Wall clock time and date at job start Tue Mar 31 2020 19:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00060 * 2 1 4 4 C 1.53002 * 109.47061 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47359 * 65.43073 * 4 3 2 6 6 C 1.46502 * 119.99851 * 276.11666 * 5 4 3 7 7 C 1.50698 * 109.47024 * 269.99788 * 6 5 4 8 8 H 1.08001 * 120.00579 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00088 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99954 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99983 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47315 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46968 * 120.00122 * 11 9 7 14 14 H 1.48497 * 109.47209 * 240.00075 * 11 9 7 15 15 C 1.34776 * 120.00134 * 96.11634 * 5 4 3 16 16 O 1.21283 * 119.99606 * 184.02403 * 15 5 4 17 17 C 1.50697 * 119.99920 * 4.29624 * 15 5 4 18 18 H 1.09000 * 109.70398 * 4.37643 * 17 15 5 19 19 O 1.43178 * 109.70317 * 124.94794 * 17 15 5 20 20 C 1.36111 * 116.71327 * 73.52035 * 19 17 15 21 21 C 1.38700 * 119.39890 * 197.17757 * 20 19 17 22 22 C 1.38194 * 120.06206 * 180.13631 * 21 20 19 23 23 C 1.38251 * 120.11836 * 0.02562 * 22 21 20 24 24 C 1.38196 * 120.11286 * 359.93822 * 23 22 21 25 25 C 1.38701 * 120.06392 * 359.97438 * 24 23 22 26 26 O 1.36099 * 119.39221 * 180.30920 * 25 24 23 27 27 C 1.43198 * 116.69248 * 197.12852 * 26 25 24 28 28 H 1.09001 * 109.72742 * 73.41983 * 27 26 25 29 29 C 1.53007 * 109.70211 * 194.05197 * 27 26 25 30 30 H 1.08992 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47028 * 300.00846 * 1 2 3 32 32 H 1.09000 * 109.46797 * 60.00409 * 1 2 3 33 33 H 1.08997 * 109.47109 * 59.99329 * 3 2 1 34 34 H 1.09002 * 109.46946 * 299.99575 * 3 2 1 35 35 H 1.09003 * 109.46902 * 305.43115 * 4 3 2 36 36 H 1.08995 * 109.46960 * 185.43421 * 4 3 2 37 37 H 1.09001 * 109.47634 * 30.00123 * 6 5 4 38 38 H 1.08996 * 109.47102 * 150.00007 * 6 5 4 39 39 H 0.96995 * 119.99644 * 179.97438 * 10 9 7 40 40 H 1.07997 * 119.97104 * 0.15974 * 21 20 19 41 41 H 1.08010 * 119.94259 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.94543 * 179.97438 * 23 22 21 43 43 H 1.07993 * 119.96775 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.47281 * 186.90068 * 29 27 26 45 45 H 1.08999 * 109.46715 * 306.90196 * 29 27 26 46 46 H 1.09001 * 109.47120 * 66.90113 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9775 0.5734 -1.2552 6 6 3.9792 -0.8845 -1.3994 7 6 5.3119 -1.4315 -0.9571 8 1 6.0807 -0.7605 -0.6034 9 6 5.5495 -2.7890 -1.0028 10 7 4.6132 -3.6063 -1.4329 11 14 7.2013 -3.4670 -0.4538 12 1 8.0749 -2.3487 -0.0166 13 1 6.9989 -4.4078 0.6772 14 1 7.8428 -4.1838 -1.5851 15 6 4.3827 1.3522 -2.2778 16 8 4.6790 0.8505 -3.3415 17 6 4.4732 2.8456 -2.0976 18 1 4.2500 3.1051 -1.0628 19 8 5.7910 3.2933 -2.4340 20 6 6.1111 3.3140 -3.7567 21 6 7.4440 3.3845 -4.1337 22 6 7.7844 3.4091 -5.4728 23 6 6.7978 3.3642 -6.4403 24 6 5.4678 3.2932 -6.0715 25 6 5.1194 3.2663 -4.7293 26 8 3.8058 3.1899 -4.3816 27 6 3.4758 3.5414 -3.0332 28 1 3.5462 4.6218 -2.9069 29 6 2.0545 3.0750 -2.7117 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.8503 0.5622 0.8383 36 1 3.9784 2.1758 0.0980 37 1 3.1884 -1.3116 -0.7827 38 1 3.8073 -1.1465 -2.4433 39 1 4.7805 -4.5612 -1.4655 40 1 8.2167 3.4197 -3.3799 41 1 8.8230 3.4636 -5.7642 42 1 7.0669 3.3840 -7.4861 43 1 4.6991 3.2586 -6.8292 44 1 1.7622 3.4499 -1.7308 45 1 1.3672 3.4572 -3.4664 46 1 2.0215 1.9855 -2.7087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591169259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:04 Heat of formation + Delta-G solvation = -103.214120 kcal Electronic energy + Delta-G solvation = -31037.869253 eV Core-core repulsion = 26894.647067 eV Total energy + Delta-G solvation = -4143.222185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51969 -39.03688 -37.65683 -37.31807 -36.93972 -34.92303 -33.14630 -32.40990 -30.51454 -29.67673 -28.92777 -28.08545 -26.47077 -25.89707 -23.78918 -22.98649 -22.78182 -22.44113 -20.77760 -18.76461 -18.52881 -17.75604 -16.79023 -16.49125 -16.42763 -15.83701 -15.62344 -15.54465 -14.96542 -14.80108 -14.67056 -14.62142 -14.30841 -13.69495 -13.65622 -13.58692 -13.15508 -13.11237 -12.82675 -12.54585 -12.21729 -11.97211 -11.92294 -11.79526 -11.63102 -11.59034 -11.43046 -11.23711 -10.95403 -10.87316 -10.82710 -10.42046 -10.19528 -10.11938 -9.56377 -9.42367 -9.03288 -8.39926 -8.35344 -7.74375 -7.67441 -5.97186 -4.01038 1.49950 1.57265 2.84344 3.13051 3.33608 3.40904 3.45006 3.60959 3.70787 3.93797 3.98395 4.27585 4.48994 4.60409 4.68536 4.81937 4.94212 5.01648 5.14934 5.20468 5.28187 5.34779 5.37892 5.40337 5.46698 5.49242 5.52575 5.54143 5.57324 5.60790 5.62765 5.84355 5.93864 6.05492 6.17143 6.30581 6.40547 6.63933 6.81870 7.06773 7.16676 7.36031 7.51339 7.60908 7.62184 8.00146 8.31411 8.35807 8.86597 9.05759 9.62653 11.10978 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009279 B = 0.005302 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.761531 B = 5279.510155 C = 7444.181419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.030 3.970 4 C 0.103 3.897 5 N -0.580 5.580 6 C 0.248 3.752 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.488 3.512 16 O -0.510 6.510 17 C 0.023 3.977 18 H 0.140 0.860 19 O -0.288 6.288 20 C 0.056 3.944 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.121 4.121 25 C 0.086 3.914 26 O -0.292 6.292 27 C 0.068 3.932 28 H 0.089 0.911 29 C -0.155 4.155 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.077 18.112 -0.728 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.048 4.048 4 C -0.022 4.022 5 N -0.313 5.313 6 C 0.130 3.870 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.272 3.728 16 O -0.386 6.386 17 C -0.038 4.038 18 H 0.157 0.843 19 O -0.201 6.201 20 C 0.012 3.988 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.140 4.140 25 C 0.041 3.959 26 O -0.206 6.206 27 C 0.011 3.989 28 H 0.107 0.893 29 C -0.212 4.212 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.889 17.440 -1.287 18.158 hybrid contribution 0.591 -0.373 0.644 0.950 sum -4.297 17.067 -0.643 17.612 Atomic orbital electron populations 1.22712 0.82005 1.02740 0.99075 1.88139 1.18737 1.26533 1.95132 1.23406 0.95051 0.86064 1.00266 1.21667 0.91655 0.99001 0.89847 1.48217 1.62049 1.09736 1.11291 1.19399 0.97451 0.71276 0.98906 1.21485 0.99530 0.92096 1.43351 0.92638 1.24903 0.96922 0.96821 0.95350 1.69956 1.32990 1.03400 1.46816 0.86490 0.84067 0.78913 0.78240 1.19848 1.20974 1.20945 1.20312 0.79729 0.87516 0.85259 1.90742 1.47590 1.74471 1.25759 1.23613 0.83535 0.94716 1.01898 0.84276 1.86383 1.31292 1.81051 1.21397 1.18840 0.93723 1.03632 0.82637 1.20381 0.92740 1.03029 0.96770 1.20800 0.99469 1.02354 0.91714 1.20813 0.91730 1.01467 0.99487 1.20338 0.96974 1.04033 0.92646 1.18754 0.82523 1.01112 0.93515 1.86300 1.21742 1.84068 1.28499 1.22930 0.95834 0.98815 0.81341 0.89278 1.22066 0.93081 1.03710 1.02354 0.89682 0.94660 0.94575 0.92948 0.92622 0.88649 0.89956 0.92934 0.94252 0.92900 0.85156 0.85451 0.85476 0.85223 0.89805 0.90278 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.10 9.00 -35.23 -0.32 -6.42 16 3 C 0.03 0.40 6.28 37.16 0.23 0.63 16 4 C 0.10 1.61 5.80 -4.04 -0.02 1.58 16 5 N -0.58 -12.33 2.45 -175.07 -0.43 -12.76 16 6 C 0.25 6.66 5.02 -5.19 -0.03 6.63 16 7 C -0.53 -15.34 9.39 -34.44 -0.32 -15.67 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 11 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 12 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 15 C 0.49 10.42 5.35 -10.99 -0.06 10.37 16 16 O -0.51 -13.37 13.94 -18.52 -0.26 -13.63 16 17 C 0.02 0.37 3.09 -27.66 -0.09 0.28 16 18 H 0.14 1.72 5.21 -51.93 -0.27 1.45 16 19 O -0.29 -5.16 10.15 -41.93 -0.43 -5.58 16 20 C 0.06 1.02 5.72 -39.14 -0.22 0.80 16 21 C -0.11 -1.76 9.96 -39.43 -0.39 -2.15 16 22 C -0.13 -1.71 10.04 -39.59 -0.40 -2.11 16 23 C -0.12 -1.57 10.04 -39.59 -0.40 -1.97 16 24 C -0.12 -1.88 9.96 -39.43 -0.39 -2.27 16 25 C 0.09 1.54 5.41 -39.14 -0.21 1.33 16 26 O -0.29 -5.10 9.27 -45.61 -0.42 -5.53 16 27 C 0.07 0.96 3.34 -26.50 -0.09 0.87 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 C -0.16 -1.79 8.14 37.16 0.30 -1.49 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.67 3.88 -51.93 -0.20 0.47 16 35 H 0.10 1.61 8.12 -51.93 -0.42 1.18 16 36 H 0.08 0.99 5.38 -51.93 -0.28 0.71 16 37 H 0.05 1.45 6.58 -51.93 -0.34 1.11 16 38 H 0.04 1.21 7.37 -51.93 -0.38 0.83 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.08 0.67 7.01 -51.93 -0.36 0.31 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 1.16 6.00 -51.93 -0.31 0.85 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -37.56 369.71 -7.98 -45.54 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.35 Total: 1.75 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.07 Total: 0.05 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.31 Total: -39.27 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.42 Total: -31.16 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.56 -7.98 -45.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.671 kcal (2) G-P(sol) polarization free energy of solvation -37.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds