Wall clock time and date at job start Tue Mar 31 2020 19:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99591 * 2 1 4 4 C 1.53006 * 109.46859 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46962 * 66.86610 * 4 3 2 6 6 C 1.46500 * 119.99550 * 272.10461 * 5 4 3 7 7 C 1.50700 * 109.47018 * 90.00714 * 6 5 4 8 8 H 1.08001 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00326 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99455 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00258 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47380 * 89.99584 * 11 9 7 13 13 H 1.48502 * 109.47092 * 209.99986 * 11 9 7 14 14 H 1.48500 * 109.47285 * 329.99489 * 11 9 7 15 15 C 1.34771 * 119.99869 * 92.10755 * 5 4 3 16 16 O 1.21281 * 119.99593 * 184.85515 * 15 5 4 17 17 C 1.50693 * 120.00356 * 4.85997 * 15 5 4 18 18 H 1.09001 * 109.71156 * 201.94111 * 17 15 5 19 19 O 1.43188 * 109.71138 * 322.57445 * 17 15 5 20 20 C 1.36110 * 116.69036 * 165.95415 * 19 17 15 21 21 C 1.38697 * 119.38818 * 162.80634 * 20 19 17 22 22 C 1.38193 * 120.06410 * 179.82993 * 21 20 19 23 23 C 1.38256 * 120.11335 * 359.97438 * 22 21 20 24 24 C 1.38192 * 120.11388 * 0.07855 * 23 22 21 25 25 C 1.38705 * 120.06665 * 359.97238 * 24 23 22 26 26 O 1.36113 * 119.39847 * 179.86433 * 25 24 23 27 27 C 1.43169 * 116.71985 * 162.93993 * 26 25 24 28 28 H 1.08999 * 109.74771 * 286.42603 * 27 26 25 29 29 C 1.53001 * 109.70977 * 165.81828 * 27 26 25 30 30 H 1.09001 * 109.46742 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46924 * 299.99482 * 1 2 3 32 32 H 1.08995 * 109.47294 * 59.99836 * 1 2 3 33 33 H 1.08994 * 109.47486 * 300.00202 * 3 2 1 34 34 H 1.09004 * 109.47080 * 60.00608 * 3 2 1 35 35 H 1.08999 * 109.46936 * 186.86739 * 4 3 2 36 36 H 1.09004 * 109.46820 * 306.86482 * 4 3 2 37 37 H 1.09003 * 109.47173 * 209.99766 * 6 5 4 38 38 H 1.08997 * 109.47524 * 330.00194 * 6 5 4 39 39 H 0.97009 * 119.99663 * 179.97438 * 10 9 7 40 40 H 1.07996 * 119.96772 * 359.86162 * 21 20 19 41 41 H 1.08004 * 119.94379 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.94172 * 180.02562 * 23 22 21 43 43 H 1.07997 * 119.96520 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.46932 * 305.82286 * 29 27 26 45 45 H 1.09003 * 109.46606 * 65.81661 * 29 27 26 46 46 H 1.08995 * 109.47504 * 185.81661 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9789 0.6055 -1.2711 6 6 4.0644 -0.8492 -1.4225 7 6 2.7483 -1.3797 -1.9298 8 1 1.9298 -0.7012 -2.1199 9 6 2.5889 -2.7312 -2.1512 10 7 3.5858 -3.5573 -1.9201 11 14 0.9573 -3.3888 -2.7792 12 1 0.9662 -3.3991 -4.2641 13 1 0.7539 -4.7710 -2.2758 14 1 -0.1456 -2.5192 -2.2969 15 6 4.3081 1.4108 -2.3004 16 8 4.5902 0.9322 -3.3785 17 6 4.3258 2.9057 -2.1118 18 1 4.2236 3.3995 -3.0781 19 8 3.2493 3.2969 -1.2525 20 6 3.2981 4.5599 -0.7475 21 6 2.1481 5.1260 -0.2177 22 6 2.1826 6.4061 0.3018 23 6 3.3631 7.1256 0.2956 24 6 4.5123 6.5679 -0.2318 25 6 4.4843 5.2839 -0.7558 26 8 5.6234 4.7489 -1.2743 27 6 5.6453 3.3282 -1.4502 28 1 5.7445 2.8386 -0.4815 29 6 6.8206 2.9376 -2.3485 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.6885 1.8465 -0.8899 34 1 1.6886 1.8464 0.8901 35 1 3.9782 2.1732 0.1222 36 1 3.8493 0.5413 0.8213 37 1 4.8533 -1.0947 -2.1336 38 1 4.2912 -1.3023 -0.4575 39 1 3.4736 -4.5083 -2.0755 40 1 1.2248 4.5657 -0.2108 41 1 1.2860 6.8448 0.7143 42 1 3.3870 8.1257 0.7027 43 1 5.4330 7.1322 -0.2358 44 1 6.7676 3.4994 -3.2810 45 1 7.7576 3.1650 -1.8401 46 1 6.7740 1.8702 -2.5642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591169254.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:55 Heat of formation + Delta-G solvation = -124.156406 kcal Electronic energy + Delta-G solvation = -31258.785310 eV Core-core repulsion = 27114.654999 eV Total energy + Delta-G solvation = -4144.130311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.79190 -40.71252 -38.80545 -38.55583 -38.36324 -36.55823 -34.70449 -33.91745 -31.71704 -31.05387 -30.07669 -29.51064 -27.97543 -26.99743 -25.15250 -24.51657 -24.01276 -23.53070 -22.05694 -20.70779 -19.89395 -18.68794 -18.65282 -18.27727 -17.44345 -17.07009 -16.97672 -16.66803 -16.40272 -16.19565 -15.93693 -15.80530 -15.51490 -15.40178 -15.22926 -14.79827 -14.61326 -14.26300 -14.18125 -13.83979 -13.63381 -13.40049 -13.20818 -13.16889 -12.90579 -12.77881 -12.72317 -12.65505 -12.58362 -12.23754 -12.08204 -11.98528 -11.88021 -11.55351 -11.38934 -10.84208 -10.51495 -10.29663 -9.61705 -9.53443 -9.08867 -8.08881 -6.12546 0.32667 0.35037 1.21134 1.37761 1.40320 1.49618 1.87019 1.99771 2.22588 2.48663 2.77873 2.96659 3.06875 3.23260 3.31466 3.52817 3.58270 3.83646 4.05412 4.16696 4.24692 4.27583 4.33135 4.40375 4.45573 4.49900 4.55253 4.61185 4.61917 4.62813 4.69236 4.90000 4.90886 4.96465 5.03914 5.07340 5.22355 5.25763 5.27179 5.56353 5.60858 5.72777 5.83273 5.88907 6.20688 6.34237 6.47421 6.62740 6.89198 7.13059 7.51214 9.00576 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016003 B = 0.004275 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.254674 B = 6547.856099 C = 7785.933184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.058 3.942 4 C 0.115 3.885 5 N -0.576 5.576 6 C 0.265 3.735 7 C -0.482 4.482 8 H 0.057 0.943 9 C 0.002 3.998 10 N -0.940 5.940 11 Si 0.952 3.048 12 H -0.287 1.287 13 H -0.282 1.282 14 H -0.260 1.260 15 C 0.520 3.480 16 O -0.568 6.568 17 C 0.050 3.950 18 H 0.107 0.893 19 O -0.299 6.299 20 C 0.021 3.979 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.108 4.108 24 C -0.119 4.119 25 C 0.028 3.972 26 O -0.304 6.304 27 C 0.072 3.928 28 H 0.094 0.906 29 C -0.143 4.143 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.002 0.998 38 H 0.021 0.979 39 H 0.260 0.740 40 H 0.139 0.861 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.148 0.852 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 23.401 8.871 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.019 4.019 4 C -0.007 4.007 5 N -0.306 5.306 6 C 0.145 3.855 7 C -0.521 4.521 8 H 0.075 0.925 9 C -0.194 4.194 10 N -0.582 5.582 11 Si 0.778 3.222 12 H -0.213 1.213 13 H -0.208 1.208 14 H -0.184 1.184 15 C 0.306 3.694 16 O -0.449 6.449 17 C -0.010 4.010 18 H 0.125 0.875 19 O -0.214 6.214 20 C -0.023 4.023 21 C -0.137 4.137 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.016 4.016 26 O -0.219 6.219 27 C 0.015 3.985 28 H 0.112 0.888 29 C -0.200 4.200 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.020 0.980 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.157 0.843 41 H 0.179 0.821 42 H 0.182 0.818 43 H 0.166 0.834 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.079 22.728 8.314 24.225 hybrid contribution -0.845 -1.057 -0.775 1.560 sum -1.924 21.670 7.540 23.025 Atomic orbital electron populations 1.22683 0.81679 1.02074 0.99881 1.88292 1.19484 1.27478 1.95124 1.22904 0.93512 0.84985 1.00480 1.21928 0.94127 0.99503 0.85169 1.48167 1.61746 1.07885 1.12795 1.18846 0.96464 0.74518 0.95714 1.21458 0.97834 0.92139 1.40710 0.92482 1.25641 0.99840 0.97280 0.96665 1.70051 1.32991 1.03461 1.51716 0.85641 0.80921 0.77673 0.77923 1.21327 1.20773 1.18422 1.19977 0.78007 0.87381 0.84046 1.90723 1.51560 1.76223 1.26349 1.23338 0.89251 0.92968 0.95480 0.87487 1.86624 1.45660 1.27661 1.61468 1.19324 0.94723 0.85803 1.02411 1.20735 0.95689 0.96385 1.00845 1.21322 0.99817 0.92600 0.99104 1.21342 0.91095 1.01362 0.98743 1.20766 1.01295 0.92326 0.99405 1.19314 0.84655 0.96004 1.01660 1.86320 1.34511 1.21610 1.79437 1.22984 0.94577 0.80251 1.00658 0.88839 1.21793 0.96602 1.01936 0.99708 0.91201 0.92061 0.95135 0.93732 0.90773 0.87169 0.90379 0.97973 0.96059 0.93135 0.84270 0.82093 0.81829 0.83444 0.90456 0.88351 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 11.01 113.37 1.25 2.33 16 2 O -0.39 -15.49 7.45 -148.98 -1.11 -16.60 16 3 C 0.06 1.93 5.51 71.98 0.40 2.33 16 4 C 0.12 3.93 5.34 86.38 0.46 4.39 16 5 N -0.58 -24.98 2.45 -826.15 -2.02 -27.00 16 6 C 0.27 14.38 5.05 85.63 0.43 14.81 16 7 C -0.48 -27.92 7.52 25.60 0.19 -27.73 16 8 H 0.06 3.34 6.75 -2.91 -0.02 3.32 16 9 C 0.00 0.12 5.46 84.66 0.46 0.58 16 10 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 11 Si 0.95 46.54 29.54 68.60 2.03 48.56 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 14 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 15 C 0.52 21.96 5.84 87.66 0.51 22.47 16 16 O -0.57 -29.01 16.27 -3.03 -0.05 -29.06 16 17 C 0.05 1.60 2.66 30.02 0.08 1.68 16 18 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 19 O -0.30 -8.75 4.61 -82.59 -0.38 -9.13 16 20 C 0.02 0.53 6.34 22.56 0.14 0.67 16 21 C -0.12 -2.26 9.96 22.37 0.22 -2.04 16 22 C -0.11 -1.49 10.04 22.26 0.22 -1.27 16 23 C -0.11 -1.37 10.04 22.26 0.22 -1.15 16 24 C -0.12 -2.08 9.96 22.37 0.22 -1.86 16 25 C 0.03 0.66 6.49 22.56 0.15 0.81 16 26 O -0.30 -7.72 10.07 -82.62 -0.83 -8.55 16 27 C 0.07 1.94 2.97 30.77 0.09 2.03 16 28 H 0.09 2.42 6.96 -2.39 -0.02 2.40 16 29 C -0.14 -3.61 9.44 71.98 0.68 -2.93 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 1.56 6.64 -2.39 -0.02 1.54 16 34 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.11 3.18 4.08 -2.39 -0.01 3.17 16 36 H 0.08 2.65 7.92 -2.38 -0.02 2.63 16 37 H 0.00 0.14 7.49 -2.39 -0.02 0.12 16 38 H 0.02 1.20 7.91 -2.39 -0.02 1.18 16 39 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 43 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 2.07 6.80 -2.39 -0.02 2.05 16 Total: -1.00 -75.05 370.73 4.64 -70.40 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.99 Total: 14.11 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.74 Total: 15.13 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.74 Total: -84.87 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -2.37 Total: -63.34 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -75.05 4.64 -70.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169254.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.752 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds