Wall clock time and date at job start Tue Mar 31 2020 19:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00060 * 2 1 4 4 C 1.53002 * 109.47061 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47359 * 65.43073 * 4 3 2 6 6 C 1.46502 * 119.99851 * 276.11666 * 5 4 3 7 7 C 1.50698 * 109.47024 * 269.99788 * 6 5 4 8 8 H 1.08001 * 120.00579 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00088 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99954 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99983 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47315 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46968 * 120.00122 * 11 9 7 14 14 H 1.48497 * 109.47209 * 240.00075 * 11 9 7 15 15 C 1.34776 * 120.00134 * 96.11634 * 5 4 3 16 16 O 1.21283 * 119.99606 * 184.02403 * 15 5 4 17 17 C 1.50697 * 119.99920 * 4.29624 * 15 5 4 18 18 H 1.09000 * 109.70398 * 4.37643 * 17 15 5 19 19 O 1.43178 * 109.70317 * 124.94794 * 17 15 5 20 20 C 1.36111 * 116.71327 * 73.52035 * 19 17 15 21 21 C 1.38700 * 119.39890 * 197.17757 * 20 19 17 22 22 C 1.38194 * 120.06206 * 180.13631 * 21 20 19 23 23 C 1.38251 * 120.11836 * 0.02562 * 22 21 20 24 24 C 1.38196 * 120.11286 * 359.93822 * 23 22 21 25 25 C 1.38701 * 120.06392 * 359.97438 * 24 23 22 26 26 O 1.36099 * 119.39221 * 180.30920 * 25 24 23 27 27 C 1.43198 * 116.69248 * 197.12852 * 26 25 24 28 28 H 1.09001 * 109.72742 * 73.41983 * 27 26 25 29 29 C 1.53007 * 109.70211 * 194.05197 * 27 26 25 30 30 H 1.08992 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47028 * 300.00846 * 1 2 3 32 32 H 1.09000 * 109.46797 * 60.00409 * 1 2 3 33 33 H 1.08997 * 109.47109 * 59.99329 * 3 2 1 34 34 H 1.09002 * 109.46946 * 299.99575 * 3 2 1 35 35 H 1.09003 * 109.46902 * 305.43115 * 4 3 2 36 36 H 1.08995 * 109.46960 * 185.43421 * 4 3 2 37 37 H 1.09001 * 109.47634 * 30.00123 * 6 5 4 38 38 H 1.08996 * 109.47102 * 150.00007 * 6 5 4 39 39 H 0.96995 * 119.99644 * 179.97438 * 10 9 7 40 40 H 1.07997 * 119.97104 * 0.15974 * 21 20 19 41 41 H 1.08010 * 119.94259 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.94543 * 179.97438 * 23 22 21 43 43 H 1.07993 * 119.96775 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.47281 * 186.90068 * 29 27 26 45 45 H 1.08999 * 109.46715 * 306.90196 * 29 27 26 46 46 H 1.09001 * 109.47120 * 66.90113 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9775 0.5734 -1.2552 6 6 3.9792 -0.8845 -1.3994 7 6 5.3119 -1.4315 -0.9571 8 1 6.0807 -0.7605 -0.6034 9 6 5.5495 -2.7890 -1.0028 10 7 4.6132 -3.6063 -1.4329 11 14 7.2013 -3.4670 -0.4538 12 1 8.0749 -2.3487 -0.0166 13 1 6.9989 -4.4078 0.6772 14 1 7.8428 -4.1838 -1.5851 15 6 4.3827 1.3522 -2.2778 16 8 4.6790 0.8505 -3.3415 17 6 4.4732 2.8456 -2.0976 18 1 4.2500 3.1051 -1.0628 19 8 5.7910 3.2933 -2.4340 20 6 6.1111 3.3140 -3.7567 21 6 7.4440 3.3845 -4.1337 22 6 7.7844 3.4091 -5.4728 23 6 6.7978 3.3642 -6.4403 24 6 5.4678 3.2932 -6.0715 25 6 5.1194 3.2663 -4.7293 26 8 3.8058 3.1899 -4.3816 27 6 3.4758 3.5414 -3.0332 28 1 3.5462 4.6218 -2.9069 29 6 2.0545 3.0750 -2.7117 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.8503 0.5622 0.8383 36 1 3.9784 2.1758 0.0980 37 1 3.1884 -1.3116 -0.7827 38 1 3.8073 -1.1465 -2.4433 39 1 4.7805 -4.5612 -1.4655 40 1 8.2167 3.4197 -3.3799 41 1 8.8230 3.4636 -5.7642 42 1 7.0669 3.3840 -7.4861 43 1 4.6991 3.2586 -6.8292 44 1 1.7622 3.4499 -1.7308 45 1 1.3672 3.4572 -3.4664 46 1 2.0215 1.9855 -2.7087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591169259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:03 Heat of formation + Delta-G solvation = -128.974055 kcal Electronic energy + Delta-G solvation = -31038.986287 eV Core-core repulsion = 26894.647067 eV Total energy + Delta-G solvation = -4144.339220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.78247 -40.49948 -38.81772 -38.53293 -38.23772 -36.59524 -34.96318 -33.90936 -31.69627 -31.11963 -30.07768 -29.66171 -27.96633 -27.09132 -25.20652 -24.63269 -24.01470 -23.62227 -22.17896 -20.01885 -19.86043 -19.14365 -18.63368 -18.05811 -17.62847 -17.15036 -16.93170 -16.91901 -16.48734 -16.14679 -15.94475 -15.85248 -15.75329 -15.10060 -14.89687 -14.84785 -14.75111 -14.27063 -14.14130 -13.83742 -13.60127 -13.46352 -13.29731 -13.08299 -12.95990 -12.85659 -12.72983 -12.67824 -12.59196 -12.47592 -12.22271 -12.01378 -11.90321 -11.69190 -11.37471 -10.68518 -10.64505 -10.42639 -9.59823 -9.47691 -8.96596 -8.22879 -6.37401 0.31602 0.41391 1.31717 1.34548 1.40566 1.47409 1.93754 2.19391 2.32654 2.38620 2.78448 2.93321 3.06227 3.09747 3.32610 3.58310 3.65292 3.87197 3.97896 4.12618 4.14323 4.25062 4.30570 4.37981 4.45134 4.47958 4.49728 4.55197 4.61260 4.62467 4.66859 4.86954 4.89371 4.94376 5.07859 5.16376 5.21555 5.24895 5.27047 5.52016 5.52343 5.73487 5.82334 5.88917 6.06716 6.36170 6.40989 6.65919 6.73563 7.21948 7.37065 8.84538 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009279 B = 0.005302 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.761531 B = 5279.510155 C = 7444.181419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.030 3.970 4 C 0.093 3.907 5 N -0.584 5.584 6 C 0.272 3.728 7 C -0.543 4.543 8 H 0.049 0.951 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.965 3.035 12 H -0.268 1.268 13 H -0.266 1.266 14 H -0.282 1.282 15 C 0.481 3.519 16 O -0.572 6.572 17 C 0.030 3.970 18 H 0.181 0.819 19 O -0.298 6.298 20 C 0.022 3.978 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.110 4.110 24 C -0.140 4.140 25 C 0.062 3.938 26 O -0.315 6.315 27 C 0.063 3.937 28 H 0.126 0.874 29 C -0.151 4.151 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.039 0.961 38 H -0.016 1.016 39 H 0.266 0.734 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.141 0.859 44 H 0.127 0.873 45 H 0.092 0.908 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 20.531 0.304 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.047 4.047 4 C -0.030 4.030 5 N -0.316 5.316 6 C 0.151 3.849 7 C -0.582 4.582 8 H 0.067 0.933 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.790 3.210 12 H -0.192 1.192 13 H -0.191 1.191 14 H -0.208 1.208 15 C 0.267 3.733 16 O -0.452 6.452 17 C -0.029 4.029 18 H 0.198 0.802 19 O -0.212 6.212 20 C -0.022 4.022 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.128 4.128 24 C -0.159 4.159 25 C 0.017 3.983 26 O -0.230 6.230 27 C 0.006 3.994 28 H 0.143 0.857 29 C -0.207 4.207 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.057 0.943 38 H 0.002 0.998 39 H 0.075 0.925 40 H 0.157 0.843 41 H 0.180 0.820 42 H 0.182 0.818 43 H 0.159 0.841 44 H 0.145 0.855 45 H 0.111 0.889 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.412 19.903 -0.210 20.387 hybrid contribution 0.405 -1.129 0.267 1.229 sum -4.007 18.774 0.057 19.197 Atomic orbital electron populations 1.22847 0.80068 1.02929 1.00961 1.88069 1.21103 1.28873 1.95562 1.23516 0.92747 0.85368 1.03019 1.22091 0.94124 1.00268 0.86467 1.48149 1.62110 1.07696 1.13598 1.18682 0.96105 0.75213 0.94883 1.21750 1.00253 0.92592 1.43589 0.93320 1.25847 1.00939 0.97145 0.95199 1.70082 1.35162 1.03860 1.47546 0.85405 0.79070 0.78390 0.78177 1.19209 1.19101 1.20761 1.21286 0.78009 0.89913 0.84054 1.90695 1.50079 1.76222 1.28166 1.23760 0.84075 0.90368 1.04722 0.80221 1.86352 1.32164 1.80989 1.21732 1.19212 0.94732 1.05523 0.82780 1.20768 0.92375 1.03188 0.98293 1.21265 1.01350 1.00746 0.90781 1.21296 0.90780 0.99349 1.01398 1.20745 0.98497 1.04276 0.92341 1.19110 0.82737 1.01970 0.94458 1.86253 1.21829 1.84539 1.30410 1.23365 0.96142 1.00458 0.79387 0.85672 1.22144 0.92033 1.01262 1.05289 0.90569 0.91671 0.93594 0.88349 0.91311 0.90207 0.85637 0.94309 0.99785 0.92503 0.84250 0.81967 0.81848 0.84125 0.85451 0.88923 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.42 -13.81 9.00 -148.98 -1.34 -15.15 16 3 C 0.03 0.73 6.28 71.98 0.45 1.18 16 4 C 0.09 2.80 5.80 86.38 0.50 3.30 16 5 N -0.58 -25.56 2.45 -826.17 -2.02 -27.59 16 6 C 0.27 15.52 5.02 85.63 0.43 15.95 16 7 C -0.54 -33.00 9.39 25.60 0.24 -32.76 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 9 C 0.01 0.46 5.46 84.65 0.46 0.92 16 10 N -0.93 -58.64 13.29 21.45 0.28 -58.35 16 11 Si 0.97 47.00 29.54 68.60 2.03 49.03 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 15 C 0.48 21.14 5.35 87.66 0.47 21.61 16 16 O -0.57 -31.82 13.94 19.98 0.28 -31.54 16 17 C 0.03 0.95 3.09 30.00 0.09 1.04 16 18 H 0.18 3.84 5.21 -2.39 -0.01 3.83 16 19 O -0.30 -10.59 10.15 -73.93 -0.75 -11.34 16 20 C 0.02 0.79 5.72 22.56 0.13 0.92 16 21 C -0.13 -4.02 9.96 22.37 0.22 -3.80 16 22 C -0.12 -3.17 10.04 22.26 0.22 -2.94 16 23 C -0.11 -2.79 10.04 22.26 0.22 -2.57 16 24 C -0.14 -4.33 9.96 22.37 0.22 -4.10 16 25 C 0.06 2.26 5.41 22.56 0.12 2.38 16 26 O -0.32 -11.15 9.27 -70.24 -0.65 -11.80 16 27 C 0.06 1.67 3.34 30.74 0.10 1.77 16 28 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 29 C -0.15 -3.16 8.14 71.98 0.59 -2.58 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.47 3.88 -2.39 -0.01 1.46 16 35 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 36 H 0.13 2.59 5.38 -2.39 -0.01 2.58 16 37 H 0.04 2.29 6.58 -2.39 -0.02 2.27 16 38 H -0.02 -1.07 7.37 -2.39 -0.02 -1.09 16 39 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 44 H 0.13 1.48 7.01 -2.39 -0.02 1.46 16 45 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.04 1.19 6.00 -2.39 -0.01 1.18 16 Total: -1.00 -90.29 369.71 4.55 -85.75 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 1.00 Total: 18.77 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 5.73 Total: 2.22 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.74 Total: -85.94 kcal Atomic # 8 Polarization: -67.36 SS G_CDS: -2.46 Total: -69.83 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -90.29 4.55 -85.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591169259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.229 kcal (2) G-P(sol) polarization free energy of solvation -90.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds