Wall clock time and date at job start Tue Mar 31 2020 19:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 113.99766 * 2 1 4 4 C 1.53003 * 109.47097 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47046 * 64.99794 * 4 3 2 6 6 C 1.46507 * 120.00540 * 265.11049 * 5 4 3 7 7 C 1.50695 * 109.46802 * 270.00248 * 6 5 4 8 8 H 1.07995 * 120.00673 * 359.97438 * 7 6 5 9 9 C 1.37889 * 119.99470 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99847 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99874 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47192 * 59.99761 * 11 9 7 13 13 H 1.48498 * 109.47288 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47203 * 299.99954 * 11 9 7 15 15 C 1.34776 * 119.99788 * 85.11232 * 5 4 3 16 16 O 1.21287 * 119.99860 * 185.74449 * 15 5 4 17 17 C 1.50695 * 120.00366 * 5.74283 * 15 5 4 18 18 H 1.09007 * 109.70189 * 333.87439 * 17 15 5 19 19 O 1.43172 * 109.70978 * 213.24912 * 17 15 5 20 20 C 1.36109 * 116.72153 * 194.14208 * 19 17 15 21 21 C 1.38701 * 119.40536 * 197.00401 * 20 19 17 22 22 C 1.38191 * 120.06875 * 180.39600 * 21 20 19 23 23 C 1.38253 * 120.11456 * 359.94254 * 22 21 20 24 24 C 1.38205 * 120.11222 * 359.96015 * 23 22 21 25 25 C 1.38702 * 120.06048 * 0.04052 * 24 23 22 26 26 O 1.36113 * 119.38697 * 180.12893 * 25 24 23 27 27 C 1.43177 * 116.69041 * 197.31291 * 26 25 24 28 28 H 1.09004 * 109.70651 * 73.39153 * 27 26 25 29 29 C 1.52997 * 109.71236 * 194.02316 * 27 26 25 30 30 H 1.09000 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46856 * 299.99792 * 1 2 3 32 32 H 1.09005 * 109.47230 * 59.99120 * 1 2 3 33 33 H 1.08995 * 109.47544 * 60.00572 * 3 2 1 34 34 H 1.09001 * 109.47691 * 299.99911 * 3 2 1 35 35 H 1.09007 * 109.46991 * 305.00648 * 4 3 2 36 36 H 1.08994 * 109.47476 * 185.00516 * 4 3 2 37 37 H 1.09000 * 109.46268 * 30.00099 * 6 5 4 38 38 H 1.08997 * 109.47045 * 149.99534 * 6 5 4 39 39 H 0.97002 * 119.99720 * 180.02562 * 10 9 7 40 40 H 1.07999 * 119.96656 * 0.38312 * 21 20 19 41 41 H 1.07999 * 119.94520 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.94799 * 179.68635 * 23 22 21 43 43 H 1.07996 * 119.96338 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.46986 * 54.89200 * 29 27 26 45 45 H 1.09000 * 109.47150 * 174.89237 * 29 27 26 46 46 H 1.08999 * 109.47192 * 294.88949 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2085 -0.8808 -1.3121 7 6 5.6433 -1.1734 -0.9565 8 1 6.3148 -0.3640 -0.7112 9 6 6.0989 -2.4748 -0.9443 10 7 5.2810 -3.4606 -1.2426 11 14 7.8776 -2.8376 -0.5042 12 1 8.1579 -2.3465 0.8690 13 1 8.1132 -4.3026 -0.5632 14 1 8.7757 -2.1522 -1.4680 15 6 4.1665 1.3234 -2.3500 16 8 4.4293 0.7992 -3.4117 17 6 4.0535 2.8232 -2.2578 18 1 3.3944 3.0921 -1.4322 19 8 3.5295 3.3442 -3.4842 20 6 3.6421 4.6869 -3.6764 21 6 2.8630 5.3041 -4.6438 22 6 2.9722 6.6653 -4.8560 23 6 3.8571 7.4158 -4.1044 24 6 4.6350 6.8074 -3.1375 25 6 4.5302 5.4416 -2.9194 26 8 5.3010 4.8571 -1.9618 27 6 5.4430 3.4340 -2.0307 28 1 6.1005 3.1699 -2.8590 29 6 6.0289 2.9098 -0.7182 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8515 0.5681 0.8409 36 1 3.9786 2.1764 0.0890 37 1 3.5489 -1.3843 -0.6053 38 1 4.0032 -1.2407 -2.3203 39 1 5.6014 -4.3761 -1.2336 40 1 2.1704 4.7203 -5.2319 41 1 2.3648 7.1437 -5.6101 42 1 3.9439 8.4785 -4.2760 43 1 5.3252 7.3960 -2.5514 44 1 5.4107 3.2443 0.1150 45 1 6.0510 1.8202 -0.7397 46 1 7.0424 3.2913 -0.5947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591169258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:01 Heat of formation + Delta-G solvation = -111.736320 kcal Electronic energy + Delta-G solvation = -30476.071234 eV Core-core repulsion = 26332.479499 eV Total energy + Delta-G solvation = -4143.591736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53681 -39.37574 -37.77678 -37.55078 -37.11817 -35.06765 -33.16811 -32.43850 -30.78934 -29.73861 -29.16251 -28.03383 -26.56393 -25.93941 -23.86575 -23.01811 -22.84125 -22.61852 -20.77190 -19.07267 -18.66733 -17.80642 -16.96381 -16.56545 -16.42136 -16.11067 -15.67616 -15.45392 -15.21098 -14.92107 -14.73817 -14.64690 -14.46984 -14.15177 -13.91887 -13.72274 -13.34935 -13.07418 -12.62875 -12.48769 -12.31829 -12.16640 -11.98449 -11.90665 -11.84294 -11.71864 -11.37235 -11.29308 -10.99238 -10.97744 -10.83243 -10.49594 -10.35270 -10.18140 -9.68653 -9.51045 -9.08757 -8.74218 -8.43155 -8.12364 -7.78823 -6.04779 -4.10629 1.18835 1.21806 2.61683 2.96346 3.20429 3.30387 3.35652 3.38225 3.61596 3.90068 3.94470 4.18344 4.41959 4.54941 4.62030 4.70865 4.85719 4.92278 5.14302 5.17034 5.22871 5.25921 5.29499 5.30980 5.34085 5.37502 5.44194 5.49814 5.51650 5.66310 5.71557 5.80574 5.84688 6.02674 6.07403 6.10056 6.18653 6.33856 6.52763 6.84069 7.08878 7.31297 7.36592 7.42777 7.51818 7.91210 8.20205 8.24534 8.75138 8.94985 9.53786 11.03154 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.003913 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.963559 B = 7153.951670 C = 8388.782463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.041 3.959 4 C 0.097 3.903 5 N -0.578 5.578 6 C 0.251 3.749 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.064 3.936 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.519 3.481 16 O -0.512 6.512 17 C 0.034 3.966 18 H 0.097 0.903 19 O -0.282 6.282 20 C 0.056 3.944 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.115 4.115 25 C 0.050 3.950 26 O -0.303 6.303 27 C 0.066 3.934 28 H 0.094 0.906 29 C -0.158 4.158 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.264 0.736 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 19.511 1.565 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.037 4.037 4 C -0.027 4.027 5 N -0.310 5.310 6 C 0.133 3.867 7 C -0.572 4.572 8 H 0.075 0.925 9 C -0.138 4.138 10 N -0.528 5.528 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.303 3.697 16 O -0.387 6.387 17 C -0.026 4.026 18 H 0.115 0.885 19 O -0.195 6.195 20 C 0.010 3.990 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.134 4.134 25 C 0.005 3.995 26 O -0.217 6.217 27 C 0.009 3.991 28 H 0.112 0.888 29 C -0.214 4.214 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.426 18.734 1.011 19.831 hybrid contribution 0.690 -0.075 0.343 0.774 sum -5.736 18.658 1.354 19.567 Atomic orbital electron populations 1.22720 0.81810 1.02714 0.99253 1.88082 1.18927 1.26659 1.95162 1.23137 0.95095 0.85725 0.99766 1.21855 0.91562 0.99519 0.89751 1.48122 1.64125 1.10886 1.07888 1.19403 0.96339 0.71561 0.99413 1.21391 0.95723 0.92459 1.47664 0.92496 1.24907 0.97728 0.96056 0.95148 1.69930 1.35205 0.99602 1.48061 0.86600 0.84941 0.77254 0.78860 1.20197 1.21174 1.20212 1.19292 0.79393 0.85829 0.85226 1.90721 1.46836 1.73290 1.27806 1.23325 0.96630 0.95626 0.87044 0.88525 1.86397 1.76879 1.18278 1.37961 1.19095 0.97164 0.83476 0.99229 1.20466 0.99636 0.94579 0.98616 1.20885 0.99653 0.92725 1.00342 1.20881 0.96953 1.00006 0.96152 1.20431 1.01745 0.91338 0.99860 1.18996 0.93614 0.93376 0.93558 1.86322 1.65846 1.21653 1.47929 1.23034 0.95138 0.78463 1.02423 0.88799 1.22112 1.02017 1.03608 0.93709 0.89629 0.94561 0.94505 0.92701 0.93779 0.87961 0.89808 0.93406 0.93875 0.92619 0.84746 0.85175 0.85238 0.84903 0.90898 0.87824 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.21 10.07 -35.23 -0.35 -6.57 16 3 C 0.04 0.58 6.00 37.16 0.22 0.80 16 4 C 0.10 1.51 4.80 -4.04 -0.02 1.49 16 5 N -0.58 -11.86 1.83 -175.06 -0.32 -12.18 16 6 C 0.25 6.45 5.09 -5.19 -0.03 6.42 16 7 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 8 H 0.06 1.49 7.06 -52.49 -0.37 1.11 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 11 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.52 10.97 5.90 -10.99 -0.06 10.90 16 16 O -0.51 -13.26 16.35 -11.47 -0.19 -13.45 16 17 C 0.03 0.58 2.51 -27.64 -0.07 0.51 16 18 H 0.10 1.41 5.48 -51.92 -0.28 1.13 16 19 O -0.28 -5.09 9.82 -45.73 -0.45 -5.54 16 20 C 0.06 0.86 6.49 -39.14 -0.25 0.61 16 21 C -0.11 -1.45 9.96 -39.43 -0.39 -1.84 16 22 C -0.12 -1.18 10.04 -39.59 -0.40 -1.58 16 23 C -0.12 -1.17 10.04 -39.59 -0.40 -1.57 16 24 C -0.12 -1.32 9.96 -39.42 -0.39 -1.71 16 25 C 0.05 0.71 6.49 -39.14 -0.25 0.46 16 26 O -0.30 -4.46 10.07 -32.89 -0.33 -4.79 16 27 C 0.07 1.03 3.16 -26.49 -0.08 0.95 16 28 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 29 C -0.16 -2.14 8.19 37.16 0.30 -1.84 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.62 7.55 -51.93 -0.39 0.23 16 35 H 0.10 1.63 8.04 -51.93 -0.42 1.21 16 36 H 0.08 1.05 3.70 -51.93 -0.19 0.86 16 37 H 0.05 1.28 7.58 -51.93 -0.39 0.89 16 38 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.07 0.82 6.69 -51.93 -0.35 0.48 16 45 H 0.10 1.68 5.55 -51.93 -0.29 1.39 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -34.12 375.15 -7.84 -41.96 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.43 Total: 2.04 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.13 Total: 1.99 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.42 Total: -37.61 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -1.32 Total: -30.35 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.12 -7.84 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.774 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds