Wall clock time and date at job start Tue Mar 31 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36013 * 117.00044 * 2 1 4 4 C 1.38181 * 119.90809 * 0.02562 * 3 2 1 5 5 C 1.39686 * 119.89846 * 180.02562 * 4 3 2 6 6 C 1.47608 * 120.08010 * 180.02562 * 5 4 3 7 7 O 1.21591 * 120.00192 * 48.54191 * 6 5 4 8 8 N 1.34775 * 119.99926 * 228.53455 * 6 5 4 9 9 C 1.46500 * 120.00292 * 4.20457 * 8 6 5 10 10 C 1.50698 * 109.47172 * 262.68704 * 9 8 6 11 11 H 1.07995 * 120.00312 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99736 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00009 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99813 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47073 * 60.00285 * 14 12 10 16 16 H 1.48496 * 109.47047 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47219 * 300.00077 * 14 12 10 18 18 C 1.46504 * 120.00019 * 184.20745 * 8 6 5 19 19 C 1.52995 * 109.47373 * 116.19457 * 18 8 6 20 20 C 1.52998 * 109.46995 * 236.19493 * 18 8 6 21 21 C 1.39656 * 119.83379 * 0.33177 * 5 4 3 22 22 C 1.38376 * 120.05431 * 359.45102 * 21 5 4 23 23 C 1.39102 * 120.00308 * 0.43379 * 22 21 5 24 24 O 1.36058 * 120.73142 * 180.13132 * 23 22 21 25 25 C 1.43148 * 116.75204 * 342.68441 * 24 23 22 26 26 C 1.53469 * 108.24968 * 46.26388 * 25 24 23 27 27 O 1.36161 * 119.23602 * 180.09402 * 22 21 5 28 28 H 1.08999 * 109.47209 * 300.00114 * 1 2 3 29 29 H 1.09002 * 109.47325 * 59.99553 * 1 2 3 30 30 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.05118 * 0.03881 * 4 3 2 32 32 H 1.09003 * 109.46807 * 22.68314 * 9 8 6 33 33 H 1.09000 * 109.47086 * 142.68401 * 9 8 6 34 34 H 0.97004 * 119.99899 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.46895 * 356.19249 * 18 8 6 36 36 H 1.08997 * 109.47188 * 60.00237 * 19 18 8 37 37 H 1.09000 * 109.46948 * 180.02562 * 19 18 8 38 38 H 1.08996 * 109.47096 * 299.99820 * 19 18 8 39 39 H 1.09002 * 109.47603 * 59.99719 * 20 18 8 40 40 H 1.09000 * 109.47077 * 179.97438 * 20 18 8 41 41 H 1.08997 * 109.47317 * 299.99609 * 20 18 8 42 42 H 1.08004 * 119.96731 * 179.69218 * 21 5 4 43 43 H 1.08997 * 109.71368 * 286.57144 * 25 24 23 44 44 H 1.09004 * 109.70726 * 165.94754 * 25 24 23 45 45 H 1.08997 * 109.71869 * 180.55217 * 26 25 24 46 46 H 1.09003 * 109.71856 * 59.90846 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2920 2.3696 0.0005 5 6 1.9264 3.6141 0.0000 6 6 1.1244 4.8533 0.0011 7 8 0.2097 4.9848 0.7914 8 7 1.4061 5.8391 -0.8737 9 6 2.4471 5.6448 -1.8860 10 6 3.7361 6.2603 -1.4056 11 1 3.7758 6.7478 -0.4428 12 6 4.8647 6.2009 -2.1954 13 7 4.8162 5.6077 -3.3681 14 14 6.4623 6.9645 -1.6003 15 1 6.8782 6.3158 -0.3309 16 1 7.5175 6.7675 -2.6264 17 1 6.2610 8.4178 -1.3708 18 6 0.6713 7.1050 -0.8123 19 6 1.6377 8.2393 -0.4653 20 6 0.0229 7.3847 -2.1696 21 6 3.3212 3.6829 -0.0081 22 6 4.0724 2.5208 -0.0041 23 6 3.4384 1.2827 -0.0011 24 8 4.1625 0.1308 0.0055 25 6 5.5396 0.2332 -0.3713 26 6 6.1526 1.4300 0.3685 27 8 5.4313 2.6073 -0.0102 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2135 2.3123 0.0016 32 1 2.5948 4.5781 -2.0552 33 1 2.1417 6.1216 -2.8174 34 1 5.6103 5.5656 -3.9235 35 1 -0.1019 7.0395 -0.0468 36 1 2.4108 8.3048 -1.2308 37 1 1.0908 9.1811 -0.4192 38 1 2.0996 8.0401 0.5016 39 1 -0.6655 6.5766 -2.4168 40 1 -0.5241 8.3263 -2.1238 41 1 0.7961 7.4502 -2.9350 42 1 3.8139 4.6440 -0.0136 43 1 5.6158 0.3880 -1.4475 44 1 6.0659 -0.6799 -0.0926 45 1 7.2012 1.5361 0.0908 46 1 6.0702 1.2785 1.4448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522962915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:25 Heat of formation + Delta-G solvation = -111.490348 kcal Electronic energy + Delta-G solvation = -30923.043515 eV Core-core repulsion = 26779.462446 eV Total energy + Delta-G solvation = -4143.581069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05318 -39.49373 -38.85931 -36.89757 -36.13714 -35.70162 -32.97509 -31.65742 -30.78639 -29.50455 -28.36249 -27.32434 -27.03467 -26.61610 -24.78707 -22.98396 -22.72116 -21.62230 -20.30341 -18.93722 -18.01454 -17.42887 -17.34018 -16.66168 -16.36598 -15.89025 -15.65224 -15.32688 -14.97878 -14.75945 -14.58056 -14.36999 -14.09792 -13.96635 -13.64777 -13.35865 -13.05467 -12.82576 -12.47486 -12.37179 -12.28135 -11.80057 -11.75376 -11.48996 -11.44854 -11.40928 -11.16034 -10.98924 -10.85498 -10.80349 -10.64975 -10.37468 -10.34651 -10.12217 -9.93027 -9.57679 -9.15154 -8.53195 -7.84425 -7.72676 -7.55570 -6.17302 -4.22394 1.36041 1.77161 3.22560 3.25814 3.27157 3.30253 3.34168 3.38164 3.58048 3.84901 4.19221 4.35315 4.44561 4.94907 5.01794 5.07239 5.11045 5.17145 5.27989 5.29059 5.29748 5.46715 5.55575 5.57839 5.62356 5.71988 5.78170 5.83413 5.88708 6.15664 6.22115 6.24117 6.41000 6.48280 6.56445 6.69031 6.75727 6.84135 6.99517 7.09280 7.12445 7.27238 7.46710 7.57160 7.75143 7.83111 8.06016 8.32801 8.77457 8.95501 9.42254 10.88984 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009481 B = 0.006064 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.432408 B = 4616.242622 C = 6911.699157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.115 3.885 4 C -0.162 4.162 5 C -0.080 4.080 6 C 0.562 3.438 7 O -0.570 6.570 8 N -0.581 5.581 9 C 0.231 3.769 10 C -0.538 4.538 11 H 0.066 0.934 12 C 0.074 3.926 13 N -0.882 5.882 14 Si 0.889 3.111 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.138 3.862 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.086 4.086 22 C 0.079 3.921 23 C 0.030 3.970 24 O -0.298 6.298 25 C 0.020 3.980 26 C 0.018 3.982 27 O -0.290 6.290 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.180 0.820 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -7.714 3.921 8.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.069 3.931 4 C -0.182 4.182 5 C -0.083 4.083 6 C 0.350 3.650 7 O -0.452 6.452 8 N -0.310 5.310 9 C 0.111 3.889 10 C -0.576 4.576 11 H 0.084 0.916 12 C -0.131 4.131 13 N -0.519 5.519 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.034 3.966 19 C -0.215 4.215 20 C -0.216 4.216 21 C -0.105 4.105 22 C 0.034 3.966 23 C -0.016 4.016 24 O -0.213 6.213 25 C -0.056 4.056 26 C -0.058 4.058 27 O -0.204 6.204 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.155 0.845 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.196 0.804 43 H 0.095 0.905 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.322 -7.884 4.112 9.190 hybrid contribution 1.103 0.363 0.029 1.162 sum -1.219 -7.522 4.141 8.672 Atomic orbital electron populations 1.23044 0.78775 1.03482 1.01577 1.86112 1.20829 1.25833 1.89408 1.17740 0.88381 0.84850 1.02083 1.20868 0.99897 0.90117 1.07295 1.19321 0.92932 0.93057 1.02993 1.18087 0.82877 0.83282 0.80762 1.90682 1.31946 1.81486 1.41079 1.48257 1.37255 1.12917 1.32619 1.19569 0.84434 0.98415 0.86480 1.21394 0.94211 1.37681 1.04291 0.91586 1.24881 0.98745 0.94811 0.94655 1.69907 1.29831 1.41999 1.10166 0.86688 0.83073 0.79771 0.78865 1.19706 1.21270 1.20193 1.20858 0.94158 0.83878 0.97657 1.22203 1.00225 0.96079 1.03016 1.22104 1.00756 1.00744 0.97975 1.21475 0.91733 0.99487 0.97790 1.18442 0.83183 0.91898 1.03087 1.18152 0.88725 0.85255 1.09431 1.86308 1.22014 1.28382 1.84600 1.23599 0.81361 1.00327 1.00319 1.23604 0.97312 0.85138 0.99746 1.86496 1.14396 1.35356 1.84121 0.92596 0.92669 0.88502 0.84457 0.93928 0.94362 0.92513 0.89697 0.89696 0.93425 0.93032 0.93085 0.92354 0.91346 0.80354 0.90476 0.86500 0.86380 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -5.05 10.24 -35.21 -0.36 -5.41 16 3 C 0.11 2.10 6.69 -39.18 -0.26 1.83 16 4 C -0.16 -3.00 8.69 -39.06 -0.34 -3.34 16 5 C -0.08 -1.65 4.72 -105.00 -0.50 -2.15 16 6 C 0.56 12.21 7.20 -12.44 -0.09 12.12 16 7 O -0.57 -13.16 16.36 5.29 0.09 -13.08 16 8 N -0.58 -12.25 2.44 -168.66 -0.41 -12.66 16 9 C 0.23 5.34 4.37 -5.19 -0.02 5.32 16 10 C -0.54 -13.07 4.66 -34.44 -0.16 -13.23 16 11 H 0.07 1.62 6.84 -52.49 -0.36 1.26 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 13 N -0.88 -23.57 13.29 55.43 0.74 -22.84 16 14 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 18 C 0.14 2.56 3.25 -67.93 -0.22 2.34 16 19 C -0.16 -2.79 8.17 37.16 0.30 -2.49 16 20 C -0.16 -2.57 9.06 37.16 0.34 -2.23 16 21 C -0.09 -1.84 7.62 -39.00 -0.30 -2.14 16 22 C 0.08 1.58 6.48 -39.21 -0.25 1.33 16 23 C 0.03 0.56 6.52 -38.84 -0.25 0.31 16 24 O -0.30 -5.05 10.16 -44.81 -0.46 -5.50 16 25 C 0.02 0.25 7.26 37.40 0.27 0.52 16 26 C 0.02 0.24 7.26 37.40 0.27 0.51 16 27 O -0.29 -5.49 10.41 -33.05 -0.34 -5.83 16 28 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 29 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.14 2.29 6.27 -52.49 -0.33 1.96 16 32 H 0.04 1.07 5.95 -51.93 -0.31 0.76 16 33 H 0.04 0.93 6.31 -51.93 -0.33 0.60 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.08 1.60 6.91 -51.93 -0.36 1.25 16 36 H 0.08 1.67 6.47 -51.93 -0.34 1.33 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.19 6.63 -51.93 -0.34 0.85 16 42 H 0.18 4.16 4.93 -52.48 -0.26 3.90 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -30.38 368.07 -6.89 -37.27 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.35 Total: 5.68 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.32 Total: 1.78 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.33 Total: -35.49 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.07 Total: -29.82 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.38 -6.89 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522962915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.223 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds