Wall clock time and date at job start Tue Mar 31 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36013 * 117.00044 * 2 1 4 4 C 1.38181 * 119.90809 * 0.02562 * 3 2 1 5 5 C 1.39686 * 119.89846 * 180.02562 * 4 3 2 6 6 C 1.47608 * 120.08010 * 180.02562 * 5 4 3 7 7 O 1.21591 * 120.00192 * 48.54191 * 6 5 4 8 8 N 1.34775 * 119.99926 * 228.53455 * 6 5 4 9 9 C 1.46500 * 120.00292 * 4.20457 * 8 6 5 10 10 C 1.50698 * 109.47172 * 262.68704 * 9 8 6 11 11 H 1.07995 * 120.00312 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99736 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00009 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99813 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47073 * 60.00285 * 14 12 10 16 16 H 1.48496 * 109.47047 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47219 * 300.00077 * 14 12 10 18 18 C 1.46504 * 120.00019 * 184.20745 * 8 6 5 19 19 C 1.52995 * 109.47373 * 116.19457 * 18 8 6 20 20 C 1.52998 * 109.46995 * 236.19493 * 18 8 6 21 21 C 1.39656 * 119.83379 * 0.33177 * 5 4 3 22 22 C 1.38376 * 120.05431 * 359.45102 * 21 5 4 23 23 C 1.39102 * 120.00308 * 0.43379 * 22 21 5 24 24 O 1.36058 * 120.73142 * 180.13132 * 23 22 21 25 25 C 1.43148 * 116.75204 * 342.68441 * 24 23 22 26 26 C 1.53469 * 108.24968 * 46.26388 * 25 24 23 27 27 O 1.36161 * 119.23602 * 180.09402 * 22 21 5 28 28 H 1.08999 * 109.47209 * 300.00114 * 1 2 3 29 29 H 1.09002 * 109.47325 * 59.99553 * 1 2 3 30 30 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.05118 * 0.03881 * 4 3 2 32 32 H 1.09003 * 109.46807 * 22.68314 * 9 8 6 33 33 H 1.09000 * 109.47086 * 142.68401 * 9 8 6 34 34 H 0.97004 * 119.99899 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.46895 * 356.19249 * 18 8 6 36 36 H 1.08997 * 109.47188 * 60.00237 * 19 18 8 37 37 H 1.09000 * 109.46948 * 180.02562 * 19 18 8 38 38 H 1.08996 * 109.47096 * 299.99820 * 19 18 8 39 39 H 1.09002 * 109.47603 * 59.99719 * 20 18 8 40 40 H 1.09000 * 109.47077 * 179.97438 * 20 18 8 41 41 H 1.08997 * 109.47317 * 299.99609 * 20 18 8 42 42 H 1.08004 * 119.96731 * 179.69218 * 21 5 4 43 43 H 1.08997 * 109.71368 * 286.57144 * 25 24 23 44 44 H 1.09004 * 109.70726 * 165.94754 * 25 24 23 45 45 H 1.08997 * 109.71869 * 180.55217 * 26 25 24 46 46 H 1.09003 * 109.71856 * 59.90846 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2920 2.3696 0.0005 5 6 1.9264 3.6141 0.0000 6 6 1.1244 4.8533 0.0011 7 8 0.2097 4.9848 0.7914 8 7 1.4061 5.8391 -0.8737 9 6 2.4471 5.6448 -1.8860 10 6 3.7361 6.2603 -1.4056 11 1 3.7758 6.7478 -0.4428 12 6 4.8647 6.2009 -2.1954 13 7 4.8162 5.6077 -3.3681 14 14 6.4623 6.9645 -1.6003 15 1 6.8782 6.3158 -0.3309 16 1 7.5175 6.7675 -2.6264 17 1 6.2610 8.4178 -1.3708 18 6 0.6713 7.1050 -0.8123 19 6 1.6377 8.2393 -0.4653 20 6 0.0229 7.3847 -2.1696 21 6 3.3212 3.6829 -0.0081 22 6 4.0724 2.5208 -0.0041 23 6 3.4384 1.2827 -0.0011 24 8 4.1625 0.1308 0.0055 25 6 5.5396 0.2332 -0.3713 26 6 6.1526 1.4300 0.3685 27 8 5.4313 2.6073 -0.0102 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2135 2.3123 0.0016 32 1 2.5948 4.5781 -2.0552 33 1 2.1417 6.1216 -2.8174 34 1 5.6103 5.5656 -3.9235 35 1 -0.1019 7.0395 -0.0468 36 1 2.4108 8.3048 -1.2308 37 1 1.0908 9.1811 -0.4192 38 1 2.0996 8.0401 0.5016 39 1 -0.6655 6.5766 -2.4168 40 1 -0.5241 8.3263 -2.1238 41 1 0.7961 7.4502 -2.9350 42 1 3.8139 4.6440 -0.0136 43 1 5.6158 0.3880 -1.4475 44 1 6.0659 -0.6799 -0.0926 45 1 7.2012 1.5361 0.0908 46 1 6.0702 1.2785 1.4448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522962915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:25 Heat of formation + Delta-G solvation = -129.664839 kcal Electronic energy + Delta-G solvation = -30923.831620 eV Core-core repulsion = 26779.462446 eV Total energy + Delta-G solvation = -4144.369175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.41924 -41.07920 -40.18754 -38.24059 -37.60426 -37.32766 -34.82404 -33.24537 -32.10304 -30.90860 -29.69945 -29.18477 -28.16420 -28.02228 -26.08397 -24.88119 -24.17330 -23.00675 -21.65998 -20.38094 -19.49837 -18.83485 -18.74203 -18.53446 -17.82870 -17.33636 -17.04186 -16.80902 -16.32196 -16.25769 -15.92266 -15.76865 -15.70597 -15.26643 -15.11878 -14.81059 -14.42614 -14.28946 -14.13948 -13.85565 -13.58745 -13.42872 -13.33739 -12.98492 -12.88156 -12.72453 -12.59369 -12.55830 -12.37636 -12.23322 -12.09112 -11.93125 -11.70104 -11.62744 -11.47886 -11.37438 -10.85327 -10.49429 -9.50149 -9.26597 -8.99532 -8.13396 -6.22015 -0.15097 0.28420 1.43997 1.46212 1.51343 1.66893 1.97200 2.05409 2.26900 2.35834 2.45909 2.67956 3.17647 3.35918 3.56508 3.77393 3.90442 4.00739 4.06726 4.15017 4.21688 4.29044 4.30177 4.39218 4.42389 4.45116 4.54928 4.60254 4.71420 4.71791 4.81069 4.86344 4.95301 5.03580 5.06517 5.13805 5.21093 5.25058 5.42722 5.45484 5.57276 5.74698 5.80001 5.87675 6.11780 6.17007 6.47453 6.54824 6.85056 7.21323 7.45379 8.92620 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009481 B = 0.006064 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.432408 B = 4616.242622 C = 6911.699157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.316 6.316 3 C 0.119 3.881 4 C -0.160 4.160 5 C -0.097 4.097 6 C 0.559 3.441 7 O -0.587 6.587 8 N -0.582 5.582 9 C 0.250 3.750 10 C -0.526 4.526 11 H 0.061 0.939 12 C 0.034 3.966 13 N -0.913 5.913 14 Si 0.939 3.061 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.270 1.270 18 C 0.129 3.871 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.106 4.106 22 C 0.073 3.927 23 C 0.028 3.972 24 O -0.306 6.306 25 C 0.015 3.985 26 C 0.009 3.991 27 O -0.318 6.318 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.155 0.845 32 H 0.022 0.978 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.154 0.846 43 H 0.072 0.928 44 H 0.164 0.836 45 H 0.151 0.849 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 -8.596 4.425 9.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.230 6.230 3 C 0.073 3.927 4 C -0.180 4.180 5 C -0.100 4.100 6 C 0.348 3.652 7 O -0.471 6.471 8 N -0.310 5.310 9 C 0.130 3.870 10 C -0.564 4.564 11 H 0.079 0.921 12 C -0.168 4.168 13 N -0.552 5.552 14 Si 0.766 3.234 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.195 1.195 18 C 0.026 3.974 19 C -0.206 4.206 20 C -0.206 4.206 21 C -0.125 4.125 22 C 0.028 3.972 23 C -0.018 4.018 24 O -0.221 6.221 25 C -0.059 4.059 26 C -0.066 4.066 27 O -0.233 6.233 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.172 0.828 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.171 0.829 43 H 0.090 0.910 44 H 0.181 0.819 45 H 0.168 0.832 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.344 -8.760 4.621 10.178 hybrid contribution 1.100 0.515 -0.086 1.218 sum -1.244 -8.245 4.536 9.492 Atomic orbital electron populations 1.23416 0.76304 1.05949 1.02175 1.86112 1.23333 1.24643 1.88945 1.17824 0.88519 0.85463 1.00921 1.20991 1.00741 0.89443 1.06832 1.19333 0.92776 0.93527 1.04368 1.18285 0.82731 0.83701 0.80474 1.90651 1.32787 1.81939 1.41680 1.48291 1.36907 1.13888 1.31959 1.19168 0.84665 0.96760 0.86428 1.21449 0.94669 1.36639 1.03675 0.92131 1.25453 1.01207 0.95338 0.94763 1.70001 1.30398 1.43590 1.11201 0.85882 0.80116 0.79274 0.78169 1.19876 1.21152 1.19497 1.21137 0.94195 0.82962 0.99105 1.22105 0.99756 0.97424 1.01354 1.22031 1.00310 1.02478 0.95827 1.21217 0.92206 0.99078 1.00037 1.18429 0.83848 0.91931 1.03030 1.18238 0.89367 0.85468 1.08745 1.86294 1.23935 1.27407 1.84458 1.23973 0.79568 1.02275 1.00098 1.24052 0.98280 0.83539 1.00705 1.86435 1.14001 1.38523 1.84332 0.91905 0.92124 0.85182 0.82799 0.96000 0.95544 0.92676 0.89678 0.91821 0.89965 0.94351 0.93073 0.89062 0.92899 0.82880 0.90964 0.81872 0.83165 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.32 -9.87 10.24 -78.94 -0.81 -10.68 16 3 C 0.12 4.28 6.69 22.53 0.15 4.43 16 4 C -0.16 -5.96 8.69 22.61 0.20 -5.76 16 5 C -0.10 -4.13 4.72 -20.11 -0.09 -4.22 16 6 C 0.56 24.88 7.20 86.72 0.62 25.50 16 7 O -0.59 -27.36 16.36 -4.00 -0.07 -27.43 16 8 N -0.58 -25.09 2.44 -805.78 -1.96 -27.05 16 9 C 0.25 12.01 4.37 85.63 0.37 12.38 16 10 C -0.53 -26.33 4.66 25.60 0.12 -26.21 16 11 H 0.06 3.06 6.84 -2.91 -0.02 3.04 16 12 C 0.03 1.73 5.46 84.66 0.46 2.19 16 13 N -0.91 -49.92 13.29 21.45 0.28 -49.64 16 14 Si 0.94 41.62 29.54 68.60 2.03 43.64 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 C 0.13 4.74 3.25 44.99 0.15 4.89 16 19 C -0.15 -5.20 8.17 71.98 0.59 -4.61 16 20 C -0.15 -4.69 9.06 71.98 0.65 -4.04 16 21 C -0.11 -4.74 7.62 22.65 0.17 -4.56 16 22 C 0.07 2.99 6.48 22.51 0.15 3.13 16 23 C 0.03 1.05 6.52 22.75 0.15 1.19 16 24 O -0.31 -9.92 10.16 -70.41 -0.72 -10.63 16 25 C 0.02 0.36 7.26 72.14 0.52 0.89 16 26 C 0.01 0.22 7.26 72.14 0.52 0.74 16 27 O -0.32 -12.13 10.41 -83.15 -0.87 -12.99 16 28 H 0.06 1.27 7.65 -2.39 -0.02 1.25 16 29 H 0.06 1.24 7.66 -2.39 -0.02 1.22 16 30 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.15 5.04 6.27 -2.91 -0.02 5.02 16 32 H 0.02 1.15 5.95 -2.39 -0.01 1.14 16 33 H 0.03 1.33 6.31 -2.39 -0.02 1.32 16 34 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 35 H 0.09 3.16 6.91 -2.38 -0.02 3.15 16 36 H 0.06 2.50 6.47 -2.39 -0.02 2.49 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.04 1.41 8.03 -2.39 -0.02 1.39 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.05 1.83 6.63 -2.39 -0.02 1.82 16 42 H 0.15 7.53 4.93 -2.91 -0.01 7.51 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.16 2.25 8.14 -2.38 -0.02 2.23 16 45 H 0.15 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.27 368.07 4.75 -62.52 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 1.01 Total: 24.88 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.85 Total: 7.39 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -1.68 Total: -76.69 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: -2.46 Total: -61.73 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -67.27 4.75 -62.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522962915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.149 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds