Wall clock time and date at job start Tue Mar 31 2020 18:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99502 * 2 1 4 4 O 1.20819 * 120.00232 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99587 * 180.02562 * 3 2 1 6 6 O 1.42897 * 109.46743 * 180.02562 * 5 3 2 7 7 C 1.35918 * 116.99643 * 180.02562 * 6 5 3 8 8 C 1.38848 * 119.98313 * 0.02562 * 7 6 5 9 9 C 1.38250 * 120.23357 * 179.97438 * 8 7 6 10 10 C 1.38007 * 120.20928 * 359.74261 * 9 8 7 11 11 C 1.39562 * 119.96428 * 0.51210 * 10 9 8 12 12 C 1.47860 * 120.11706 * 179.76471 * 11 10 9 13 13 O 1.21552 * 119.99497 * 157.11614 * 12 11 10 14 14 N 1.34774 * 120.00071 * 337.11780 * 12 11 10 15 15 C 1.46499 * 119.99887 * 221.58449 * 14 12 11 16 16 C 1.50707 * 109.47137 * 270.00110 * 15 14 12 17 17 H 1.08009 * 119.99711 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00210 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99829 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99986 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47331 * 59.99710 * 20 18 16 22 22 H 1.48504 * 109.47154 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47091 * 299.99635 * 20 18 16 24 24 C 1.46503 * 119.99869 * 41.58426 * 14 12 11 25 25 C 1.52995 * 109.46976 * 266.98882 * 24 14 12 26 26 C 1.53003 * 109.47198 * 26.99477 * 24 14 12 27 27 C 1.38452 * 119.98427 * 179.97438 * 7 6 5 28 28 H 1.08997 * 109.47213 * 60.00331 * 1 2 3 29 29 H 1.09002 * 109.46754 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47282 * 299.99546 * 1 2 3 31 31 H 1.09000 * 109.47522 * 59.99998 * 5 3 2 32 32 H 1.09002 * 109.47136 * 299.99804 * 5 3 2 33 33 H 1.07998 * 119.88642 * 359.95943 * 8 7 6 34 34 H 1.08003 * 119.89416 * 180.02562 * 9 8 7 35 35 H 1.08002 * 120.01709 * 180.25593 * 10 9 8 36 36 H 1.08996 * 109.47270 * 150.00259 * 15 14 12 37 37 H 1.08995 * 109.47414 * 29.99735 * 15 14 12 38 38 H 0.96993 * 119.99724 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.46786 * 146.99318 * 24 14 12 40 40 H 1.09000 * 109.47056 * 61.65534 * 25 24 14 41 41 H 1.09003 * 109.46826 * 181.64731 * 25 24 14 42 42 H 1.08995 * 109.47412 * 301.65405 * 25 24 14 43 43 H 1.08999 * 109.46961 * 103.38266 * 26 24 14 44 44 H 1.09003 * 109.46721 * 223.38376 * 26 24 14 45 45 H 1.09000 * 109.47003 * 343.37984 * 26 24 14 46 46 H 1.08009 * 120.10144 * 0.04170 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6453 0.0001 7 6 5.3076 2.8937 -0.0008 8 6 6.2096 1.8381 -0.0029 9 6 7.5699 2.0848 -0.0044 10 6 8.0404 3.3822 -0.0092 11 6 7.1413 4.4497 -0.0017 12 6 7.6417 5.8410 -0.0015 13 8 6.9323 6.7419 -0.4048 14 7 8.8842 6.1103 0.4458 15 6 9.1214 7.2874 1.2850 16 6 9.4526 8.4693 0.4105 17 1 9.4836 8.3549 -0.6630 18 6 9.7169 9.6964 0.9810 19 7 9.6796 9.8356 2.2882 20 14 10.1280 11.1612 -0.1030 21 1 8.9937 11.4301 -1.0229 22 1 10.3684 12.3545 0.7477 23 1 11.3481 10.8636 -0.8953 24 6 9.9975 5.2258 0.0928 25 6 10.1792 4.1729 1.1878 26 6 9.6957 4.5320 -1.2371 27 6 5.7688 4.1992 -0.0007 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 3.9558 0.7810 -0.8908 32 1 3.9564 0.7807 0.8892 33 1 5.8473 0.8207 -0.0032 34 1 8.2667 1.2595 -0.0065 35 1 9.1037 3.5714 -0.0145 36 1 9.9542 7.0904 1.9602 37 1 8.2258 7.5055 1.8667 38 1 9.8653 10.6989 2.6894 39 1 10.9112 5.8123 -0.0025 40 1 9.2760 3.5673 1.2630 41 1 11.0259 3.5329 0.9395 42 1 10.3651 4.6680 2.1408 43 1 10.2730 5.0039 -2.0322 44 1 9.9671 3.4787 -1.1670 45 1 8.6322 4.6192 -1.4593 46 1 5.0681 5.0211 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522585781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:27 Heat of formation + Delta-G solvation = -58.273271 kcal Electronic energy + Delta-G solvation = -28980.149153 eV Core-core repulsion = 24838.875749 eV Total energy + Delta-G solvation = -4141.273404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.33294 -41.70984 -40.51536 -38.57277 -37.82987 -37.40884 -35.29111 -33.35698 -32.30605 -31.43744 -30.01989 -29.18151 -28.11866 -27.88166 -25.55998 -24.16489 -23.84741 -22.83344 -22.20022 -20.22704 -19.14442 -18.69683 -18.48567 -18.15073 -18.04022 -17.71198 -17.26055 -17.05760 -16.59123 -16.37079 -16.32779 -15.69609 -15.05073 -14.88500 -14.74858 -14.61949 -14.36851 -14.34166 -14.13732 -13.97817 -13.68178 -13.35193 -13.20549 -13.03149 -13.02399 -12.77054 -12.67205 -12.51016 -12.24367 -12.11936 -12.03227 -11.92291 -11.86174 -11.72054 -11.60518 -10.87562 -10.72530 -10.61959 -10.02059 -9.29473 -9.11908 -8.20694 -6.35120 -0.16602 0.41328 0.96724 1.04194 1.33473 1.38584 1.45816 1.67113 2.19489 2.39181 2.57845 2.80968 3.06251 3.53212 3.58932 3.82231 3.89352 3.98213 4.02558 4.02873 4.11390 4.16257 4.27399 4.29570 4.33918 4.50784 4.55622 4.68942 4.70995 4.79030 4.86132 4.90175 5.04839 5.07289 5.12397 5.18262 5.21944 5.24535 5.42655 5.45152 5.48535 5.63211 5.66946 5.95876 6.07484 6.26989 6.56883 6.71187 6.79092 7.15052 7.36047 8.83991 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.002499 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.165428 B =11200.114906 C =12254.456802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.463 3.537 4 O -0.534 6.534 5 C 0.063 3.937 6 O -0.328 6.328 7 C 0.109 3.891 8 C -0.167 4.167 9 C -0.083 4.083 10 C -0.176 4.176 11 C -0.116 4.116 12 C 0.560 3.440 13 O -0.569 6.569 14 N -0.628 5.628 15 C 0.272 3.728 16 C -0.536 4.536 17 H 0.046 0.954 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.963 3.037 21 H -0.284 1.284 22 H -0.275 1.275 23 H -0.260 1.260 24 C 0.126 3.874 25 C -0.206 4.206 26 C -0.179 4.179 27 C -0.127 4.127 28 H 0.060 0.940 29 H 0.142 0.858 30 H 0.060 0.940 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.180 0.820 34 H 0.185 0.815 35 H 0.224 0.776 36 H 0.035 0.965 37 H -0.014 1.014 38 H 0.267 0.733 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.126 0.874 45 H 0.055 0.945 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 -31.109 -4.415 31.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.306 3.694 4 O -0.422 6.422 5 C -0.012 4.012 6 O -0.243 6.243 7 C 0.064 3.936 8 C -0.186 4.186 9 C -0.100 4.100 10 C -0.192 4.192 11 C -0.120 4.120 12 C 0.351 3.649 13 O -0.448 6.448 14 N -0.362 5.362 15 C 0.151 3.849 16 C -0.575 4.575 17 H 0.064 0.936 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.788 3.212 21 H -0.210 1.210 22 H -0.200 1.200 23 H -0.184 1.184 24 C 0.023 3.977 25 C -0.262 4.262 26 C -0.235 4.235 27 C -0.147 4.147 28 H 0.079 0.921 29 H 0.160 0.840 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.198 0.802 34 H 0.202 0.798 35 H 0.239 0.761 36 H 0.052 0.948 37 H 0.004 0.996 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.144 0.856 45 H 0.073 0.927 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.589 -30.068 -4.476 31.105 hybrid contribution -0.687 2.116 -0.160 2.231 sum -7.276 -27.952 -4.637 29.253 Atomic orbital electron populations 1.23633 0.74064 1.06210 1.02531 1.86441 1.25295 1.31018 1.83764 1.23563 0.92005 0.81721 0.72101 1.90744 1.67883 1.37964 1.45655 1.22297 0.87428 0.82640 1.08864 1.86049 1.21151 1.27419 1.89680 1.18634 0.81933 0.93391 0.99602 1.21907 0.93865 0.98991 1.03815 1.21512 0.95353 0.96688 0.96475 1.24401 1.05364 0.92085 0.97309 1.19907 0.93542 0.93124 1.05433 1.18858 0.81956 0.88667 0.75436 1.90691 1.60426 1.50574 1.43122 1.47845 1.06745 1.28052 1.53582 1.18691 0.94704 0.82444 0.89025 1.21710 1.46883 0.95591 0.93332 0.93600 1.25822 0.95302 1.01612 0.96495 1.70019 1.50285 1.25692 1.10816 0.85538 0.78770 0.78338 0.78567 1.21027 1.19983 1.18419 1.21399 0.89214 0.91513 0.95538 1.23213 1.05429 0.99352 0.98255 1.23007 1.02267 1.02755 0.95515 1.20332 0.94601 0.95551 1.04173 0.92104 0.84033 0.92140 0.83753 0.83848 0.80249 0.79756 0.76053 0.94752 0.99571 0.92412 0.90161 0.87745 0.87080 0.93408 0.92166 0.85634 0.92675 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -4.80 10.57 -51.40 -0.54 -5.35 16 3 C 0.46 8.91 8.03 71.24 0.57 9.48 16 4 O -0.53 -15.79 16.25 28.42 0.46 -15.33 16 5 C 0.06 0.84 5.33 71.24 0.38 1.22 16 6 O -0.33 -8.41 9.67 -73.54 -0.71 -9.12 16 7 C 0.11 2.77 6.68 22.47 0.15 2.92 16 8 C -0.17 -2.50 9.03 22.42 0.20 -2.30 16 9 C -0.08 -1.17 10.03 22.22 0.22 -0.95 16 10 C -0.18 -4.05 4.51 22.53 0.10 -3.95 16 11 C -0.12 -4.10 5.11 -20.10 -0.10 -4.20 16 12 C 0.56 26.25 5.64 86.79 0.49 26.74 16 13 O -0.57 -32.93 16.91 -3.88 -0.07 -32.99 16 14 N -0.63 -28.31 2.42 -805.52 -1.95 -30.26 16 15 C 0.27 15.20 5.19 85.64 0.44 15.64 16 16 C -0.54 -32.59 9.25 25.60 0.24 -32.35 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 18 C 0.01 0.38 5.46 84.65 0.46 0.84 16 19 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 20 Si 0.96 47.24 29.54 68.60 2.03 49.26 16 21 H -0.28 -14.24 7.11 99.48 0.71 -13.54 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 24 C 0.13 4.01 3.13 44.99 0.14 4.15 16 25 C -0.21 -4.70 8.60 71.98 0.62 -4.08 16 26 C -0.18 -4.46 7.92 71.98 0.57 -3.89 16 27 C -0.13 -4.48 9.53 22.63 0.22 -4.26 16 28 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 29 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.15 0.85 7.65 -2.39 -0.02 0.84 16 32 H 0.14 0.88 7.66 -2.39 -0.02 0.86 16 33 H 0.18 0.83 6.28 -2.91 -0.02 0.81 16 34 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.22 4.49 0.64 -47.70 -0.03 4.46 16 36 H 0.03 1.90 8.07 -2.39 -0.02 1.88 16 37 H -0.01 -0.87 8.03 -2.39 -0.02 -0.89 16 38 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.08 2.74 8.09 -2.39 -0.02 2.72 16 40 H 0.10 2.18 4.12 -4.09 -0.02 2.16 16 41 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 44 H 0.13 1.78 6.53 -2.39 -0.02 1.76 16 45 H 0.05 1.68 4.08 -2.39 -0.01 1.67 16 46 H 0.10 4.17 7.82 -2.91 -0.02 4.15 16 Total: -1.00 -93.06 375.92 6.39 -86.67 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.98 Total: 7.76 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 5.90 Total: 6.49 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -1.66 Total: -87.40 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -0.86 Total: -62.79 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -93.06 6.39 -86.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522585781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.402 kcal (2) G-P(sol) polarization free energy of solvation -93.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds