Wall clock time and date at job start Tue Mar 31 2020 18:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47016 * 2 1 4 4 O 1.42892 * 109.47244 * 299.99878 * 3 2 1 5 5 C 1.52995 * 109.47008 * 239.99683 * 2 1 3 6 6 O 1.42903 * 109.46825 * 180.02562 * 5 2 1 7 7 C 1.53008 * 109.46764 * 119.99528 * 2 1 3 8 8 N 1.46498 * 109.46632 * 60.00272 * 7 2 1 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 2 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47040 * 60.00415 * 22 20 18 24 24 H 1.48501 * 109.47112 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47374 * 300.00308 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.47029 * 300.00325 * 1 2 3 29 29 H 1.09003 * 109.46835 * 59.99870 * 1 2 3 30 30 H 1.08995 * 109.47039 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47487 * 59.99956 * 3 2 1 32 32 H 1.08998 * 109.47057 * 179.97438 * 3 2 1 33 33 H 0.96698 * 114.00720 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47262 * 299.99915 * 5 2 1 35 35 H 1.09003 * 109.46958 * 60.00522 * 5 2 1 36 36 H 0.96705 * 113.99850 * 180.02562 * 6 5 2 37 37 H 1.08992 * 109.47442 * 300.00284 * 7 2 1 38 38 H 1.09003 * 109.46758 * 179.97438 * 7 2 1 39 39 H 0.96995 * 120.00513 * 359.97438 * 8 7 2 40 40 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 41 41 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 42 42 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 43 43 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 44 44 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 45 45 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 46 46 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5637 2.1161 -1.1667 5 6 2.0400 -0.7213 -1.2492 6 8 3.4690 -0.7218 -1.2488 7 6 2.0400 -0.7212 1.2494 8 7 1.5516 -2.1024 1.2493 9 6 1.8776 -2.9324 2.2600 10 8 2.5780 -2.5346 3.1725 11 6 1.3950 -4.3130 2.2570 12 6 1.8351 -5.1841 3.1901 13 6 2.9734 -4.8281 4.0488 14 6 4.1045 -4.2145 3.4968 15 6 5.1660 -3.8786 4.3053 16 6 5.1209 -4.1575 5.6682 17 8 6.1710 -3.8292 6.4603 18 6 6.0196 -4.0174 7.7863 19 1 5.1254 -4.4890 8.1661 20 6 7.0125 -3.6055 8.6631 21 7 8.1012 -3.0309 8.2006 22 14 6.8030 -3.8671 10.5008 23 1 6.6566 -5.3181 10.7807 24 1 7.9949 -3.3426 11.2145 25 1 5.5906 -3.1480 10.9682 26 6 4.0009 -4.7721 6.2203 27 6 2.9324 -5.1064 5.4204 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.8493 3.0376 -1.2331 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2074 -2.1392 36 1 3.8624 -1.1632 -2.0141 37 1 1.6766 -0.2074 2.1393 38 1 3.1300 -0.7216 1.2492 39 1 0.9937 -2.4196 0.5220 40 1 0.6866 -4.6359 1.5083 41 1 1.3506 -6.1424 3.3055 42 1 4.1420 -4.0013 2.4386 43 1 6.0373 -3.4019 3.8812 44 1 8.7953 -2.7425 8.8138 45 1 3.9705 -4.9870 7.2783 46 1 2.0635 -5.5830 5.8499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492971185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:24 Heat of formation + Delta-G solvation = -111.006724 kcal Electronic energy + Delta-G solvation = -28600.014449 eV Core-core repulsion = 24456.454351 eV Total energy + Delta-G solvation = -4143.560098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.03099 -39.05678 -38.42170 -36.54047 -36.37515 -35.21517 -33.00980 -32.72518 -32.06290 -30.07574 -28.24186 -27.21948 -26.24696 -25.90478 -25.25534 -22.75841 -21.73258 -20.88008 -19.68714 -18.96967 -17.93170 -17.81604 -17.52046 -17.10468 -16.62334 -15.87972 -15.45704 -15.27084 -14.92408 -14.55337 -14.52004 -14.26787 -13.81784 -13.79867 -13.64733 -13.40908 -13.07093 -13.03110 -12.78288 -12.74766 -12.54168 -12.39422 -12.13791 -11.66679 -11.56141 -11.42361 -11.29333 -10.95552 -10.72838 -10.65420 -10.60909 -10.38820 -10.32020 -10.13597 -9.46071 -9.37451 -9.12491 -8.88019 -8.65922 -7.87564 -6.82313 -6.42607 -3.98381 1.28770 2.46681 2.74678 3.15392 3.18345 3.19573 3.25026 3.70002 3.87954 3.99827 4.15938 4.36491 4.41848 4.73580 4.80613 5.00311 5.11385 5.12966 5.17051 5.25819 5.27063 5.29356 5.39836 5.44966 5.53043 5.63251 5.66970 5.76443 5.77392 5.84378 5.89412 6.04402 6.29021 6.37148 6.47074 6.57161 6.64249 6.83397 7.07802 7.15715 7.29439 7.38524 7.40583 7.49273 7.54297 7.71404 7.96496 8.04135 8.60618 9.02946 9.75435 10.75289 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.002439 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.129815 B =11475.010690 C =12449.181809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C 0.090 3.910 4 O -0.572 6.572 5 C 0.091 3.909 6 O -0.567 6.567 7 C 0.135 3.865 8 N -0.732 5.732 9 C 0.539 3.461 10 O -0.510 6.510 11 C -0.267 4.267 12 C 0.027 3.973 13 C -0.190 4.190 14 C 0.014 3.986 15 C -0.202 4.202 16 C 0.171 3.829 17 O -0.173 6.173 18 C -0.390 4.390 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.251 4.251 27 C -0.042 4.042 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.380 0.620 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.379 0.621 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.392 0.608 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.271 0.729 45 H 0.125 0.875 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.786 3.734 -19.249 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 C 0.012 3.988 4 O -0.378 6.378 5 C 0.013 3.987 6 O -0.372 6.372 7 C 0.011 3.989 8 N -0.386 5.386 9 C 0.328 3.672 10 O -0.386 6.386 11 C -0.288 4.288 12 C 0.008 3.992 13 C -0.190 4.190 14 C -0.005 4.005 15 C -0.222 4.222 16 C 0.117 3.883 17 O -0.075 6.075 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.227 0.773 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.226 0.774 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.226 0.774 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.081 0.919 45 H 0.143 0.857 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.167 3.979 -18.052 23.911 hybrid contribution -0.250 0.030 0.098 0.270 sum -15.416 4.009 -17.954 24.002 Atomic orbital electron populations 1.21765 0.92833 1.01969 1.03043 1.20837 0.96541 0.94597 0.95019 1.21989 0.98356 0.91168 0.87264 1.86376 1.77566 1.29155 1.44661 1.22075 0.81413 0.98102 0.97155 1.86478 1.19359 1.81644 1.49699 1.21099 1.00166 0.81867 0.95751 1.45926 1.55003 1.12057 1.25623 1.18463 0.80341 0.86520 0.81849 1.91000 1.35850 1.77047 1.34726 1.22584 1.08036 0.93492 1.04718 1.22326 0.90713 0.96253 0.89946 1.18289 0.95552 1.11622 0.93586 1.20445 0.91226 0.91286 0.97544 1.20008 1.00920 1.09800 0.91439 1.19529 0.86933 0.90966 0.90916 1.83907 1.32870 1.72220 1.18527 1.21346 1.06088 1.40611 0.78582 0.88963 1.25318 0.94842 0.96051 1.00340 1.70013 1.06990 1.36656 1.35845 0.85773 0.78208 0.78996 0.80414 1.19459 1.20271 1.19466 1.20942 0.95719 1.09736 1.00640 1.20736 0.96496 0.96429 0.92364 0.91787 0.91375 0.92513 0.93369 0.92229 0.77288 0.93984 0.92726 0.77417 0.91614 0.90387 0.77382 0.86311 0.86129 0.88074 0.86854 0.91928 0.85687 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.16 37.16 0.30 -0.75 16 2 C -0.07 -0.62 0.44 -154.50 -0.07 -0.69 16 3 C 0.09 0.79 5.77 37.16 0.21 1.00 16 4 O -0.57 -4.51 12.31 -35.23 -0.43 -4.95 16 5 C 0.09 0.75 5.60 37.16 0.21 0.95 16 6 O -0.57 -5.34 12.31 -35.23 -0.43 -5.78 16 7 C 0.14 1.58 4.42 -4.04 -0.02 1.57 16 8 N -0.73 -8.36 4.95 -61.75 -0.31 -8.66 16 9 C 0.54 8.15 6.77 -13.04 -0.09 8.06 16 10 O -0.51 -10.23 12.17 5.18 0.06 -10.17 16 11 C -0.27 -3.43 9.90 -37.50 -0.37 -3.80 16 12 C 0.03 0.39 9.80 -37.19 -0.36 0.03 16 13 C -0.19 -3.58 4.54 -105.03 -0.48 -4.06 16 14 C 0.01 0.28 6.59 -39.15 -0.26 0.02 16 15 C -0.20 -4.77 9.97 -39.47 -0.39 -5.16 16 16 C 0.17 4.44 6.66 -38.88 -0.26 4.19 16 17 O -0.17 -5.16 9.74 0.74 0.01 -5.15 16 18 C -0.39 -11.27 9.48 30.91 0.29 -10.98 16 19 H 0.09 2.46 5.18 -52.49 -0.27 2.19 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 22 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.25 -5.84 9.14 -39.47 -0.36 -6.20 16 27 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 30 H 0.06 0.38 6.86 -51.93 -0.36 0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 33 H 0.38 1.50 9.12 45.56 0.42 1.91 16 34 H 0.04 0.30 6.86 -51.93 -0.36 -0.06 16 35 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 36 H 0.38 2.06 9.12 45.56 0.42 2.48 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.11 7.68 -51.93 -0.40 0.71 16 39 H 0.39 3.32 6.14 -40.82 -0.25 3.07 16 40 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.10 1.92 7.02 -52.48 -0.37 1.55 16 43 H 0.11 2.62 8.06 -52.49 -0.42 2.19 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.13 2.87 5.62 -52.49 -0.29 2.57 16 46 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -36.61 380.18 -6.52 -43.12 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.76 Total: 10.99 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.12 Total: -16.03 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.45 Total: -33.72 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.80 Total: -26.05 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.61 -6.52 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492971185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.883 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds