Wall clock time and date at job start Tue Mar 31 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00116 * 2 1 4 4 O 1.20823 * 119.99872 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99837 * 179.97438 * 3 2 1 6 6 O 1.42906 * 109.46831 * 179.97438 * 5 3 2 7 7 C 1.35714 * 116.99809 * 179.97438 * 6 5 3 8 8 C 1.38994 * 119.91238 * 0.29948 * 7 6 5 9 9 C 1.37705 * 120.08995 * 180.25303 * 8 7 6 10 10 C 1.39735 * 119.90753 * 359.45080 * 9 8 7 11 11 C 1.47599 * 120.08729 * 180.29580 * 10 9 8 12 12 O 1.21581 * 120.00280 * 317.35753 * 11 10 9 13 13 N 1.34776 * 120.00005 * 137.35589 * 11 10 9 14 14 C 1.46497 * 120.00196 * 212.66246 * 13 11 10 15 15 C 1.50696 * 109.47196 * 90.00298 * 14 13 11 16 16 H 1.08000 * 119.99865 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99982 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00083 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00015 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47117 * 90.00030 * 19 17 15 21 21 H 1.48495 * 109.47214 * 209.99911 * 19 17 15 22 22 H 1.48496 * 109.46896 * 330.00390 * 19 17 15 23 23 C 1.46509 * 119.99842 * 32.66569 * 13 11 10 24 24 C 1.52998 * 109.46623 * 301.38172 * 23 13 11 25 25 C 1.52993 * 109.47151 * 61.38253 * 23 13 11 26 26 C 1.39736 * 119.82661 * 0.27687 * 10 9 8 27 27 C 1.37706 * 119.90703 * 359.97438 * 26 10 9 28 28 H 1.08996 * 109.47463 * 300.00335 * 1 2 3 29 29 H 1.09000 * 109.47053 * 60.00562 * 1 2 3 30 30 H 1.08996 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47083 * 60.00082 * 5 3 2 32 32 H 1.08999 * 109.47430 * 299.99376 * 5 3 2 33 33 H 1.08005 * 119.95715 * 0.02562 * 8 7 6 34 34 H 1.07996 * 120.04512 * 179.72169 * 9 8 7 35 35 H 1.09002 * 109.47174 * 210.00445 * 14 13 11 36 36 H 1.08994 * 109.47029 * 329.99804 * 14 13 11 37 37 H 0.96994 * 119.99845 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.46776 * 181.38699 * 23 13 11 39 39 H 1.09003 * 109.47730 * 13.42769 * 24 23 13 40 40 H 1.09004 * 109.46878 * 133.42225 * 24 23 13 41 41 H 1.09000 * 109.47725 * 253.42267 * 24 23 13 42 42 H 1.08999 * 109.46941 * 103.93937 * 25 23 13 43 43 H 1.09006 * 109.46978 * 223.93628 * 25 23 13 44 44 H 1.09002 * 109.47709 * 343.93373 * 25 23 13 45 45 H 1.07997 * 120.04816 * 180.02562 * 26 10 9 46 46 H 1.08002 * 119.95698 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 8 3.9715 2.6452 -0.0001 7 6 5.3058 2.8931 0.0008 8 6 6.2074 1.8353 -0.0039 9 6 7.5620 2.0826 0.0023 10 6 8.0298 3.3993 0.0017 11 6 9.4810 3.6690 0.0018 12 8 10.2201 3.0190 0.7154 13 7 9.9867 4.6359 -0.7893 14 6 11.3275 4.4881 -1.3607 15 6 11.2311 3.7962 -2.6960 16 1 10.2674 3.4962 -3.0804 17 6 12.3732 3.5453 -3.4265 18 7 12.2891 2.9410 -4.5916 19 14 14.0401 4.0636 -2.7614 20 1 14.6147 2.9598 -1.9510 21 1 14.9504 4.3724 -3.8932 22 1 13.8802 5.2704 -1.9111 23 6 9.1956 5.8348 -1.0778 24 6 7.8784 5.4289 -1.7420 25 6 8.9012 6.5777 0.2269 26 6 7.1202 4.4601 0.0007 27 6 5.7671 4.2043 -0.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8909 33 1 5.8450 0.8178 -0.0087 34 1 8.2619 1.2601 0.0032 35 1 11.7766 5.4724 -1.4932 36 1 11.9459 3.8943 -0.6876 37 1 13.0925 2.7648 -5.1057 38 1 9.7551 6.4865 -1.7488 39 1 7.7307 4.3547 -1.6298 40 1 7.0534 5.9605 -1.2677 41 1 7.9125 5.6822 -2.8016 42 1 9.5458 7.4537 0.2995 43 1 7.8577 6.8924 0.2382 44 1 9.0904 5.9162 1.0724 45 1 7.4778 5.4791 -0.0001 46 1 5.0634 5.0235 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:31 Heat of formation + Delta-G solvation = -37.067069 kcal Electronic energy + Delta-G solvation = -29125.818300 eV Core-core repulsion = 24985.464466 eV Total energy + Delta-G solvation = -4140.353834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26130 -40.84414 -39.49425 -37.33860 -36.78304 -36.26342 -33.33191 -31.91472 -31.19845 -30.25067 -29.57304 -27.79668 -27.24988 -26.89417 -23.78091 -23.23537 -21.91362 -21.79696 -21.23706 -18.76378 -18.58786 -17.72466 -17.33007 -17.24841 -16.93528 -16.39006 -15.93461 -15.83365 -15.68502 -15.00122 -14.69330 -14.30865 -13.99133 -13.92111 -13.76673 -13.55939 -13.35347 -13.14316 -12.95718 -12.56422 -12.47772 -12.38186 -12.15860 -12.01436 -11.91336 -11.50084 -11.27772 -11.26262 -11.10843 -10.85122 -10.82959 -10.62404 -10.50421 -10.17885 -10.16266 -9.57558 -9.26016 -8.65653 -8.62790 -8.01796 -7.62815 -6.13281 -4.13056 1.15519 1.44452 1.70708 1.72643 3.09995 3.23438 3.26926 3.33338 3.35767 3.68721 3.93410 4.20200 4.36170 4.53579 4.56658 4.66542 4.75668 4.80908 4.85282 4.91511 4.95937 5.07869 5.15629 5.20743 5.28523 5.31934 5.49669 5.66140 5.71009 5.79278 5.83869 5.85243 6.03069 6.13448 6.16219 6.28622 6.31074 6.50011 6.54430 6.60139 6.74865 6.92065 7.15051 7.28058 7.41106 7.55921 8.21735 8.43234 8.76547 8.91807 9.47135 10.99638 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.002542 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.353117 B =11011.582673 C =11616.336335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.464 3.536 4 O -0.483 6.483 5 C 0.067 3.933 6 O -0.295 6.295 7 C 0.150 3.850 8 C -0.235 4.235 9 C -0.017 4.017 10 C -0.181 4.181 11 C 0.579 3.421 12 O -0.534 6.534 13 N -0.605 5.605 14 C 0.218 3.782 15 C -0.536 4.536 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.137 3.863 24 C -0.203 4.203 25 C -0.181 4.181 26 C -0.047 4.047 27 C -0.187 4.187 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.181 0.819 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.238 -0.564 9.605 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.305 3.695 4 O -0.369 6.369 5 C -0.009 4.009 6 O -0.208 6.208 7 C 0.105 3.895 8 C -0.254 4.254 9 C -0.036 4.036 10 C -0.185 4.185 11 C 0.367 3.633 12 O -0.411 6.411 13 N -0.338 5.338 14 C 0.098 3.902 15 C -0.574 4.574 16 H 0.095 0.905 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.701 3.299 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.189 1.189 23 C 0.032 3.968 24 C -0.259 4.259 25 C -0.239 4.239 26 C -0.064 4.064 27 C -0.206 4.206 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.198 0.802 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.096 -0.535 9.815 22.371 hybrid contribution 0.728 -0.095 -0.127 0.745 sum -19.369 -0.630 9.688 21.666 Atomic orbital electron populations 1.23341 0.75262 1.04084 1.02916 1.86449 1.24107 1.32370 1.84365 1.23026 0.91047 0.81928 0.73496 1.90727 1.66673 1.36174 1.43289 1.21877 0.88722 0.84414 1.05891 1.86008 1.21504 1.24391 1.88914 1.19121 0.80667 0.94459 0.95252 1.21029 0.93658 0.98128 1.12567 1.20936 0.94566 0.95960 0.92152 1.20149 0.94493 0.94215 1.09610 1.17913 0.86834 0.79686 0.78832 1.90700 1.61330 1.50905 1.38147 1.47684 1.18570 1.18160 1.49360 1.19713 0.78856 0.97381 0.94221 1.21424 0.95722 1.38588 1.01673 0.90539 1.24854 0.98944 0.94476 0.94639 1.69893 1.29232 1.41634 1.12626 0.86868 0.84308 0.79837 0.78843 1.19888 1.21054 1.18939 1.21031 0.92900 0.87159 0.95678 1.23724 0.96313 1.04406 1.01451 1.22741 1.01292 1.01526 0.98327 1.22849 0.91999 1.02290 0.89239 1.20194 0.95378 0.94024 1.10976 0.91609 0.91556 0.87608 0.87214 0.87307 0.85157 0.84854 0.95169 0.94433 0.92511 0.88404 0.88361 0.91103 0.91968 0.91409 0.91050 0.91567 0.80234 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.91 10.56 -39.25 -0.41 -3.32 16 3 C 0.46 4.65 8.03 36.01 0.29 4.94 16 4 O -0.48 -6.48 16.25 -25.47 -0.41 -6.90 16 5 C 0.07 0.58 5.33 36.01 0.19 0.77 16 6 O -0.29 -3.58 9.66 -38.80 -0.37 -3.96 16 7 C 0.15 1.91 6.70 -39.02 -0.26 1.65 16 8 C -0.24 -2.95 9.01 -39.50 -0.36 -3.31 16 9 C -0.02 -0.27 9.65 -39.22 -0.38 -0.65 16 10 C -0.18 -3.07 4.27 -104.96 -0.45 -3.52 16 11 C 0.58 12.02 5.84 -12.44 -0.07 11.95 16 12 O -0.53 -12.83 16.80 5.29 0.09 -12.74 16 13 N -0.61 -12.37 2.38 -168.67 -0.40 -12.77 16 14 C 0.22 5.26 4.39 -5.20 -0.02 5.24 16 15 C -0.54 -14.92 9.94 -34.44 -0.34 -15.26 16 16 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 19 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 23 C 0.14 2.15 3.27 -67.93 -0.22 1.93 16 24 C -0.20 -2.90 7.72 37.16 0.29 -2.61 16 25 C -0.18 -2.20 8.36 37.15 0.31 -1.89 16 26 C -0.05 -0.64 4.87 -39.22 -0.19 -0.83 16 27 C -0.19 -2.37 9.71 -39.50 -0.38 -2.75 16 28 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 29 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 0.74 7.64 -51.93 -0.40 0.34 16 32 H 0.11 0.69 7.66 -51.93 -0.40 0.29 16 33 H 0.13 1.22 6.28 -52.48 -0.33 0.89 16 34 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16 36 H 0.04 0.97 6.79 -51.93 -0.35 0.61 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.10 1.54 7.81 -51.93 -0.41 1.13 16 39 H 0.10 1.63 4.00 -61.36 -0.25 1.38 16 40 H 0.07 0.78 5.24 -51.93 -0.27 0.51 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 44 H 0.07 0.90 6.82 -51.93 -0.35 0.55 16 45 H 0.18 2.19 1.06 -53.82 -0.06 2.13 16 46 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -35.93 370.58 -6.50 -42.43 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.04 Total: 2.46 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.63 Total: -1.08 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.37 Total: -39.02 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.11 Total: -26.92 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.93 -6.50 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.366 kcal (2) G-P(sol) polarization free energy of solvation -35.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds