Wall clock time and date at job start Tue Mar 31 2020 19:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99687 * 2 1 4 4 C 1.52998 * 109.46955 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47349 * 64.99425 * 4 3 2 6 6 C 1.46494 * 120.00408 * 270.00029 * 5 4 3 7 7 C 1.50699 * 109.47631 * 264.97161 * 6 5 4 8 8 H 1.08006 * 119.99615 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00417 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00299 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99988 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47112 * 89.99887 * 11 9 7 13 13 H 1.48498 * 109.47290 * 210.00097 * 11 9 7 14 14 H 1.48507 * 109.46960 * 329.99734 * 11 9 7 15 15 C 1.34775 * 119.99387 * 90.00246 * 5 4 3 16 16 O 1.21276 * 120.00583 * 4.99929 * 15 5 4 17 17 C 1.50708 * 119.99646 * 184.99878 * 15 5 4 18 18 H 1.08995 * 109.46968 * 334.94336 * 17 15 5 19 19 C 1.53003 * 109.47109 * 214.94420 * 17 15 5 20 20 C 1.50698 * 109.47101 * 94.94214 * 17 15 5 21 21 C 1.38259 * 119.92838 * 60.02406 * 20 17 15 22 22 C 1.38236 * 120.14286 * 179.97438 * 21 20 17 23 23 C 1.38547 * 120.03183 * 0.04499 * 22 21 20 24 24 C 1.39268 * 119.82373 * 359.93462 * 23 22 21 25 25 C 1.38235 * 119.92756 * 239.99822 * 20 17 15 26 26 O 1.36503 * 108.63966 * 179.97438 * 24 23 22 27 27 C 1.43992 * 105.48233 * 17.28403 * 26 24 23 28 28 O 1.36496 * 131.53513 * 179.97438 * 23 22 21 29 29 H 1.09001 * 109.46683 * 300.00231 * 1 2 3 30 30 H 1.08992 * 109.47060 * 59.99905 * 1 2 3 31 31 H 1.08997 * 109.46978 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47432 * 59.99936 * 3 2 1 33 33 H 1.08997 * 109.46995 * 300.00052 * 3 2 1 34 34 H 1.09003 * 109.46925 * 305.00057 * 4 3 2 35 35 H 1.08997 * 109.47350 * 185.00023 * 4 3 2 36 36 H 1.09005 * 109.46769 * 24.97228 * 6 5 4 37 37 H 1.08998 * 109.47179 * 144.96662 * 6 5 4 38 38 H 0.96991 * 120.00202 * 180.02562 * 10 9 7 39 39 H 1.09000 * 109.46767 * 55.00108 * 19 17 15 40 40 H 1.08996 * 109.46998 * 175.00479 * 19 17 15 41 41 H 1.09003 * 109.46876 * 295.00517 * 19 17 15 42 42 H 1.07996 * 119.92701 * 359.97305 * 21 20 17 43 43 H 1.07996 * 119.98348 * 180.02562 * 22 21 20 44 44 H 1.07989 * 119.98513 * 0.02562 * 25 20 17 45 45 H 1.09004 * 110.57004 * 214.31936 * 27 26 24 46 46 H 1.08989 * 110.57291 * 91.44172 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1053 -0.8920 -1.3427 7 6 5.5327 -1.2875 -1.0649 8 1 6.2696 -0.5297 -0.8431 9 6 5.8977 -2.6167 -1.0930 10 7 7.1433 -2.9619 -0.8501 11 14 4.6230 -3.9275 -1.4759 12 1 4.5817 -4.1646 -2.9413 13 1 4.9853 -5.1885 -0.7804 14 1 3.2886 -3.4713 -1.0104 15 6 4.2615 1.3338 -2.3217 16 8 4.2422 2.5423 -2.2218 17 6 4.6051 0.6922 -3.6414 18 1 5.0034 -0.3072 -3.4668 19 6 5.6544 1.5405 -4.3630 20 6 3.3647 0.5971 -4.4918 21 6 2.6814 1.7457 -4.8461 22 6 1.5433 1.6636 -5.6264 23 6 1.0839 0.4287 -6.0549 24 6 1.7724 -0.7282 -5.6984 25 6 2.9127 -0.6384 -4.9164 26 8 1.1269 -1.8036 -6.2370 27 6 0.2729 -1.2647 -7.2635 28 8 0.0078 0.0783 -6.8179 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8465 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8410 35 1 3.9785 2.1766 0.0889 36 1 3.4490 -1.3611 -0.6095 37 1 3.8254 -1.2205 -2.3436 38 1 7.4001 -3.8970 -0.8702 39 1 6.5166 1.6833 -3.7116 40 1 5.9680 1.0322 -5.2748 41 1 5.2259 2.5101 -4.6165 42 1 3.0376 2.7090 -4.5124 43 1 1.0119 2.5624 -5.9020 44 1 3.4483 -1.5338 -4.6382 45 1 -0.6529 -1.8362 -7.3305 46 1 0.7880 -1.2540 -8.2238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590033202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:11 Heat of formation + Delta-G solvation = -132.199347 kcal Electronic energy + Delta-G solvation = -30583.519317 eV Core-core repulsion = 26439.040238 eV Total energy + Delta-G solvation = -4144.479079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.18165 -41.28387 -39.21291 -38.57753 -37.31113 -36.70006 -34.75704 -34.46107 -31.62045 -31.53751 -29.94207 -29.35205 -27.25884 -26.73716 -25.73664 -24.44349 -24.04904 -23.96087 -22.50712 -20.00751 -19.08652 -18.90774 -18.64777 -18.47100 -17.80166 -17.47728 -17.13580 -17.02519 -16.63823 -16.17130 -15.99974 -15.64998 -15.49320 -15.22322 -14.94017 -14.89591 -14.52923 -14.29742 -14.03746 -13.94576 -13.85556 -13.70283 -13.46102 -13.14027 -13.11177 -12.80655 -12.75090 -12.68142 -12.54196 -12.38356 -12.05574 -11.98925 -11.80833 -11.74735 -11.62733 -10.81697 -10.73207 -10.54091 -9.89546 -9.40727 -9.06123 -8.30003 -6.35663 0.01586 0.15516 1.35907 1.39552 1.49847 1.66313 1.78324 2.22998 2.33293 2.49323 2.54589 2.89974 3.04774 3.42067 3.67767 3.70099 3.81528 3.98639 4.05673 4.12592 4.15419 4.21462 4.26017 4.32449 4.37870 4.48294 4.50994 4.52535 4.54090 4.62409 4.77391 4.81318 4.85377 4.90263 4.95506 4.99463 5.03666 5.05376 5.15744 5.27370 5.35631 5.47049 5.50329 5.70667 6.08059 6.19572 6.26490 6.61436 6.71469 7.24289 7.34573 8.85956 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.005089 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.987930 B = 5501.251041 C = 6072.276637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.057 3.943 4 C 0.112 3.888 5 N -0.589 5.589 6 C 0.228 3.772 7 C -0.537 4.537 8 H 0.036 0.964 9 C 0.028 3.972 10 N -0.937 5.937 11 Si 0.924 3.076 12 H -0.260 1.260 13 H -0.282 1.282 14 H -0.247 1.247 15 C 0.528 3.472 16 O -0.579 6.579 17 C -0.073 4.073 18 H 0.098 0.902 19 C -0.121 4.121 20 C -0.060 4.060 21 C -0.094 4.094 22 C -0.092 4.092 23 C 0.023 3.977 24 C 0.021 3.979 25 C -0.103 4.103 26 O -0.327 6.327 27 C 0.204 3.796 28 O -0.318 6.318 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.043 0.957 37 H 0.034 0.966 38 H 0.268 0.732 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.149 0.851 43 H 0.162 0.838 44 H 0.129 0.871 45 H 0.163 0.837 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.900 6.440 -10.018 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.020 4.020 4 C -0.011 4.011 5 N -0.317 5.317 6 C 0.106 3.894 7 C -0.575 4.575 8 H 0.054 0.946 9 C -0.171 4.171 10 N -0.577 5.577 11 Si 0.747 3.253 12 H -0.184 1.184 13 H -0.208 1.208 14 H -0.171 1.171 15 C 0.317 3.683 16 O -0.461 6.461 17 C -0.094 4.094 18 H 0.116 0.884 19 C -0.178 4.178 20 C -0.061 4.061 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.022 4.022 24 C -0.023 4.023 25 C -0.122 4.122 26 O -0.244 6.244 27 C 0.093 3.907 28 O -0.235 6.235 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.166 0.834 43 H 0.180 0.820 44 H 0.146 0.854 45 H 0.180 0.820 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.894 6.600 -9.944 19.876 hybrid contribution -0.075 -1.045 0.119 1.055 sum -15.969 5.555 -9.825 19.555 Atomic orbital electron populations 1.22861 0.79992 1.03327 1.00615 1.87957 1.21117 1.28404 1.95511 1.22930 0.93240 0.84738 1.01086 1.21555 0.93002 0.99766 0.86769 1.47872 1.64170 1.08209 1.11491 1.19513 0.95215 0.76996 0.97698 1.21537 0.94427 0.92896 1.48660 0.94592 1.25598 0.96828 1.00493 0.94202 1.70024 1.18903 1.18362 1.50382 0.86050 0.80693 0.78853 0.79667 1.18445 1.20799 1.17084 1.20525 0.75320 0.86513 0.85935 1.90545 1.55332 1.14634 1.85571 1.20280 0.94914 1.02880 0.91359 0.88382 1.21605 0.96539 0.99683 0.99989 1.19139 0.96263 0.92549 0.98115 1.20995 0.94353 0.98905 0.96945 1.20263 0.96550 0.94819 0.99396 1.19944 0.88426 0.94998 0.98802 1.19748 0.95802 0.85429 1.01365 1.20026 0.94041 0.98554 0.99585 1.87349 1.55957 1.29600 1.51496 1.26149 0.96258 0.77565 0.90687 1.87300 1.38231 1.32553 1.65414 0.92271 0.94199 0.89270 0.89855 0.93889 0.90204 0.88594 0.93928 0.94856 0.92261 0.93212 0.90221 0.90725 0.83364 0.82019 0.85354 0.82020 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -13.49 9.62 -148.98 -1.43 -14.93 16 3 C 0.06 1.72 6.28 71.98 0.45 2.18 16 4 C 0.11 4.01 5.83 86.38 0.50 4.51 16 5 N -0.59 -24.40 2.43 -826.16 -2.01 -26.41 16 6 C 0.23 10.42 3.63 85.63 0.31 10.73 16 7 C -0.54 -29.14 9.36 25.60 0.24 -28.90 16 8 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 9 C 0.03 1.56 5.47 84.65 0.46 2.02 16 10 N -0.94 -55.96 13.96 21.45 0.30 -55.66 16 11 Si 0.92 41.82 27.47 68.60 1.88 43.71 16 12 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 15 C 0.53 21.16 6.28 87.66 0.55 21.71 16 16 O -0.58 -23.83 15.39 -3.02 -0.05 -23.88 16 17 C -0.07 -2.64 2.16 -12.28 -0.03 -2.66 16 18 H 0.10 3.98 5.53 -2.39 -0.01 3.97 16 19 C -0.12 -3.77 8.66 71.98 0.62 -3.15 16 20 C -0.06 -1.91 4.74 -19.86 -0.09 -2.00 16 21 C -0.09 -2.59 8.73 22.27 0.19 -2.40 16 22 C -0.09 -2.25 10.06 22.34 0.22 -2.02 16 23 C 0.02 0.61 7.15 22.59 0.16 0.77 16 24 C 0.02 0.63 7.15 22.59 0.16 0.79 16 25 C -0.10 -3.35 9.24 22.34 0.21 -3.14 16 26 O -0.33 -8.99 11.40 -76.09 -0.87 -9.85 16 27 C 0.20 3.68 8.89 113.37 1.01 4.68 16 28 O -0.32 -7.54 11.40 -76.00 -0.87 -8.41 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 2.94 8.07 -2.39 -0.02 2.92 16 35 H 0.10 3.30 7.36 -2.39 -0.02 3.29 16 36 H 0.04 2.00 6.28 -2.38 -0.01 1.99 16 37 H 0.03 1.49 5.29 -2.39 -0.01 1.48 16 38 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.13 7.09 -2.39 -0.02 2.11 16 42 H 0.15 3.97 7.04 -2.91 -0.02 3.95 16 43 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 44 H 0.13 4.32 7.77 -2.92 -0.02 4.30 16 45 H 0.16 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -69.58 379.19 4.12 -65.45 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.93 Total: 24.94 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 6.23 Total: 5.04 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -1.71 Total: -82.07 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -3.21 Total: -57.07 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.71 kcal Total: -69.58 4.12 -65.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590033202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.745 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds