Wall clock time and date at job start Tue Mar 31 2020 19:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99687 * 2 1 4 4 C 1.52998 * 109.46955 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47349 * 64.99425 * 4 3 2 6 6 C 1.46494 * 120.00408 * 270.00029 * 5 4 3 7 7 C 1.50699 * 109.47631 * 264.97161 * 6 5 4 8 8 H 1.08006 * 119.99615 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00417 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00299 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99988 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47112 * 89.99887 * 11 9 7 13 13 H 1.48498 * 109.47290 * 210.00097 * 11 9 7 14 14 H 1.48507 * 109.46960 * 329.99734 * 11 9 7 15 15 C 1.34775 * 119.99387 * 90.00246 * 5 4 3 16 16 O 1.21276 * 120.00583 * 4.99929 * 15 5 4 17 17 C 1.50708 * 119.99646 * 184.99878 * 15 5 4 18 18 H 1.08995 * 109.46968 * 334.94336 * 17 15 5 19 19 C 1.53003 * 109.47109 * 214.94420 * 17 15 5 20 20 C 1.50698 * 109.47101 * 94.94214 * 17 15 5 21 21 C 1.38259 * 119.92838 * 60.02406 * 20 17 15 22 22 C 1.38236 * 120.14286 * 179.97438 * 21 20 17 23 23 C 1.38547 * 120.03183 * 0.04499 * 22 21 20 24 24 C 1.39268 * 119.82373 * 359.93462 * 23 22 21 25 25 C 1.38235 * 119.92756 * 239.99822 * 20 17 15 26 26 O 1.36503 * 108.63966 * 179.97438 * 24 23 22 27 27 C 1.43992 * 105.48233 * 17.28403 * 26 24 23 28 28 O 1.36496 * 131.53513 * 179.97438 * 23 22 21 29 29 H 1.09001 * 109.46683 * 300.00231 * 1 2 3 30 30 H 1.08992 * 109.47060 * 59.99905 * 1 2 3 31 31 H 1.08997 * 109.46978 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47432 * 59.99936 * 3 2 1 33 33 H 1.08997 * 109.46995 * 300.00052 * 3 2 1 34 34 H 1.09003 * 109.46925 * 305.00057 * 4 3 2 35 35 H 1.08997 * 109.47350 * 185.00023 * 4 3 2 36 36 H 1.09005 * 109.46769 * 24.97228 * 6 5 4 37 37 H 1.08998 * 109.47179 * 144.96662 * 6 5 4 38 38 H 0.96991 * 120.00202 * 180.02562 * 10 9 7 39 39 H 1.09000 * 109.46767 * 55.00108 * 19 17 15 40 40 H 1.08996 * 109.46998 * 175.00479 * 19 17 15 41 41 H 1.09003 * 109.46876 * 295.00517 * 19 17 15 42 42 H 1.07996 * 119.92701 * 359.97305 * 21 20 17 43 43 H 1.07996 * 119.98348 * 180.02562 * 22 21 20 44 44 H 1.07989 * 119.98513 * 0.02562 * 25 20 17 45 45 H 1.09004 * 110.57004 * 214.31936 * 27 26 24 46 46 H 1.08989 * 110.57291 * 91.44172 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1053 -0.8920 -1.3427 7 6 5.5327 -1.2875 -1.0649 8 1 6.2696 -0.5297 -0.8431 9 6 5.8977 -2.6167 -1.0930 10 7 7.1433 -2.9619 -0.8501 11 14 4.6230 -3.9275 -1.4759 12 1 4.5817 -4.1646 -2.9413 13 1 4.9853 -5.1885 -0.7804 14 1 3.2886 -3.4713 -1.0104 15 6 4.2615 1.3338 -2.3217 16 8 4.2422 2.5423 -2.2218 17 6 4.6051 0.6922 -3.6414 18 1 5.0034 -0.3072 -3.4668 19 6 5.6544 1.5405 -4.3630 20 6 3.3647 0.5971 -4.4918 21 6 2.6814 1.7457 -4.8461 22 6 1.5433 1.6636 -5.6264 23 6 1.0839 0.4287 -6.0549 24 6 1.7724 -0.7282 -5.6984 25 6 2.9127 -0.6384 -4.9164 26 8 1.1269 -1.8036 -6.2370 27 6 0.2729 -1.2647 -7.2635 28 8 0.0078 0.0783 -6.8179 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8465 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8410 35 1 3.9785 2.1766 0.0889 36 1 3.4490 -1.3611 -0.6095 37 1 3.8254 -1.2205 -2.3436 38 1 7.4001 -3.8970 -0.8702 39 1 6.5166 1.6833 -3.7116 40 1 5.9680 1.0322 -5.2748 41 1 5.2259 2.5101 -4.6165 42 1 3.0376 2.7090 -4.5124 43 1 1.0119 2.5624 -5.9020 44 1 3.4483 -1.5338 -4.6382 45 1 -0.6529 -1.8362 -7.3305 46 1 0.7880 -1.2540 -8.2238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590033202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:12 Heat of formation + Delta-G solvation = -112.254186 kcal Electronic energy + Delta-G solvation = -30582.654430 eV Core-core repulsion = 26439.040238 eV Total energy + Delta-G solvation = -4143.614192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14724 -39.80271 -37.99578 -37.31983 -36.28071 -35.04090 -33.37964 -32.52425 -30.47834 -30.04846 -28.79980 -27.57842 -26.12146 -25.81304 -24.43001 -22.95079 -22.76673 -22.47052 -21.20374 -18.57770 -17.87092 -17.44547 -17.26262 -17.04210 -16.46114 -16.29594 -15.90381 -15.68282 -15.18251 -14.94774 -14.47648 -14.41015 -14.18212 -13.83877 -13.80846 -13.54774 -13.06911 -12.97374 -12.81876 -12.63630 -12.53435 -12.20570 -11.97455 -11.78979 -11.74018 -11.52829 -11.43535 -11.27262 -10.96745 -10.80609 -10.74454 -10.64099 -10.33481 -10.19621 -9.58716 -9.48543 -9.14083 -8.74296 -8.65111 -7.94527 -7.73597 -6.18151 -4.19430 1.17018 1.29786 2.73689 3.21181 3.23924 3.31017 3.36429 3.42280 3.60812 3.86661 4.07274 4.31769 4.52534 4.57012 4.75923 4.99938 5.07298 5.15045 5.16176 5.26221 5.30896 5.36243 5.42591 5.52057 5.57171 5.58707 5.62643 5.65668 5.76455 5.83598 5.97725 6.07886 6.13532 6.17018 6.29248 6.32060 6.36652 6.46529 6.52422 6.56811 6.74833 6.86680 7.15399 7.34083 7.40455 7.50804 8.16136 8.43148 8.83572 8.92093 9.42007 10.94268 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.005089 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.987930 B = 5501.251041 C = 6072.276637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.120 3.880 5 N -0.580 5.580 6 C 0.210 3.790 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.079 3.921 10 N -0.891 5.891 11 Si 0.862 3.138 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.259 1.259 15 C 0.532 3.468 16 O -0.570 6.570 17 C -0.076 4.076 18 H 0.122 0.878 19 C -0.125 4.125 20 C -0.051 4.051 21 C -0.096 4.096 22 C -0.100 4.100 23 C 0.022 3.978 24 C 0.030 3.970 25 C -0.088 4.088 26 O -0.309 6.309 27 C 0.213 3.787 28 O -0.313 6.313 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.025 0.975 38 H 0.266 0.734 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.145 0.855 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.128 0.872 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.968 6.131 -8.649 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.308 5.308 6 C 0.089 3.911 7 C -0.580 4.580 8 H 0.096 0.904 9 C -0.125 4.125 10 N -0.529 5.529 11 Si 0.689 3.311 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.183 1.183 15 C 0.320 3.680 16 O -0.451 6.451 17 C -0.097 4.097 18 H 0.140 0.860 19 C -0.182 4.182 20 C -0.052 4.052 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.022 4.022 24 C -0.014 4.014 25 C -0.106 4.106 26 O -0.225 6.225 27 C 0.101 3.899 28 O -0.229 6.229 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.158 0.842 45 H 0.145 0.855 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.938 6.271 -8.568 16.737 hybrid contribution -0.973 -1.001 -0.285 1.424 sum -13.911 5.270 -8.853 17.310 Atomic orbital electron populations 1.22677 0.82068 1.02337 0.99324 1.88015 1.18766 1.27704 1.95247 1.23053 0.95259 0.84823 0.99885 1.21380 0.90893 1.00053 0.88068 1.47818 1.63739 1.08997 1.10289 1.19864 0.98019 0.75494 0.97684 1.21434 0.93348 0.93725 1.49496 0.90381 1.24827 0.95033 0.98242 0.94374 1.69887 1.16704 1.17722 1.48547 0.87040 0.82969 0.81917 0.79215 1.19791 1.20931 1.18311 1.20154 0.75865 0.86539 0.85411 1.90567 1.54864 1.14388 1.85267 1.20352 0.93456 1.04183 0.91692 0.85957 1.21608 0.97677 0.99138 0.99811 1.19301 0.96510 0.91827 0.97530 1.20963 0.94092 0.99458 0.96931 1.20007 0.97224 0.93984 1.00697 1.19782 0.88342 0.95065 0.99003 1.19680 0.95861 0.84488 1.01353 1.20093 0.93210 0.98868 0.98445 1.87379 1.55503 1.29205 1.50399 1.25562 0.94859 0.78523 0.90932 1.87312 1.38747 1.31234 1.65646 0.94551 0.94581 0.90005 0.93014 0.93369 0.89359 0.88971 0.93511 0.95686 0.92420 0.91621 0.92110 0.91945 0.83763 0.84926 0.84249 0.85479 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.50 9.62 -35.23 -0.34 -6.84 16 3 C 0.05 0.75 6.28 37.16 0.23 0.98 16 4 C 0.12 2.14 5.83 -4.04 -0.02 2.11 16 5 N -0.58 -11.84 2.43 -175.06 -0.43 -12.27 16 6 C 0.21 4.75 3.63 -5.20 -0.02 4.73 16 7 C -0.54 -14.19 9.36 -34.44 -0.32 -14.51 16 8 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 11 Si 0.86 20.16 27.47 -169.99 -4.67 15.49 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 15 C 0.53 10.55 6.28 -10.98 -0.07 10.48 16 16 O -0.57 -11.76 15.39 5.56 0.09 -11.67 16 17 C -0.08 -1.35 2.16 -92.92 -0.20 -1.55 16 18 H 0.12 2.39 5.53 -51.93 -0.29 2.10 16 19 C -0.12 -1.95 8.66 37.16 0.32 -1.62 16 20 C -0.05 -0.82 4.74 -104.62 -0.50 -1.32 16 21 C -0.10 -1.41 8.73 -39.57 -0.35 -1.76 16 22 C -0.10 -1.36 10.06 -39.47 -0.40 -1.76 16 23 C 0.02 0.32 7.15 -39.08 -0.28 0.04 16 24 C 0.03 0.48 7.15 -39.08 -0.28 0.20 16 25 C -0.09 -1.43 9.24 -39.47 -0.36 -1.80 16 26 O -0.31 -4.53 11.40 -45.70 -0.52 -5.05 16 27 C 0.21 2.25 8.89 101.05 0.90 3.15 16 28 O -0.31 -4.18 11.40 -45.68 -0.52 -4.70 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 35 H 0.09 1.58 7.36 -51.93 -0.38 1.20 16 36 H 0.05 1.10 6.28 -51.93 -0.33 0.77 16 37 H 0.03 0.56 5.29 -51.93 -0.27 0.28 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.91 7.09 -51.93 -0.37 0.54 16 42 H 0.14 2.06 7.04 -52.49 -0.37 1.69 16 43 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.14 2.30 7.77 -52.49 -0.41 1.90 16 45 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.08 0.67 8.14 -51.94 -0.42 0.24 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -31.67 379.19 -6.88 -38.55 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.65 Total: 4.85 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.33 Total: 0.95 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.35 Total: -37.30 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.30 Total: -28.26 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.67 -6.88 -38.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590033202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.705 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds