Wall clock time and date at job start Tue Mar 31 2020 19:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47390 * 2 1 4 4 O 1.42901 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.35915 * 117.00058 * 180.02562 * 4 3 2 6 6 C 1.39280 * 119.92321 * 89.99760 * 5 4 3 7 7 O 1.36001 * 119.95366 * 359.97438 * 6 5 4 8 8 C 1.42896 * 116.99808 * 179.97438 * 7 6 5 9 9 C 1.38168 * 120.08555 * 180.25087 * 6 5 4 10 10 C 1.39977 * 119.91711 * 359.45794 * 9 6 5 11 11 C 1.46937 * 120.08633 * 180.26882 * 10 9 6 12 12 C 1.35149 * 119.99700 * 44.10339 * 11 10 9 13 13 C 1.41794 * 120.00318 * 10.56045 * 12 11 10 14 14 O 1.21779 * 119.99454 * 7.30460 * 13 12 11 15 15 N 1.34770 * 120.00254 * 187.29618 * 13 12 11 16 16 C 1.36745 * 120.00306 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99624 * 0.02562 * 16 15 13 18 18 C 1.39090 * 120.00359 * 180.02562 * 16 15 13 19 19 N 1.31343 * 120.00227 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00019 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47054 * 89.99791 * 20 18 16 22 22 H 1.48492 * 109.47204 * 210.00039 * 20 18 16 23 23 H 1.48502 * 109.47096 * 329.99989 * 20 18 16 24 24 C 1.39982 * 119.83418 * 0.54117 * 10 9 6 25 25 C 1.38175 * 119.91461 * 359.73183 * 24 10 9 26 26 O 1.35997 * 119.96137 * 179.97438 * 25 24 10 27 27 C 1.42904 * 116.99561 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.46626 * 300.00135 * 1 2 3 29 29 H 1.09000 * 109.46967 * 59.99422 * 1 2 3 30 30 H 1.08996 * 109.47323 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46529 * 240.00385 * 2 1 3 32 32 H 1.09000 * 109.46967 * 120.00578 * 2 1 3 33 33 H 1.09010 * 109.46839 * 60.00298 * 3 2 1 34 34 H 1.09001 * 109.47511 * 300.00778 * 3 2 1 35 35 H 1.08998 * 109.47267 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.46869 * 299.99838 * 8 7 6 37 37 H 1.09004 * 109.47628 * 59.99948 * 8 7 6 38 38 H 1.08000 * 120.04094 * 179.70574 * 9 6 5 39 39 H 1.07997 * 120.00228 * 224.10069 * 11 10 9 40 40 H 1.08003 * 119.99763 * 190.56384 * 12 11 10 41 41 H 0.97004 * 120.00277 * 0.02562 * 15 13 12 42 42 H 0.96998 * 120.00569 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.04632 * 179.74675 * 24 10 9 44 44 H 1.09003 * 109.46801 * 299.99423 * 27 26 25 45 45 H 1.08995 * 109.47361 * 59.99823 * 27 26 25 46 46 H 1.09005 * 109.46445 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0862 2.6534 -0.0001 6 6 4.4021 3.2717 1.2072 7 8 4.0922 2.6632 2.3833 8 6 4.4454 3.3534 3.5837 9 6 5.0247 4.5052 1.2116 10 6 5.3483 5.1282 0.0006 11 6 6.0158 6.4372 0.0010 12 6 7.0451 6.6705 0.8452 13 6 7.6272 5.5979 1.5670 14 8 7.2919 4.4515 1.3298 15 7 8.5517 5.8471 2.5155 16 6 9.1134 4.8126 3.2114 17 1 8.8166 3.7958 3.0005 18 6 10.0671 5.0698 4.1906 19 7 10.6070 4.0761 4.8586 20 14 10.5800 6.8284 4.5559 21 1 9.7027 7.3903 5.6141 22 1 11.9902 6.8464 5.0207 23 1 10.4548 7.6468 3.3230 24 6 5.0293 4.5037 -1.2109 25 6 4.4015 3.2728 -1.2072 26 8 4.0906 2.6655 -2.3837 27 6 4.4428 3.3570 -3.5836 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 4.1426 2.7601 4.4465 36 1 5.5240 3.5086 3.6095 37 1 3.9387 4.3181 3.6107 38 1 5.2651 4.9862 2.1483 39 1 5.6840 7.2128 -0.6733 40 1 7.4243 7.6741 0.9700 41 1 8.8186 6.7603 2.7047 42 1 11.2718 4.2554 5.5418 43 1 5.2737 4.9832 -2.1472 44 1 3.9359 4.3217 -3.6091 45 1 5.5213 3.5124 -3.6103 46 1 4.1392 2.7645 -4.4468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493237321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:28 Heat of formation + Delta-G solvation = -111.569464 kcal Electronic energy + Delta-G solvation = -29638.883382 eV Core-core repulsion = 25495.298882 eV Total energy + Delta-G solvation = -4143.584500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80486 -40.53852 -39.90990 -38.95390 -37.62807 -35.99966 -34.86768 -33.90605 -33.66106 -30.67700 -30.40610 -28.70831 -27.88803 -27.51795 -26.63826 -24.33349 -22.90501 -22.54459 -22.43705 -21.06138 -20.07675 -19.16690 -18.48334 -18.08911 -17.65040 -17.43142 -17.08419 -16.74276 -16.46214 -16.36913 -16.12550 -15.75623 -15.56329 -15.28167 -14.99069 -14.80060 -14.66755 -14.41175 -13.92827 -13.75143 -13.63412 -13.35362 -13.10607 -13.04813 -12.98599 -12.88758 -12.49161 -12.44418 -12.39448 -12.17524 -12.01000 -11.87114 -11.83739 -11.70784 -11.53239 -10.81844 -10.36894 -10.28385 -10.25605 -9.06690 -8.67901 -8.46855 -5.99890 -0.32450 0.49136 0.82266 1.28391 1.36621 1.42199 1.92559 2.19010 2.47784 2.57390 2.74753 2.87360 3.13255 3.27447 3.72949 3.96220 4.04192 4.07917 4.13556 4.20427 4.23652 4.29955 4.32448 4.36311 4.41523 4.44008 4.46568 4.59901 4.61840 4.62305 4.70477 4.75615 4.86122 4.95186 5.11018 5.16561 5.17550 5.24835 5.34314 5.34705 5.46574 5.51092 5.70926 5.97727 6.12723 6.33876 6.56340 6.76967 6.87740 7.38365 8.01369 8.70081 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.003309 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.954223 B = 8459.416519 C = 9618.224946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.064 3.936 4 O -0.335 6.335 5 C 0.008 3.992 6 C 0.109 3.891 7 O -0.326 6.326 8 C 0.031 3.969 9 C -0.146 4.146 10 C 0.005 3.995 11 C -0.041 4.041 12 C -0.190 4.190 13 C 0.455 3.545 14 O -0.606 6.606 15 N -0.576 5.576 16 C -0.318 4.318 17 H 0.055 0.945 18 C -0.015 4.015 19 N -0.926 5.926 20 Si 0.964 3.036 21 H -0.255 1.255 22 H -0.276 1.276 23 H -0.231 1.231 24 C -0.212 4.212 25 C 0.124 3.876 26 O -0.325 6.325 27 C 0.016 3.984 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.123 0.877 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.187 0.813 40 H 0.166 0.834 41 H 0.389 0.611 42 H 0.281 0.719 43 H 0.166 0.834 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 7.470 -12.576 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.010 4.010 4 O -0.253 6.253 5 C -0.037 4.037 6 C 0.063 3.937 7 O -0.239 6.239 8 C -0.064 4.064 9 C -0.165 4.165 10 C 0.005 3.995 11 C -0.062 4.062 12 C -0.210 4.210 13 C 0.247 3.753 14 O -0.493 6.493 15 N -0.214 5.214 16 C -0.448 4.448 17 H 0.074 0.926 18 C -0.214 4.214 19 N -0.566 5.566 20 Si 0.783 3.217 21 H -0.180 1.180 22 H -0.201 1.201 23 H -0.154 1.154 24 C -0.230 4.230 25 C 0.078 3.922 26 O -0.239 6.239 27 C -0.078 4.078 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.141 0.859 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.134 0.866 39 H 0.204 0.796 40 H 0.184 0.816 41 H 0.224 0.776 42 H 0.090 0.910 43 H 0.183 0.817 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.475 6.077 -12.543 22.352 hybrid contribution 1.267 0.750 1.003 1.781 sum -16.208 6.828 -11.540 21.036 Atomic orbital electron populations 1.21652 0.92415 1.03209 1.02510 1.21462 0.97398 0.93914 1.02812 1.22915 0.78841 0.99270 1.00009 1.86047 1.20802 1.24343 1.94082 1.17290 1.08080 0.89965 0.88402 1.19018 0.97311 0.91874 0.85511 1.86009 1.77709 1.47348 1.12874 1.23152 0.99804 0.98746 0.84697 1.21017 1.01323 0.95107 0.99087 1.18791 0.93985 0.95199 0.91542 1.22593 0.93090 0.94436 0.96056 1.22323 0.99880 0.99310 0.99518 1.17783 0.83440 0.90765 0.83301 1.90832 1.64200 1.24904 1.69366 1.42159 1.37347 1.08141 1.33801 1.18990 1.20580 0.89116 1.16068 0.92637 1.26183 0.95808 1.04076 0.95354 1.69775 1.28284 1.34459 1.24045 0.85380 0.78748 0.76987 0.80554 1.17979 1.20074 1.15408 1.21323 1.06622 0.95757 0.99323 1.18739 0.96729 0.91613 0.85133 1.86091 1.77854 1.47229 1.12686 1.23410 1.01255 0.99176 0.83935 0.92282 0.91742 0.90562 0.91284 0.92040 0.93857 0.92822 0.85898 0.95095 0.91211 0.86595 0.79578 0.81611 0.77556 0.90978 0.81685 0.90651 0.92385 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 71.98 0.71 -1.64 16 2 C -0.12 -2.82 6.30 30.59 0.19 -2.63 16 3 C 0.06 1.90 6.06 71.98 0.44 2.34 16 4 O -0.34 -13.18 9.60 -68.30 -0.66 -13.83 16 5 C 0.01 0.31 5.76 22.77 0.13 0.44 16 6 C 0.11 4.55 6.69 22.50 0.15 4.70 16 7 O -0.33 -13.41 10.27 -79.45 -0.82 -14.23 16 8 C 0.03 1.07 9.81 113.37 1.11 2.18 16 9 C -0.15 -5.80 5.60 22.67 0.13 -5.67 16 10 C 0.01 0.18 4.49 -20.16 -0.09 0.09 16 11 C -0.04 -1.07 9.80 23.84 0.23 -0.83 16 12 C -0.19 -5.70 9.71 22.44 0.22 -5.48 16 13 C 0.45 20.07 6.57 85.12 0.56 20.63 16 14 O -0.61 -32.29 11.57 -4.60 -0.05 -32.34 16 15 N -0.58 -26.62 5.07 -315.01 -1.60 -28.22 16 16 C -0.32 -18.29 10.16 84.13 0.85 -17.43 16 17 H 0.06 3.85 7.38 -2.91 -0.02 3.83 16 18 C -0.01 -0.79 5.50 84.97 0.47 -0.32 16 19 N -0.93 -55.20 13.95 21.69 0.30 -54.89 16 20 Si 0.96 37.96 27.74 68.60 1.90 39.86 16 21 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 22 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.23 -7.63 6.52 99.48 0.65 -6.99 16 24 C -0.21 -6.47 8.77 22.68 0.20 -6.27 16 25 C 0.12 4.31 6.69 22.51 0.15 4.46 16 26 O -0.32 -9.79 10.27 -79.41 -0.82 -10.61 16 27 C 0.02 0.30 9.81 113.37 1.11 1.41 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.03 1.30 7.67 -2.39 -0.02 1.28 16 37 H 0.07 2.07 7.64 -2.39 -0.02 2.05 16 38 H 0.12 4.77 5.25 -2.91 -0.02 4.76 16 39 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.39 14.85 5.72 -92.71 -0.53 14.32 16 42 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.17 3.64 6.28 -2.91 -0.02 3.62 16 44 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 45 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 46 H 0.12 1.56 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -83.17 383.78 5.25 -77.92 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: 0.41 Total: 40.36 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.57 Total: -4.03 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.29 Total: -83.12 kcal Atomic # 8 Polarization: -68.66 SS G_CDS: -2.34 Total: -71.00 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 1.90 Total: 39.86 kcal Total: -83.17 5.25 -77.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493237321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.650 kcal (2) G-P(sol) polarization free energy of solvation -83.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds