109.46945 * 60.00172 * 3 2 1 32 32 H 1.09001 * 109.47157 * 299.99879 * 3 2 1 33 33 H 1.08999 * 109.47031 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.46983 * 299.99633 * 5 4 3 35 35 H 1.09001 * 109.47368 * 59.99947 * 5 4 3 36 36 H 0.96706 * 113.99648 * 299.99690 * 6 4 3 37 37 H 1.08994 * 109.46599 * 64.99897 * 7 4 3 38 38 H 1.08998 * 109.46804 * 305.00460 * 7 4 3 39 39 H 0.96999 * 120.00504 * 0.02562 * 8 7 4 40 40 H 1.07997 * 120.00125 * 7.24622 * 11 9 8 41 41 H 1.07999 * 119.99294 * 190.96368 * 12 11 9 42 42 H 1.07999 * 120.04955 * 359.97438 * 14 13 12 43 43 H 1.08001 * 119.94899 * 180.23233 * 15 14 13 44 44 H 0.97005 * 119.99758 * 180.02562 * 21 20 18 45 45 H 1.08007 * 119.95108 * 180.02562 * 26 16 15 46 46 H 1.08004 * 120.04926 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9874 0.4251 -1.2484 6 8 3.9568 0.4756 1.1676 7 6 4.1579 2.5823 0.0000 8 7 5.6135 2.4686 -0.1198 9 6 6.3768 3.5793 -0.1412 10 8 5.8565 4.6768 -0.0614 11 6 7.8299 3.4658 -0.2614 12 6 8.6051 4.5649 -0.1414 13 6 8.0243 5.8242 0.3448 14 6 8.3021 7.0269 -0.3160 15 6 7.7527 8.2031 0.1404 16 6 6.9300 8.1997 1.2630 17 8 6.3946 9.3616 1.7119 18 6 5.5128 9.2767 2.7276 19 1 5.3237 8.3243 3.2005 20 6 4.8482 10.4127 3.1658 21 7 3.9874 10.3299 4.1566 22 14 5.1748 12.0599 2.3476 23 1 4.2311 12.2464 1.2162 24 1 4.9832 13.1507 3.3370 25 1 6.5697 12.0922 1.8393 26 6 6.6549 7.0073 1.9258 27 6 7.1961 5.8257 1.4739 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 5.0739 0.3386 -1.2477 34 1 3.5440 -0.5706 -1.2483 35 1 3.6661 0.9659 -2.1386 36 1 3.7039 0.9006 1.9986 37 1 3.9086 3.0913 0.9309 38 1 3.7675 3.1534 -0.8423 39 1 6.0281 1.5940 -0.1838 40 1 8.2827 2.5037 -0.4503 41 1 9.6519 4.5184 -0.4030 42 1 8.9443 7.0311 -1.1843 43 1 7.9634 9.1307 -0.3710 44 1 3.5224 11.1242 4.4628 45 1 6.0157 7.0094 2.7964 46 1 6.9817 4.9008 1.9887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491925779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:12 Heat of formation + Delta-G solvation = -128.543113 kcal Electronic energy + Delta-G solvation = -28439.997318 eV Core-core repulsion = 24295.676785 eV Total energy + Delta-G solvation = -4144.320533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22943 -40.66093 -39.80772 -38.34312 -37.75795 -35.34156 -34.64621 -34.08494 -32.71087 -31.80809 -30.00510 -28.45174 -28.05447 -27.17904 -26.16092 -24.25288 -23.43181 -22.30337 -21.60761 -20.40589 -19.85389 -19.21295 -18.40376 -18.09118 -17.21914 -17.08649 -16.71348 -16.60402 -16.23390 -15.97229 -15.83076 -15.70286 -15.53228 -15.29436 -15.01209 -14.70357 -14.43332 -14.29386 -14.16196 -13.97027 -13.90649 -13.63804 -13.31356 -13.09858 -13.02954 -12.77035 -12.65637 -12.48465 -12.46955 -12.31445 -11.95019 -11.71411 -11.34103 -11.17048 -11.00777 -10.70897 -10.68646 -10.45727 -10.06189 -9.60755 -8.63585 -8.52636 -6.23834 -0.00258 0.68826 1.07386 1.28620 1.34848 1.50329 2.13360 2.26448 2.46554 2.79098 2.81980 3.06738 3.22089 3.26028 3.65406 3.73843 3.83407 3.98774 4.04885 4.11064 4.19630 4.27073 4.34065 4.50248 4.52159 4.54143 4.58651 4.64392 4.71070 4.73971 4.82820 4.87858 4.94093 4.98782 5.18261 5.25067 5.26890 5.32773 5.47227 5.50970 5.64802 5.77149 5.84420 5.90582 6.11136 6.27358 6.64817 6.71099 6.81324 7.42216 7.56657 8.59364 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.002731 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.041935 B =10249.299036 C =12239.634382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.034 3.966 4 C 0.135 3.865 5 C -0.134 4.134 6 O -0.557 6.557 7 C 0.100 3.900 8 N -0.709 5.709 9 C 0.525 3.475 10 O -0.568 6.568 11 C -0.228 4.228 12 C 0.004 3.996 13 C -0.147 4.147 14 C -0.049 4.049 15 C -0.206 4.206 16 C 0.129 3.871 17 O -0.242 6.242 18 C -0.401 4.401 19 H 0.075 0.925 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.974 3.026 23 H -0.266 1.266 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.247 4.247 27 C 0.000 4.000 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.387 0.613 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.414 0.586 40 H 0.173 0.827 41 H 0.175 0.825 42 H 0.162 0.838 43 H 0.130 0.870 44 H 0.285 0.715 45 H 0.097 0.903 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -22.760 -12.791 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.043 4.043 4 C 0.093 3.907 5 C -0.191 4.191 6 O -0.365 6.365 7 C -0.025 4.025 8 N -0.363 5.363 9 C 0.315 3.685 10 O -0.449 6.449 11 C -0.249 4.249 12 C -0.016 4.016 13 C -0.148 4.148 14 C -0.067 4.067 15 C -0.226 4.226 16 C 0.080 3.920 17 O -0.150 6.150 18 C -0.477 4.477 19 H 0.093 0.907 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.188 1.188 25 H -0.186 1.186 26 C -0.267 4.267 27 C -0.018 4.018 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.236 0.764 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.252 0.748 40 H 0.190 0.810 41 H 0.192 0.808 42 H 0.180 0.820 43 H 0.147 0.853 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.403 -22.254 -13.104 25.937 hybrid contribution -1.176 0.992 0.977 1.823 sum 1.227 -21.262 -12.127 24.508 Atomic orbital electron populations 1.22945 0.79712 1.03870 1.00715 1.87883 1.20985 1.27130 1.95539 1.23163 0.93600 0.85552 1.02032 1.21331 0.91036 0.89850 0.88449 1.21678 1.02309 1.01017 0.94109 1.86542 1.81126 1.52739 1.16053 1.21775 0.81684 0.96870 1.02189 1.45713 1.06264 1.09446 1.74829 1.19159 0.89498 0.83713 0.76116 1.91014 1.75817 1.27665 1.50355 1.23085 0.90808 1.01176 1.09808 1.22622 1.00414 0.89222 0.89311 1.18932 1.03086 0.94621 0.98113 1.21177 0.97193 0.89729 0.98584 1.20383 1.04261 1.00463 0.97449 1.19808 0.93420 0.85311 0.93497 1.83442 1.54167 1.28836 1.48526 1.20700 1.18995 0.97989 1.09995 0.90748 1.25330 0.94366 1.02711 0.96472 1.69716 1.26911 1.32317 1.27477 0.85185 0.79717 0.77125 0.78450 1.19123 1.18801 1.18579 1.21012 1.07867 0.93774 1.04028 1.20728 0.91592 0.94838 0.94653 0.88332 0.93633 0.93183 0.92357 0.91274 0.90976 0.91335 0.90282 0.76354 0.92569 0.91237 0.74769 0.80991 0.80830 0.82044 0.85251 0.90487 0.88474 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.54 16 2 O -0.40 -7.15 9.92 -139.78 -1.39 -8.54 16 3 C 0.03 0.55 5.03 71.98 0.36 0.91 16 4 C 0.13 2.20 0.85 -10.79 -0.01 2.19 16 5 C -0.13 -1.92 8.47 71.98 0.61 -1.31 16 6 O -0.56 -9.82 12.82 -139.78 -1.79 -11.61 16 7 C 0.10 2.04 4.82 86.38 0.42 2.45 16 8 N -0.71 -13.97 5.18 -467.51 -2.42 -16.39 16 9 C 0.52 13.85 6.86 86.33 0.59 14.44 16 10 O -0.57 -21.49 12.34 -4.41 -0.05 -21.54 16 11 C -0.23 -4.36 9.92 23.61 0.23 -4.13 16 12 C 0.00 0.07 9.79 23.82 0.23 0.31 16 13 C -0.15 -4.81 4.43 -20.13 -0.09 -4.90 16 14 C -0.05 -1.61 9.78 22.55 0.22 -1.39 16 15 C -0.21 -8.53 9.97 22.35 0.22 -8.31 16 16 C 0.13 6.58 6.66 22.72 0.15 6.74 16 17 O -0.24 -14.04 8.57 -20.29 -0.17 -14.22 16 18 C -0.40 -25.02 9.94 67.93 0.68 -24.35 16 19 H 0.07 4.94 5.41 -2.91 -0.02 4.92 16 20 C 0.01 0.57 5.49 84.86 0.47 1.04 16 21 N -0.92 -57.06 13.96 21.62 0.30 -56.76 16 22 Si 0.97 47.08 28.62 68.60 1.96 49.04 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 26 C -0.25 -12.26 9.14 22.34 0.20 -12.06 16 27 C 0.00 0.01 6.69 22.55 0.15 0.16 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 0.88 6.57 -2.39 -0.02 0.86 16 34 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.39 5.19 9.05 -74.05 -0.67 4.52 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.41 5.88 6.97 -92.71 -0.65 5.24 16 40 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 43 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 44 H 0.29 16.07 8.31 -92.70 -0.77 15.30 16 45 H 0.10 5.33 5.62 -2.91 -0.02 5.31 16 46 H 0.11 4.01 7.27 -2.91 -0.02 3.99 16 Total: -1.00 -81.90 385.83 1.82 -80.08 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.30 Total: 26.58 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 5.69 Total: -26.64 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -2.12 Total: -73.15 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -3.41 Total: -55.91 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.96 Total: 49.04 kcal Total: -81.90 1.82 -80.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491925779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.462 kcal (2) G-P(sol) polarization free energy of solvation -81.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds