Wall clock time and date at job start Tue Mar 31 2020 18:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00341 * 2 1 4 4 C 1.52997 * 109.47423 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47272 * 305.00015 * 4 3 2 6 6 O 1.42899 * 109.47028 * 64.99871 * 4 3 2 7 7 C 1.53007 * 109.47039 * 184.99878 * 4 3 2 8 8 N 1.46500 * 109.46992 * 180.02562 * 7 4 3 9 9 C 1.34770 * 120.00149 * 179.97438 * 8 7 4 10 10 O 1.21722 * 119.99697 * 0.02562 * 9 8 7 11 11 C 1.46250 * 120.00046 * 179.97438 * 9 8 7 12 12 C 1.35031 * 119.99722 * 180.02562 * 11 9 8 13 13 C 1.46959 * 119.99896 * 180.27394 * 12 11 9 14 14 C 1.40027 * 120.10017 * 359.45143 * 13 12 11 15 15 C 1.37601 * 119.89863 * 179.78912 * 14 13 12 16 16 C 1.39178 * 120.09610 * 0.48118 * 15 14 13 17 17 O 1.35575 * 119.89259 * 179.76441 * 16 15 14 18 18 C 1.34788 * 116.99533 * 174.42515 * 17 16 15 19 19 H 1.08001 * 120.00124 * 5.05799 * 18 17 16 20 20 C 1.38720 * 119.99795 * 185.06035 * 18 17 16 21 21 N 1.31507 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47157 * 89.99783 * 22 20 18 24 24 H 1.48507 * 109.47385 * 209.99705 * 22 20 18 25 25 H 1.48501 * 109.47369 * 329.99939 * 22 20 18 26 26 C 1.39170 * 120.20621 * 359.74800 * 16 15 14 27 27 C 1.37600 * 120.10262 * 0.02562 * 26 16 15 28 28 H 1.08993 * 109.47338 * 59.99807 * 1 2 3 29 29 H 1.08998 * 109.46900 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46990 * 299.99710 * 1 2 3 31 31 H 1.08997 * 109.47062 * 59.99889 * 3 2 1 32 32 H 1.09008 * 109.46792 * 300.00783 * 3 2 1 33 33 H 1.08999 * 109.46924 * 299.99991 * 5 4 3 34 34 H 1.09002 * 109.46644 * 59.99494 * 5 4 3 35 35 H 1.08994 * 109.46793 * 179.97438 * 5 4 3 36 36 H 0.96708 * 113.99912 * 60.00497 * 6 4 3 37 37 H 1.08993 * 109.46896 * 60.00372 * 7 4 3 38 38 H 1.08995 * 109.46915 * 300.00307 * 7 4 3 39 39 H 0.96999 * 119.99522 * 359.97438 * 8 7 4 40 40 H 1.07990 * 120.00180 * 359.97438 * 11 9 8 41 41 H 1.08000 * 120.00105 * 359.97438 * 12 11 9 42 42 H 1.08005 * 120.04947 * 359.97438 * 14 13 12 43 43 H 1.07995 * 119.95289 * 180.22906 * 15 14 13 44 44 H 0.97004 * 119.99419 * 180.02562 * 21 20 18 45 45 H 1.07998 * 119.95118 * 179.97438 * 26 16 15 46 46 H 1.07997 * 120.05056 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9791 0.3193 1.1807 6 8 3.9648 0.5796 -1.2220 7 6 4.1574 2.5769 0.1251 8 7 5.6179 2.4613 0.1238 9 6 6.3815 3.5671 0.2248 10 8 5.8577 4.6620 0.3175 11 6 7.8394 3.4516 0.2241 12 6 8.6045 4.5596 0.3258 13 6 10.0695 4.4441 0.3190 14 6 10.6743 3.1851 0.2189 15 6 12.0464 3.0822 0.2086 16 6 12.8329 4.2261 0.3076 17 8 14.1844 4.1195 0.3019 18 6 14.8887 5.2685 0.2841 19 1 14.3770 6.2168 0.3576 20 6 16.2709 5.2331 0.1713 21 7 16.8939 4.0784 0.0823 22 14 17.2470 6.8255 0.1460 23 1 17.6182 7.2008 1.5340 24 1 18.4786 6.6384 -0.6624 25 1 16.4202 7.9034 -0.4539 26 6 12.2363 5.4791 0.4122 27 6 10.8649 5.5922 0.4186 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8463 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.6516 0.7808 2.1122 34 1 3.5359 -0.6725 1.0911 35 1 5.0656 0.2329 1.1799 36 1 3.7176 1.0753 -2.0147 37 1 3.8300 3.0383 1.0566 38 1 3.8414 3.1933 -0.7165 39 1 6.0352 1.5887 0.0503 40 1 8.3041 2.4802 0.1431 41 1 8.1398 5.5311 0.4072 42 1 10.0646 2.2965 0.1467 43 1 12.5137 2.1119 0.1276 44 1 17.8605 4.0537 0.0039 45 1 12.8505 6.3640 0.4893 46 1 10.4029 6.5649 0.4994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491925881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:21 Heat of formation + Delta-G solvation = -121.636954 kcal Electronic energy + Delta-G solvation = -26979.890765 eV Core-core repulsion = 22835.869705 eV Total energy + Delta-G solvation = -4144.021059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.08636 -39.23353 -38.88606 -37.27719 -36.85312 -34.45224 -33.20756 -32.33374 -31.99021 -30.42676 -28.55373 -27.92019 -27.13084 -25.80669 -25.35433 -23.00168 -22.13465 -20.98149 -20.74574 -19.38698 -18.24265 -17.71481 -17.16735 -17.05793 -16.68322 -16.50673 -15.56592 -15.51174 -15.31947 -14.76914 -14.73472 -14.42553 -14.39225 -13.96861 -13.82453 -13.70634 -13.34950 -13.06244 -13.02611 -12.73407 -12.58325 -12.48081 -12.15898 -12.03179 -11.93134 -11.75917 -11.71657 -11.12841 -11.11651 -11.07532 -10.68138 -10.54504 -10.51423 -10.19677 -9.82815 -9.61237 -9.49301 -9.18670 -8.84965 -8.37850 -7.11278 -6.65011 -4.19888 1.06795 2.13991 2.55423 2.84238 3.03909 3.04950 3.09778 3.47351 3.56581 3.82402 3.82739 4.28674 4.32470 4.38320 4.51334 4.77924 4.81091 4.92038 4.92638 4.93222 5.00289 5.05101 5.19786 5.25763 5.28292 5.36853 5.49662 5.53526 5.54008 5.64643 5.67449 5.88966 6.01707 6.12177 6.28553 6.46516 6.48481 6.60263 6.61973 6.79455 6.92134 7.13310 7.21173 7.23974 7.28360 7.53299 7.64273 7.80312 8.31421 8.79772 9.46732 10.51595 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.038980 B = 0.001524 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.152786 B =18362.282016 C =18871.594861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.038 3.962 4 C 0.124 3.876 5 C -0.136 4.136 6 O -0.545 6.545 7 C 0.099 3.901 8 N -0.725 5.725 9 C 0.556 3.444 10 O -0.562 6.562 11 C -0.283 4.283 12 C 0.039 3.961 13 C -0.199 4.199 14 C -0.043 4.043 15 C -0.199 4.199 16 C 0.167 3.833 17 O -0.162 6.162 18 C -0.394 4.394 19 H 0.097 0.903 20 C 0.042 3.958 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.265 1.265 26 C -0.242 4.242 27 C -0.035 4.035 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.377 0.623 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.405 0.595 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.274 0.726 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.726 -5.228 -0.114 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C -0.040 4.040 4 C 0.083 3.917 5 C -0.194 4.194 6 O -0.351 6.351 7 C -0.026 4.026 8 N -0.378 5.378 9 C 0.349 3.651 10 O -0.443 6.443 11 C -0.304 4.304 12 C 0.019 3.981 13 C -0.201 4.201 14 C -0.061 4.061 15 C -0.218 4.218 16 C 0.110 3.890 17 O -0.063 6.063 18 C -0.469 4.469 19 H 0.115 0.885 20 C -0.164 4.164 21 N -0.484 5.484 22 Si 0.769 3.231 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.189 1.189 26 C -0.261 4.261 27 C -0.053 4.053 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.225 0.775 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.241 0.759 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.312 -5.369 0.341 26.857 hybrid contribution 0.139 1.074 -0.438 1.168 sum -26.174 -4.295 -0.097 26.524 Atomic orbital electron populations 1.22785 0.80953 1.02981 0.99991 1.87945 1.19546 1.26677 1.95363 1.23131 0.93878 0.85682 1.01272 1.21455 0.90760 0.92197 0.87310 1.21666 1.02135 1.00760 0.94798 1.86617 1.80884 1.52644 1.14931 1.21790 0.81818 0.95946 1.03089 1.45689 1.05589 1.10177 1.76340 1.18426 0.87968 0.83441 0.75304 1.90772 1.75433 1.26786 1.51279 1.22408 0.91363 1.00105 1.16508 1.22282 0.92035 0.98084 0.85661 1.18462 0.91446 0.93771 1.16372 1.20894 0.93473 0.96121 0.95600 1.20155 0.92661 0.97165 1.11858 1.19618 0.84769 0.93297 0.91281 1.83907 1.12119 1.34119 1.76190 1.21480 0.89015 0.84165 1.52243 0.88537 1.25391 0.95845 0.99242 0.95953 1.70016 1.09948 1.24780 1.43686 0.85649 0.79007 0.79631 0.78851 1.19637 1.20038 1.18948 1.21095 0.94811 0.97964 1.12274 1.20985 0.93065 0.96865 0.94404 0.94051 0.89409 0.94024 0.92042 0.92689 0.91059 0.90551 0.91629 0.77526 0.90577 0.91283 0.75882 0.85827 0.85964 0.86368 0.86109 0.91599 0.85126 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.00 9.79 -40.08 -0.39 -3.40 16 3 C 0.04 0.24 5.06 37.16 0.19 0.43 16 4 C 0.12 0.90 0.84 -90.62 -0.08 0.83 16 5 C -0.14 -1.03 8.47 37.16 0.31 -0.72 16 6 O -0.55 -4.42 12.69 -40.08 -0.51 -4.93 16 7 C 0.10 0.84 4.78 -4.04 -0.02 0.82 16 8 N -0.72 -7.43 5.14 -61.76 -0.32 -7.75 16 9 C 0.56 7.69 7.74 -13.04 -0.10 7.59 16 10 O -0.56 -9.61 16.23 5.17 0.08 -9.53 16 11 C -0.28 -3.86 9.41 -37.50 -0.35 -4.22 16 12 C 0.04 0.60 9.45 -37.19 -0.35 0.24 16 13 C -0.20 -3.40 5.87 -105.03 -0.62 -4.02 16 14 C -0.04 -0.73 9.40 -39.14 -0.37 -1.10 16 15 C -0.20 -3.99 9.97 -39.47 -0.39 -4.38 16 16 C 0.17 3.84 6.66 -38.89 -0.26 3.58 16 17 O -0.16 -4.42 9.74 0.70 0.01 -4.41 16 18 C -0.39 -10.46 9.48 30.91 0.29 -10.17 16 19 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.85 -23.82 13.67 55.48 0.76 -23.06 16 22 Si 0.94 19.50 29.55 -169.99 -5.02 14.48 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 C -0.24 -5.01 9.14 -39.47 -0.36 -5.37 16 27 C -0.03 -0.62 9.78 -39.15 -0.38 -1.00 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.65 7.56 -51.93 -0.39 0.25 16 35 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 36 H 0.38 1.94 9.05 45.56 0.41 2.35 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.41 3.60 7.17 -40.82 -0.29 3.31 16 40 H 0.12 1.47 6.06 -52.49 -0.32 1.15 16 41 H 0.12 1.84 7.52 -52.49 -0.39 1.45 16 42 H 0.12 1.66 6.16 -52.48 -0.32 1.33 16 43 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.13 2.67 5.62 -52.49 -0.29 2.38 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -32.53 391.45 -6.56 -39.09 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.59 Total: 8.84 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -1.47 Total: -15.23 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.44 Total: -30.82 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.81 Total: -22.26 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.53 -6.56 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491925881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.548 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds