Wall clock time and date at job start Tue Mar 31 2020 18:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47016 * 2 1 4 4 O 1.42892 * 109.47244 * 299.99878 * 3 2 1 5 5 C 1.52995 * 109.47008 * 239.99683 * 2 1 3 6 6 O 1.42903 * 109.46825 * 180.02562 * 5 2 1 7 7 C 1.53008 * 109.46764 * 119.99528 * 2 1 3 8 8 N 1.46498 * 109.46632 * 60.00272 * 7 2 1 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 2 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47040 * 60.00415 * 22 20 18 24 24 H 1.48501 * 109.47112 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47374 * 300.00308 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.47029 * 300.00325 * 1 2 3 29 29 H 1.09003 * 109.46835 * 59.99870 * 1 2 3 30 30 H 1.08995 * 109.47039 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47487 * 59.99956 * 3 2 1 32 32 H 1.08998 * 109.47057 * 179.97438 * 3 2 1 33 33 H 0.96698 * 114.00720 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47262 * 299.99915 * 5 2 1 35 35 H 1.09003 * 109.46958 * 60.00522 * 5 2 1 36 36 H 0.96705 * 113.99850 * 180.02562 * 6 5 2 37 37 H 1.08992 * 109.47442 * 300.00284 * 7 2 1 38 38 H 1.09003 * 109.46758 * 179.97438 * 7 2 1 39 39 H 0.96995 * 120.00513 * 359.97438 * 8 7 2 40 40 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 41 41 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 42 42 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 43 43 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 44 44 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 45 45 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 46 46 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5637 2.1161 -1.1667 5 6 2.0400 -0.7213 -1.2492 6 8 3.4690 -0.7218 -1.2488 7 6 2.0400 -0.7212 1.2494 8 7 1.5516 -2.1024 1.2493 9 6 1.8776 -2.9324 2.2600 10 8 2.5780 -2.5346 3.1725 11 6 1.3950 -4.3130 2.2570 12 6 1.8351 -5.1841 3.1901 13 6 2.9734 -4.8281 4.0488 14 6 4.1045 -4.2145 3.4968 15 6 5.1660 -3.8786 4.3053 16 6 5.1209 -4.1575 5.6682 17 8 6.1710 -3.8292 6.4603 18 6 6.0196 -4.0174 7.7863 19 1 5.1254 -4.4890 8.1661 20 6 7.0125 -3.6055 8.6631 21 7 8.1012 -3.0309 8.2006 22 14 6.8030 -3.8671 10.5008 23 1 6.6566 -5.3181 10.7807 24 1 7.9949 -3.3426 11.2145 25 1 5.5906 -3.1480 10.9682 26 6 4.0009 -4.7721 6.2203 27 6 2.9324 -5.1064 5.4204 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.8493 3.0376 -1.2331 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2074 -2.1392 36 1 3.8624 -1.1632 -2.0141 37 1 1.6766 -0.2074 2.1393 38 1 3.1300 -0.7216 1.2492 39 1 0.9937 -2.4196 0.5220 40 1 0.6866 -4.6359 1.5083 41 1 1.3506 -6.1424 3.3055 42 1 4.1420 -4.0013 2.4386 43 1 6.0373 -3.4019 3.8812 44 1 8.7953 -2.7425 8.8138 45 1 3.9705 -4.9870 7.2783 46 1 2.0635 -5.5830 5.8499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492971185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:23 Heat of formation + Delta-G solvation = -142.077847 kcal Electronic energy + Delta-G solvation = -28601.361794 eV Core-core repulsion = 24456.454351 eV Total energy + Delta-G solvation = -4144.907443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.21874 -40.56929 -39.60909 -38.13839 -37.10196 -36.17465 -34.58842 -33.97599 -33.59510 -31.81594 -29.76183 -28.04214 -27.46374 -26.92499 -26.66125 -24.13830 -23.45638 -22.35168 -20.80441 -20.01218 -19.68423 -18.89653 -18.49399 -18.23549 -17.98301 -16.87580 -16.54808 -16.38346 -16.24514 -16.02225 -15.84365 -15.67225 -15.47830 -15.09936 -14.72992 -14.64852 -14.47850 -14.25572 -14.20271 -13.74289 -13.60501 -13.55168 -13.42418 -13.15037 -13.01026 -12.62504 -12.36976 -12.34053 -12.23084 -12.13004 -12.11161 -11.42893 -11.23864 -10.97823 -10.95772 -10.80060 -10.67723 -10.38251 -10.01477 -9.56034 -8.54979 -8.48131 -6.15712 0.00519 0.72022 1.13700 1.33114 1.46941 1.50533 2.17375 2.28381 2.50438 2.87336 3.19581 3.21436 3.53018 3.54686 3.62333 3.71690 3.99674 4.07135 4.13530 4.17285 4.22930 4.30596 4.42222 4.54990 4.60093 4.60643 4.63285 4.72621 4.74562 4.77623 4.93667 5.00964 5.06098 5.09207 5.09923 5.26431 5.27297 5.34670 5.47137 5.51819 5.68455 5.72873 5.85762 6.02491 6.25742 6.70400 6.83595 6.90778 6.95385 7.46316 7.77862 8.74924 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.002439 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.129815 B =11475.010690 C =12449.181809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 C 0.092 3.908 4 O -0.578 6.578 5 C 0.091 3.909 6 O -0.591 6.591 7 C 0.140 3.860 8 N -0.709 5.709 9 C 0.525 3.475 10 O -0.569 6.569 11 C -0.230 4.230 12 C 0.005 3.995 13 C -0.160 4.160 14 C 0.015 3.985 15 C -0.222 4.222 16 C 0.127 3.873 17 O -0.231 6.231 18 C -0.417 4.417 19 H 0.103 0.897 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.022 2.978 23 H -0.253 1.253 24 H -0.270 1.270 25 H -0.258 1.258 26 C -0.259 4.259 27 C -0.047 4.047 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.397 0.603 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.394 0.606 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.412 0.588 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.273 0.727 45 H 0.121 0.879 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.459 2.083 -21.309 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 C 0.014 3.986 4 O -0.386 6.386 5 C 0.014 3.986 6 O -0.399 6.399 7 C 0.015 3.985 8 N -0.363 5.363 9 C 0.315 3.685 10 O -0.449 6.449 11 C -0.250 4.250 12 C -0.014 4.014 13 C -0.161 4.161 14 C -0.003 4.003 15 C -0.242 4.242 16 C 0.076 3.924 17 O -0.138 6.138 18 C -0.492 4.492 19 H 0.120 0.880 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.841 3.159 23 H -0.178 1.178 24 H -0.194 1.194 25 H -0.183 1.183 26 C -0.278 4.278 27 C -0.065 4.065 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.247 0.753 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.244 0.756 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.250 0.750 40 H 0.193 0.807 41 H 0.188 0.812 42 H 0.135 0.865 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.917 2.319 -20.227 28.481 hybrid contribution 0.868 0.609 0.245 1.088 sum -19.048 2.928 -19.982 27.762 Atomic orbital electron populations 1.21732 0.91285 1.02992 1.03066 1.20810 0.97629 0.94364 0.93884 1.21882 0.97380 0.91562 0.87816 1.86326 1.77554 1.30606 1.44078 1.22123 0.80905 0.98929 0.96690 1.86457 1.20249 1.82176 1.50987 1.20973 0.98382 0.82260 0.96882 1.45738 1.53874 1.11511 1.25127 1.19147 0.79704 0.88003 0.81609 1.91010 1.38540 1.78234 1.37153 1.23055 1.06867 0.91272 1.03841 1.22584 0.90064 0.99106 0.89635 1.18884 0.96126 1.07105 0.93987 1.20652 0.90872 0.90881 0.97911 1.20174 1.01844 1.10785 0.91374 1.20005 0.87827 0.93016 0.91563 1.83876 1.35185 1.75502 1.19209 1.21862 1.06985 1.41407 0.78994 0.87989 1.26691 0.94115 0.95391 1.05978 1.70173 1.08480 1.39415 1.37913 0.84612 0.78610 0.79747 0.72976 1.17750 1.19434 1.18281 1.21094 0.96062 1.09660 1.01002 1.21192 0.96638 0.96099 0.92607 0.92228 0.90915 0.90950 0.93121 0.93915 0.75343 0.92300 0.92161 0.75606 0.93017 0.93460 0.75024 0.80702 0.81191 0.86525 0.88349 0.91753 0.86160 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.16 71.98 0.59 -1.04 16 2 C -0.07 -1.06 0.44 -52.18 -0.02 -1.09 16 3 C 0.09 1.54 5.77 71.98 0.42 1.96 16 4 O -0.58 -8.19 12.31 -148.98 -1.83 -10.02 16 5 C 0.09 1.27 5.60 71.98 0.40 1.68 16 6 O -0.59 -10.43 12.31 -148.98 -1.83 -12.26 16 7 C 0.14 3.16 4.42 86.38 0.38 3.54 16 8 N -0.71 -13.92 4.95 -467.49 -2.32 -16.23 16 9 C 0.52 14.18 6.77 86.32 0.58 14.76 16 10 O -0.57 -22.37 12.17 -4.40 -0.05 -22.42 16 11 C -0.23 -4.47 9.90 23.62 0.23 -4.23 16 12 C 0.01 0.12 9.80 23.82 0.23 0.36 16 13 C -0.16 -5.65 4.54 -20.13 -0.09 -5.74 16 14 C 0.02 0.62 6.59 22.55 0.15 0.77 16 15 C -0.22 -11.17 9.97 22.35 0.22 -10.95 16 16 C 0.13 7.04 6.66 22.72 0.15 7.19 16 17 O -0.23 -15.08 9.74 -20.28 -0.20 -15.28 16 18 C -0.42 -25.75 9.48 67.94 0.64 -25.10 16 19 H 0.10 5.77 5.18 -2.91 -0.02 5.76 16 20 C -0.02 -1.46 5.49 84.86 0.47 -0.99 16 21 N -0.92 -59.19 13.67 21.62 0.30 -58.90 16 22 Si 1.02 44.65 29.55 68.60 2.03 46.68 16 23 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 C -0.26 -12.39 9.14 22.34 0.20 -12.19 16 27 C -0.05 -1.79 9.78 22.55 0.22 -1.57 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.87 7.68 -2.39 -0.02 0.85 16 30 H 0.07 0.64 6.86 -2.39 -0.02 0.62 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.85 7.68 -2.39 -0.02 0.83 16 33 H 0.40 2.56 9.12 -74.06 -0.68 1.89 16 34 H 0.06 0.60 6.86 -2.39 -0.02 0.59 16 35 H 0.06 0.80 7.68 -2.39 -0.02 0.78 16 36 H 0.39 3.72 9.12 -74.05 -0.68 3.04 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.39 7.68 -2.39 -0.02 1.37 16 39 H 0.41 4.90 6.14 -92.71 -0.57 4.33 16 40 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.12 4.33 7.02 -2.91 -0.02 4.31 16 43 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 44 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 45 H 0.12 5.73 5.62 -2.91 -0.02 5.71 16 46 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -89.72 380.18 -0.01 -89.73 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.88 Total: 31.35 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 4.78 Total: -32.65 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -2.02 Total: -75.13 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -3.92 Total: -59.98 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -89.72 -0.01 -89.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492971185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.344 kcal (2) G-P(sol) polarization free energy of solvation -89.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds