Wall clock time and date at job start Tue Mar 31 2020 19:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 113.99766 * 2 1 4 4 C 1.53003 * 109.47097 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47046 * 64.99794 * 4 3 2 6 6 C 1.46507 * 120.00540 * 265.11049 * 5 4 3 7 7 C 1.50695 * 109.46802 * 270.00248 * 6 5 4 8 8 H 1.07995 * 120.00673 * 359.97438 * 7 6 5 9 9 C 1.37889 * 119.99470 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99847 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99874 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47192 * 59.99761 * 11 9 7 13 13 H 1.48498 * 109.47288 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47203 * 299.99954 * 11 9 7 15 15 C 1.34776 * 119.99788 * 85.11232 * 5 4 3 16 16 O 1.21287 * 119.99860 * 185.74449 * 15 5 4 17 17 C 1.50695 * 120.00366 * 5.74283 * 15 5 4 18 18 H 1.09007 * 109.70189 * 333.87439 * 17 15 5 19 19 O 1.43172 * 109.70978 * 213.24912 * 17 15 5 20 20 C 1.36109 * 116.72153 * 194.14208 * 19 17 15 21 21 C 1.38701 * 119.40536 * 197.00401 * 20 19 17 22 22 C 1.38191 * 120.06875 * 180.39600 * 21 20 19 23 23 C 1.38253 * 120.11456 * 359.94254 * 22 21 20 24 24 C 1.38205 * 120.11222 * 359.96015 * 23 22 21 25 25 C 1.38702 * 120.06048 * 0.04052 * 24 23 22 26 26 O 1.36113 * 119.38697 * 180.12893 * 25 24 23 27 27 C 1.43177 * 116.69041 * 197.31291 * 26 25 24 28 28 H 1.09004 * 109.70651 * 73.39153 * 27 26 25 29 29 C 1.52997 * 109.71236 * 194.02316 * 27 26 25 30 30 H 1.09000 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46856 * 299.99792 * 1 2 3 32 32 H 1.09005 * 109.47230 * 59.99120 * 1 2 3 33 33 H 1.08995 * 109.47544 * 60.00572 * 3 2 1 34 34 H 1.09001 * 109.47691 * 299.99911 * 3 2 1 35 35 H 1.09007 * 109.46991 * 305.00648 * 4 3 2 36 36 H 1.08994 * 109.47476 * 185.00516 * 4 3 2 37 37 H 1.09000 * 109.46268 * 30.00099 * 6 5 4 38 38 H 1.08997 * 109.47045 * 149.99534 * 6 5 4 39 39 H 0.97002 * 119.99720 * 180.02562 * 10 9 7 40 40 H 1.07999 * 119.96656 * 0.38312 * 21 20 19 41 41 H 1.07999 * 119.94520 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.94799 * 179.68635 * 23 22 21 43 43 H 1.07996 * 119.96338 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.46986 * 54.89200 * 29 27 26 45 45 H 1.09000 * 109.47150 * 174.89237 * 29 27 26 46 46 H 1.08999 * 109.47192 * 294.88949 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2085 -0.8808 -1.3121 7 6 5.6433 -1.1734 -0.9565 8 1 6.3148 -0.3640 -0.7112 9 6 6.0989 -2.4748 -0.9443 10 7 5.2810 -3.4606 -1.2426 11 14 7.8776 -2.8376 -0.5042 12 1 8.1579 -2.3465 0.8690 13 1 8.1132 -4.3026 -0.5632 14 1 8.7757 -2.1522 -1.4680 15 6 4.1665 1.3234 -2.3500 16 8 4.4293 0.7992 -3.4117 17 6 4.0535 2.8232 -2.2578 18 1 3.3944 3.0921 -1.4322 19 8 3.5295 3.3442 -3.4842 20 6 3.6421 4.6869 -3.6764 21 6 2.8630 5.3041 -4.6438 22 6 2.9722 6.6653 -4.8560 23 6 3.8571 7.4158 -4.1044 24 6 4.6350 6.8074 -3.1375 25 6 4.5302 5.4416 -2.9194 26 8 5.3010 4.8571 -1.9618 27 6 5.4430 3.4340 -2.0307 28 1 6.1005 3.1699 -2.8590 29 6 6.0289 2.9098 -0.7182 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8515 0.5681 0.8409 36 1 3.9786 2.1764 0.0890 37 1 3.5489 -1.3843 -0.6053 38 1 4.0032 -1.2407 -2.3203 39 1 5.6014 -4.3761 -1.2336 40 1 2.1704 4.7203 -5.2319 41 1 2.3648 7.1437 -5.6101 42 1 3.9439 8.4785 -4.2760 43 1 5.3252 7.3960 -2.5514 44 1 5.4107 3.2443 0.1150 45 1 6.0510 1.8202 -0.7397 46 1 7.0424 3.2913 -0.5947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591169258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:00 Heat of formation + Delta-G solvation = -133.878684 kcal Electronic energy + Delta-G solvation = -30477.031399 eV Core-core repulsion = 26332.479499 eV Total energy + Delta-G solvation = -4144.551901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.72958 -40.85476 -38.90437 -38.69414 -38.34656 -36.75168 -34.96936 -33.91489 -31.76709 -31.21231 -30.13615 -29.60142 -28.07095 -27.15374 -25.28129 -24.50475 -24.15558 -23.63937 -22.02288 -20.44185 -19.93538 -19.05922 -18.63474 -18.19943 -17.66429 -17.32001 -17.02732 -16.79704 -16.52891 -16.27798 -15.99970 -15.93900 -15.60629 -15.53022 -15.23475 -14.86683 -14.72220 -14.27411 -14.23878 -13.83603 -13.61693 -13.59789 -13.31252 -13.09383 -12.98841 -12.85554 -12.82609 -12.75853 -12.56189 -12.34861 -12.17073 -12.09678 -11.93456 -11.70031 -11.52731 -10.80434 -10.64006 -10.59221 -9.68363 -9.56700 -9.14654 -8.19434 -6.34386 0.27800 0.28257 1.18733 1.39007 1.43393 1.49657 1.62419 1.92119 2.38411 2.50578 2.72195 2.85293 2.95403 3.10781 3.24044 3.40753 3.51406 3.77347 3.98653 4.05354 4.11476 4.14868 4.22131 4.26517 4.37344 4.41634 4.47598 4.48859 4.54571 4.60107 4.65949 4.81663 4.83499 4.88095 5.04026 5.07800 5.17891 5.21172 5.27915 5.49556 5.51540 5.69603 5.77404 5.82823 6.05912 6.23906 6.29345 6.54154 6.74345 7.10912 7.36603 8.88427 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.003913 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.963559 B = 7153.951670 C = 8388.782463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.040 3.960 4 C 0.091 3.909 5 N -0.575 5.575 6 C 0.272 3.728 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.255 1.255 13 H -0.283 1.283 14 H -0.277 1.277 15 C 0.515 3.485 16 O -0.576 6.576 17 C 0.048 3.952 18 H 0.124 0.876 19 O -0.314 6.314 20 C 0.019 3.981 21 C -0.128 4.128 22 C -0.107 4.107 23 C -0.107 4.107 24 C -0.115 4.115 25 C 0.023 3.977 26 O -0.298 6.298 27 C 0.072 3.928 28 H 0.067 0.933 29 C -0.153 4.153 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.032 0.968 38 H -0.011 1.011 39 H 0.266 0.734 40 H 0.135 0.865 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.155 0.845 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.382 23.549 3.096 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.037 4.037 4 C -0.031 4.031 5 N -0.306 5.306 6 C 0.152 3.848 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.791 3.209 12 H -0.180 1.180 13 H -0.209 1.209 14 H -0.202 1.202 15 C 0.301 3.699 16 O -0.455 6.455 17 C -0.012 4.012 18 H 0.141 0.859 19 O -0.229 6.229 20 C -0.025 4.025 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.021 4.021 26 O -0.213 6.213 27 C 0.015 3.985 28 H 0.085 0.915 29 C -0.209 4.209 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.137 0.863 37 H 0.050 0.950 38 H 0.007 0.993 39 H 0.075 0.925 40 H 0.153 0.847 41 H 0.183 0.817 42 H 0.189 0.811 43 H 0.172 0.828 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.146 22.829 2.589 23.783 hybrid contribution 0.479 -1.185 -0.239 1.300 sum -5.667 21.644 2.351 22.496 Atomic orbital electron populations 1.22884 0.79881 1.03315 1.00799 1.88026 1.21274 1.28439 1.95510 1.23226 0.93537 0.85211 1.01708 1.22231 0.93242 1.00676 0.86968 1.47998 1.63649 1.09107 1.09856 1.18762 0.95729 0.74740 0.95574 1.21731 0.96386 0.92956 1.47188 0.91591 1.25871 1.02422 0.95880 0.94933 1.70080 1.37485 1.00031 1.49234 0.85482 0.78983 0.77052 0.79397 1.17967 1.20864 1.20228 1.20014 0.77831 0.87860 0.84173 1.90674 1.49737 1.74961 1.30156 1.23123 0.98315 0.91947 0.87848 0.85889 1.86323 1.77592 1.20484 1.38477 1.19495 0.99327 0.82360 1.01316 1.20757 0.99621 0.96069 0.98209 1.21341 0.99349 0.91368 1.00394 1.21406 0.95003 1.01863 0.94239 1.20834 1.02097 0.90103 1.00262 1.19363 0.94085 0.94532 0.94154 1.86308 1.66209 1.20432 1.48346 1.22869 0.93694 0.79384 1.02575 0.91469 1.22070 1.03682 1.01660 0.93509 0.89694 0.91619 0.94197 0.88251 0.94020 0.88272 0.86334 0.95009 0.99253 0.92538 0.84705 0.81657 0.81147 0.82765 0.88000 0.90646 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.01 10.07 -148.98 -1.50 -15.51 16 3 C 0.04 1.09 6.00 71.98 0.43 1.53 16 4 C 0.09 2.78 4.80 86.38 0.41 3.20 16 5 N -0.58 -24.75 1.83 -826.15 -1.51 -26.26 16 6 C 0.27 14.96 5.09 85.63 0.44 15.39 16 7 C -0.54 -30.74 9.39 25.60 0.24 -30.50 16 8 H 0.07 3.52 7.06 -2.91 -0.02 3.50 16 9 C 0.01 0.46 5.46 84.66 0.46 0.92 16 10 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 11 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 15 C 0.52 23.06 5.90 87.66 0.52 23.58 16 16 O -0.58 -32.40 16.35 13.23 0.22 -32.18 16 17 C 0.05 1.66 2.51 30.01 0.08 1.74 16 18 H 0.12 3.49 5.48 -2.38 -0.01 3.48 16 19 O -0.31 -11.84 9.82 -70.27 -0.69 -12.53 16 20 C 0.02 0.60 6.49 22.56 0.15 0.74 16 21 C -0.13 -3.11 9.96 22.37 0.22 -2.89 16 22 C -0.11 -1.75 10.04 22.26 0.22 -1.53 16 23 C -0.11 -1.58 10.04 22.27 0.22 -1.35 16 24 C -0.11 -2.25 9.96 22.37 0.22 -2.03 16 25 C 0.02 0.64 6.49 22.56 0.15 0.78 16 26 O -0.30 -8.40 10.07 -82.60 -0.83 -9.23 16 27 C 0.07 2.26 3.16 30.75 0.10 2.35 16 28 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 29 C -0.15 -3.97 8.19 71.98 0.59 -3.38 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 1.14 7.55 -2.39 -0.02 1.13 16 35 H 0.10 3.13 8.04 -2.38 -0.02 3.11 16 36 H 0.12 2.74 3.70 -2.39 -0.01 2.74 16 37 H 0.03 1.83 7.58 -2.39 -0.02 1.81 16 38 H -0.01 -0.69 7.35 -2.39 -0.02 -0.71 16 39 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 41 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 43 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 44 H 0.10 2.00 6.69 -2.38 -0.02 1.98 16 45 H 0.07 2.44 5.55 -2.39 -0.01 2.43 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -81.71 375.15 4.69 -77.02 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.00 Total: 18.41 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.70 Total: 10.48 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -1.23 Total: -82.86 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -2.81 Total: -69.45 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -81.71 4.69 -77.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.856 kcal (2) G-P(sol) polarization free energy of solvation -81.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds