Wall clock time and date at job start Tue Mar 31 2020 19:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00119 * 2 1 4 4 C 1.53002 * 109.47135 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46914 * 65.00671 * 4 3 2 6 6 C 1.46506 * 119.99533 * 269.99593 * 5 4 3 7 7 C 1.50697 * 109.47105 * 265.11165 * 6 5 4 8 8 H 1.07999 * 119.99590 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99898 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00091 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46890 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46890 * 119.99662 * 11 9 7 14 14 H 1.48492 * 109.47084 * 239.99951 * 11 9 7 15 15 C 1.34767 * 120.00226 * 89.99642 * 5 4 3 16 16 O 1.21285 * 120.00180 * 5.84980 * 15 5 4 17 17 C 1.50705 * 120.00088 * 185.84699 * 15 5 4 18 18 H 1.09001 * 109.69674 * 333.50743 * 17 15 5 19 19 O 1.43167 * 109.73874 * 212.91138 * 17 15 5 20 20 C 1.36102 * 116.71855 * 286.46211 * 19 17 15 21 21 C 1.38701 * 119.40746 * 162.97671 * 20 19 17 22 22 C 1.38188 * 120.07319 * 179.91215 * 21 20 19 23 23 C 1.38262 * 120.10858 * 359.44871 * 22 21 20 24 24 C 1.38195 * 120.11347 * 0.63001 * 23 22 21 25 25 C 1.38700 * 120.06183 * 359.69198 * 24 23 22 26 26 O 1.36109 * 119.38901 * 179.83516 * 25 24 23 27 27 C 1.43179 * 116.69082 * 162.68674 * 26 25 24 28 28 H 1.09001 * 109.71216 * 286.59689 * 27 26 25 29 29 C 1.52997 * 109.71327 * 165.96877 * 27 26 25 30 30 H 1.09005 * 109.46890 * 59.99535 * 1 2 3 31 31 H 1.08999 * 109.46833 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46960 * 299.99944 * 1 2 3 33 33 H 1.08998 * 109.47023 * 60.00184 * 3 2 1 34 34 H 1.09001 * 109.47330 * 300.00690 * 3 2 1 35 35 H 1.08993 * 109.47013 * 305.00474 * 4 3 2 36 36 H 1.08999 * 109.46621 * 185.00029 * 4 3 2 37 37 H 1.09006 * 109.47101 * 25.11219 * 6 5 4 38 38 H 1.08993 * 109.46587 * 145.10940 * 6 5 4 39 39 H 0.96997 * 120.00177 * 180.02562 * 10 9 7 40 40 H 1.08008 * 119.96382 * 359.63931 * 21 20 19 41 41 H 1.08000 * 119.94556 * 179.71299 * 22 21 20 42 42 H 1.07999 * 119.93989 * 180.34251 * 23 22 21 43 43 H 1.07999 * 119.96499 * 179.72602 * 24 23 22 44 44 H 1.09004 * 109.46881 * 54.92554 * 29 27 26 45 45 H 1.09002 * 109.47603 * 174.92973 * 29 27 26 46 46 H 1.09001 * 109.47151 * 294.93105 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2529 6 6 4.1052 -0.8920 -1.3430 7 6 5.5319 -1.2878 -1.0620 8 1 6.2683 -0.5301 -0.8382 9 6 5.8969 -2.6170 -1.0905 10 7 5.0000 -3.5396 -1.3625 11 14 7.6653 -3.1077 -0.7415 12 1 8.4711 -1.8913 -0.4651 13 1 7.7054 -4.0075 0.4391 14 1 8.2251 -3.8141 -1.9216 15 6 4.2614 1.3339 -2.3218 16 8 4.2572 2.5423 -2.2179 17 6 4.5862 0.6927 -3.6465 18 1 4.9984 -0.3028 -3.4815 19 8 5.5361 1.4976 -4.3532 20 6 5.0731 2.6574 -4.8944 21 6 5.9755 3.6404 -5.2728 22 6 5.5206 4.8225 -5.8252 23 6 4.1657 5.0241 -6.0129 24 6 3.2610 4.0496 -5.6365 25 6 3.7107 2.8636 -5.0753 26 8 2.8075 1.9145 -4.7066 27 6 3.3136 0.5915 -4.4982 28 1 3.5495 0.1326 -5.4584 29 6 2.2681 -0.2517 -3.7656 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.8515 0.5682 0.8408 36 1 3.9785 2.1765 0.0889 37 1 3.4472 -1.3612 -0.6115 38 1 3.8276 -1.2201 -2.3446 39 1 5.2568 -4.4747 -1.3822 40 1 7.0348 3.4835 -5.1314 41 1 6.2248 5.5884 -6.1149 42 1 3.8135 5.9468 -6.4500 43 1 2.2029 4.2115 -5.7801 44 1 1.3297 -0.2289 -4.3199 45 1 2.6198 -1.2805 -3.6887 46 1 2.1097 0.1538 -2.7663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591169257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:58 Heat of formation + Delta-G solvation = -115.465118 kcal Electronic energy + Delta-G solvation = -31286.562828 eV Core-core repulsion = 27142.809399 eV Total energy + Delta-G solvation = -4143.753428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38108 -39.07095 -37.61077 -37.22379 -36.79635 -35.08005 -32.76479 -32.64579 -30.50558 -29.84504 -28.81660 -27.28347 -26.86656 -25.80628 -23.52250 -23.04942 -22.78684 -22.38697 -20.74243 -18.61149 -18.36398 -17.50943 -16.69502 -16.51565 -16.30327 -15.99508 -15.68935 -15.26177 -15.01467 -14.73521 -14.55975 -14.48907 -14.30136 -13.67797 -13.59022 -13.48671 -13.34489 -12.76230 -12.51619 -12.27627 -12.17684 -11.99997 -11.85774 -11.73023 -11.62614 -11.55725 -11.36109 -11.26155 -10.96641 -10.92475 -10.78983 -10.55795 -10.18239 -9.99690 -9.72049 -9.46152 -9.18422 -8.58404 -8.35871 -7.80038 -7.66605 -6.21679 -4.29433 1.55288 1.60500 2.98469 3.20950 3.22208 3.30051 3.35400 3.63148 3.77353 4.01957 4.09283 4.32091 4.49929 4.91281 4.95184 5.06415 5.11924 5.17230 5.32207 5.34834 5.44276 5.44891 5.50092 5.59216 5.60441 5.63318 5.64719 5.79093 5.81146 5.86016 5.97394 6.01753 6.12772 6.29357 6.33583 6.39963 6.48965 6.65800 6.72754 6.87361 7.14883 7.23585 7.40781 7.48866 7.72280 7.75309 8.02129 8.20450 8.70693 8.87308 9.38995 10.84456 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.005116 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.193626 B = 5471.562659 C = 7060.405548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.581 5.581 6 C 0.230 3.770 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.068 3.932 10 N -0.888 5.888 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.506 3.494 16 O -0.553 6.553 17 C 0.035 3.965 18 H 0.168 0.832 19 O -0.285 6.285 20 C 0.072 3.928 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.121 4.121 25 C 0.072 3.928 26 O -0.303 6.303 27 C 0.067 3.933 28 H 0.091 0.909 29 C -0.153 4.153 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.265 0.735 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 9.383 -5.383 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.312 5.312 6 C 0.111 3.889 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.208 1.208 15 C 0.292 3.708 16 O -0.433 6.433 17 C -0.025 4.025 18 H 0.185 0.815 19 O -0.198 6.198 20 C 0.026 3.974 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.140 4.140 25 C 0.027 3.973 26 O -0.218 6.218 27 C 0.010 3.990 28 H 0.109 0.891 29 C -0.210 4.210 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.088 0.912 45 H 0.116 0.884 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.501 9.551 -5.302 12.712 hybrid contribution 0.763 -0.421 0.444 0.977 sum -5.738 9.130 -4.858 11.828 Atomic orbital electron populations 1.22691 0.82085 1.02431 0.99259 1.88045 1.18716 1.27326 1.95217 1.23028 0.95119 0.85002 0.99883 1.21367 0.91094 0.99859 0.87984 1.48139 1.63381 1.09983 1.09678 1.19731 0.97454 0.72575 0.99183 1.21613 0.94769 0.92570 1.49454 0.92053 1.24911 0.97725 0.96241 0.94674 1.69925 1.33543 1.01020 1.48076 0.86484 0.84537 0.78690 0.78088 1.19636 1.20819 1.20751 1.20439 0.77215 0.87101 0.86034 1.90642 1.53470 1.14177 1.84978 1.23512 0.91570 0.97563 0.89855 0.81531 1.86439 1.36287 1.30450 1.66584 1.18903 0.91675 0.88602 0.98192 1.20375 0.99233 0.91743 1.02156 1.20776 0.95664 0.96586 1.01129 1.20760 0.92882 0.98730 1.01935 1.20318 1.00314 0.92266 1.01094 1.18828 0.87523 0.91425 0.99518 1.86269 1.33976 1.17622 1.83948 1.23061 0.94393 0.82331 0.99213 0.89138 1.22057 0.97700 0.99879 1.01345 0.94591 0.89790 0.94702 0.93078 0.93396 0.89281 0.89348 0.92741 0.94302 0.92523 0.85238 0.85643 0.85701 0.85463 0.91230 0.88436 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.30 9.62 -35.23 -0.34 -6.64 16 3 C 0.05 0.76 6.28 37.16 0.23 0.99 16 4 C 0.12 2.21 5.84 -4.04 -0.02 2.18 16 5 N -0.58 -12.06 1.79 -175.05 -0.31 -12.37 16 6 C 0.23 5.23 3.92 -5.19 -0.02 5.21 16 7 C -0.55 -13.91 8.85 -34.44 -0.30 -14.22 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -23.60 13.29 55.43 0.74 -22.86 16 11 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.51 10.85 5.53 -10.99 -0.06 10.79 16 16 O -0.55 -12.92 14.42 -13.39 -0.19 -13.11 16 17 C 0.03 0.69 2.88 -27.64 -0.08 0.61 16 18 H 0.17 3.45 5.89 -51.93 -0.31 3.14 16 19 O -0.28 -5.81 10.11 -45.73 -0.46 -6.28 16 20 C 0.07 1.35 5.37 -39.14 -0.21 1.14 16 21 C -0.12 -1.88 9.96 -39.43 -0.39 -2.27 16 22 C -0.12 -1.66 10.04 -39.59 -0.40 -2.05 16 23 C -0.12 -1.64 10.04 -39.59 -0.40 -2.04 16 24 C -0.12 -1.85 9.96 -39.43 -0.39 -2.24 16 25 C 0.07 1.31 5.67 -39.14 -0.22 1.09 16 26 O -0.30 -5.57 9.66 -35.29 -0.34 -5.91 16 27 C 0.07 1.15 3.34 -26.49 -0.09 1.07 16 28 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 29 C -0.15 -2.43 8.19 37.16 0.30 -2.12 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 36 H 0.09 1.60 7.35 -51.93 -0.38 1.22 16 37 H 0.05 1.34 7.22 -51.93 -0.37 0.97 16 38 H 0.04 0.88 3.75 -51.93 -0.19 0.68 16 39 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 1.55 6.78 -51.93 -0.35 1.19 16 46 H 0.08 1.39 6.09 -51.93 -0.32 1.08 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -30.66 372.60 -7.90 -38.56 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.54 Total: 6.31 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.04 Total: 1.32 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.42 Total: -35.24 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.34 Total: -31.94 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.66 -7.90 -38.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.905 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds