Wall clock time and date at job start Tue Mar 31 2020 19:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00119 * 2 1 4 4 C 1.53002 * 109.47135 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46914 * 65.00671 * 4 3 2 6 6 C 1.46506 * 119.99533 * 269.99593 * 5 4 3 7 7 C 1.50697 * 109.47105 * 265.11165 * 6 5 4 8 8 H 1.07999 * 119.99590 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99898 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00091 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46890 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46890 * 119.99662 * 11 9 7 14 14 H 1.48492 * 109.47084 * 239.99951 * 11 9 7 15 15 C 1.34767 * 120.00226 * 89.99642 * 5 4 3 16 16 O 1.21285 * 120.00180 * 5.84980 * 15 5 4 17 17 C 1.50705 * 120.00088 * 185.84699 * 15 5 4 18 18 H 1.09001 * 109.69674 * 333.50743 * 17 15 5 19 19 O 1.43167 * 109.73874 * 212.91138 * 17 15 5 20 20 C 1.36102 * 116.71855 * 286.46211 * 19 17 15 21 21 C 1.38701 * 119.40746 * 162.97671 * 20 19 17 22 22 C 1.38188 * 120.07319 * 179.91215 * 21 20 19 23 23 C 1.38262 * 120.10858 * 359.44871 * 22 21 20 24 24 C 1.38195 * 120.11347 * 0.63001 * 23 22 21 25 25 C 1.38700 * 120.06183 * 359.69198 * 24 23 22 26 26 O 1.36109 * 119.38901 * 179.83516 * 25 24 23 27 27 C 1.43179 * 116.69082 * 162.68674 * 26 25 24 28 28 H 1.09001 * 109.71216 * 286.59689 * 27 26 25 29 29 C 1.52997 * 109.71327 * 165.96877 * 27 26 25 30 30 H 1.09005 * 109.46890 * 59.99535 * 1 2 3 31 31 H 1.08999 * 109.46833 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46960 * 299.99944 * 1 2 3 33 33 H 1.08998 * 109.47023 * 60.00184 * 3 2 1 34 34 H 1.09001 * 109.47330 * 300.00690 * 3 2 1 35 35 H 1.08993 * 109.47013 * 305.00474 * 4 3 2 36 36 H 1.08999 * 109.46621 * 185.00029 * 4 3 2 37 37 H 1.09006 * 109.47101 * 25.11219 * 6 5 4 38 38 H 1.08993 * 109.46587 * 145.10940 * 6 5 4 39 39 H 0.96997 * 120.00177 * 180.02562 * 10 9 7 40 40 H 1.08008 * 119.96382 * 359.63931 * 21 20 19 41 41 H 1.08000 * 119.94556 * 179.71299 * 22 21 20 42 42 H 1.07999 * 119.93989 * 180.34251 * 23 22 21 43 43 H 1.07999 * 119.96499 * 179.72602 * 24 23 22 44 44 H 1.09004 * 109.46881 * 54.92554 * 29 27 26 45 45 H 1.09002 * 109.47603 * 174.92973 * 29 27 26 46 46 H 1.09001 * 109.47151 * 294.93105 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2529 6 6 4.1052 -0.8920 -1.3430 7 6 5.5319 -1.2878 -1.0620 8 1 6.2683 -0.5301 -0.8382 9 6 5.8969 -2.6170 -1.0905 10 7 5.0000 -3.5396 -1.3625 11 14 7.6653 -3.1077 -0.7415 12 1 8.4711 -1.8913 -0.4651 13 1 7.7054 -4.0075 0.4391 14 1 8.2251 -3.8141 -1.9216 15 6 4.2614 1.3339 -2.3218 16 8 4.2572 2.5423 -2.2179 17 6 4.5862 0.6927 -3.6465 18 1 4.9984 -0.3028 -3.4815 19 8 5.5361 1.4976 -4.3532 20 6 5.0731 2.6574 -4.8944 21 6 5.9755 3.6404 -5.2728 22 6 5.5206 4.8225 -5.8252 23 6 4.1657 5.0241 -6.0129 24 6 3.2610 4.0496 -5.6365 25 6 3.7107 2.8636 -5.0753 26 8 2.8075 1.9145 -4.7066 27 6 3.3136 0.5915 -4.4982 28 1 3.5495 0.1326 -5.4584 29 6 2.2681 -0.2517 -3.7656 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.8515 0.5682 0.8408 36 1 3.9785 2.1765 0.0889 37 1 3.4472 -1.3612 -0.6115 38 1 3.8276 -1.2201 -2.3446 39 1 5.2568 -4.4747 -1.3822 40 1 7.0348 3.4835 -5.1314 41 1 6.2248 5.5884 -6.1149 42 1 3.8135 5.9468 -6.4500 43 1 2.2029 4.2115 -5.7801 44 1 1.3297 -0.2289 -4.3199 45 1 2.6198 -1.2805 -3.6887 46 1 2.1097 0.1538 -2.7663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591169257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:57 Heat of formation + Delta-G solvation = -132.819165 kcal Electronic energy + Delta-G solvation = -31287.315356 eV Core-core repulsion = 27142.809399 eV Total energy + Delta-G solvation = -4144.505956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.78604 -40.58246 -38.85070 -38.53856 -38.18381 -36.79791 -34.62558 -34.06174 -31.76081 -31.26195 -30.04379 -29.06978 -28.25840 -27.03254 -24.93722 -24.81737 -24.16820 -23.59324 -22.13746 -19.99031 -19.81053 -19.07330 -18.44382 -18.05853 -17.69612 -17.41061 -17.03478 -16.60883 -16.52557 -16.23789 -15.91247 -15.79403 -15.69817 -15.15596 -14.90083 -14.82249 -14.76485 -14.39565 -13.96137 -13.76968 -13.58155 -13.51876 -13.33531 -13.09635 -12.93688 -12.82584 -12.78328 -12.72351 -12.60092 -12.42919 -12.15841 -12.06050 -11.91396 -11.64333 -11.34439 -10.88943 -10.63297 -10.51338 -9.58721 -9.52187 -8.95993 -8.21119 -6.35262 0.35717 0.41101 1.37241 1.38586 1.43505 1.52925 1.85150 2.19468 2.28855 2.41647 2.82037 2.89870 3.09163 3.10052 3.41540 3.66564 3.73222 3.96007 4.08090 4.11871 4.16070 4.18247 4.32503 4.34233 4.47321 4.51000 4.53030 4.55177 4.58840 4.64459 4.67812 4.82596 4.86023 4.91977 4.97131 5.11031 5.24154 5.27360 5.30989 5.53543 5.61173 5.76743 5.81749 5.89998 6.05923 6.24540 6.40212 6.47013 6.76803 7.12587 7.36762 8.83928 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.005116 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.193626 B = 5471.562659 C = 7060.405548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.060 3.940 4 C 0.113 3.887 5 N -0.580 5.580 6 C 0.250 3.750 7 C -0.557 4.557 8 H 0.044 0.956 9 C 0.031 3.969 10 N -0.909 5.909 11 Si 0.949 3.051 12 H -0.278 1.278 13 H -0.276 1.276 14 H -0.275 1.275 15 C 0.504 3.496 16 O -0.576 6.576 17 C 0.034 3.966 18 H 0.151 0.849 19 O -0.306 6.306 20 C 0.033 3.967 21 C -0.132 4.132 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.129 4.129 25 C 0.044 3.956 26 O -0.313 6.313 27 C 0.071 3.929 28 H 0.107 0.893 29 C -0.144 4.144 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.269 0.731 40 H 0.135 0.865 41 H 0.165 0.835 42 H 0.168 0.832 43 H 0.146 0.854 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 10.918 -6.261 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.018 4.018 4 C -0.010 4.010 5 N -0.311 5.311 6 C 0.130 3.870 7 C -0.596 4.596 8 H 0.062 0.938 9 C -0.171 4.171 10 N -0.548 5.548 11 Si 0.775 3.225 12 H -0.203 1.203 13 H -0.201 1.201 14 H -0.200 1.200 15 C 0.292 3.708 16 O -0.457 6.457 17 C -0.026 4.026 18 H 0.168 0.832 19 O -0.220 6.220 20 C -0.012 4.012 21 C -0.151 4.151 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.001 4.001 26 O -0.228 6.228 27 C 0.014 3.986 28 H 0.125 0.875 29 C -0.201 4.201 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.153 0.847 41 H 0.182 0.818 42 H 0.186 0.814 43 H 0.164 0.836 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.060 11.089 -6.174 14.523 hybrid contribution 0.929 -0.778 0.687 1.393 sum -6.131 10.311 -5.487 13.192 Atomic orbital electron populations 1.22884 0.79920 1.03498 1.00558 1.87999 1.21148 1.27683 1.95451 1.22855 0.93128 0.85067 1.00751 1.21540 0.93214 0.99411 0.86819 1.48122 1.63230 1.09223 1.10506 1.19356 0.95547 0.73587 0.98541 1.21749 0.95681 0.92502 1.49651 0.93776 1.25509 1.00897 0.96193 0.94487 1.69986 1.34927 1.01338 1.48531 0.85639 0.80585 0.78048 0.78205 1.20265 1.20148 1.20038 1.20714 0.76683 0.86864 0.86583 1.90603 1.54668 1.14991 1.85431 1.23411 0.92842 0.96571 0.89770 0.83201 1.86370 1.36937 1.31616 1.67055 1.19332 0.92838 0.88881 1.00128 1.20734 0.99400 0.92369 1.02552 1.21270 0.96811 0.96000 0.99151 1.21303 0.92370 0.99363 0.99928 1.20747 1.01897 0.91594 1.00487 1.19225 0.87365 0.92465 1.01034 1.86224 1.34327 1.17909 1.84357 1.23124 0.93405 0.82588 0.99485 0.87512 1.21974 0.98537 0.99110 1.00447 0.93986 0.88931 0.92613 0.89999 0.94479 0.89667 0.89428 0.94616 0.94041 0.92167 0.84738 0.81770 0.81430 0.83643 0.88683 0.88777 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.40 -13.52 9.62 -148.98 -1.43 -14.95 16 3 C 0.06 1.89 6.28 71.98 0.45 2.34 16 4 C 0.11 4.24 5.84 86.38 0.50 4.75 16 5 N -0.58 -24.99 1.79 -826.14 -1.48 -26.48 16 6 C 0.25 11.80 3.92 85.63 0.34 12.13 16 7 C -0.56 -29.28 8.85 25.60 0.23 -29.05 16 8 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 9 C 0.03 1.60 5.46 84.65 0.46 2.06 16 10 N -0.91 -48.78 13.29 21.45 0.28 -48.50 16 11 Si 0.95 42.17 29.54 68.60 2.03 44.20 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 C 0.50 22.44 5.53 87.66 0.48 22.93 16 16 O -0.58 -27.68 14.42 15.07 0.22 -27.46 16 17 C 0.03 1.40 2.88 30.01 0.09 1.49 16 18 H 0.15 6.58 5.89 -2.39 -0.01 6.56 16 19 O -0.31 -13.03 10.11 -70.18 -0.71 -13.74 16 20 C 0.03 1.25 5.37 22.56 0.12 1.37 16 21 C -0.13 -4.17 9.96 22.37 0.22 -3.95 16 22 C -0.11 -2.73 10.04 22.26 0.22 -2.50 16 23 C -0.11 -2.53 10.04 22.27 0.22 -2.31 16 24 C -0.13 -3.68 9.96 22.37 0.22 -3.45 16 25 C 0.04 1.59 5.67 22.56 0.13 1.71 16 26 O -0.31 -11.55 9.66 -80.26 -0.78 -12.33 16 27 C 0.07 2.49 3.34 30.75 0.10 2.59 16 28 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 29 C -0.14 -4.61 8.19 71.98 0.59 -4.02 16 30 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 3.21 8.07 -2.39 -0.02 3.19 16 36 H 0.09 3.26 7.35 -2.39 -0.02 3.24 16 37 H 0.04 1.82 7.22 -2.38 -0.02 1.81 16 38 H 0.04 1.95 3.75 -2.39 -0.01 1.94 16 39 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 40 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 41 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 43 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 44 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 45 H 0.09 3.05 6.78 -2.39 -0.02 3.03 16 46 H 0.06 2.13 6.09 -2.39 -0.01 2.12 16 Total: -1.00 -67.61 372.60 4.75 -62.85 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.99 Total: 28.40 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.63 Total: 8.00 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -1.20 Total: -74.97 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -2.70 Total: -68.48 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -67.61 4.75 -62.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.966 kcal (2) G-P(sol) polarization free energy of solvation -67.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds