Wall clock time and date at job start Tue Mar 31 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00116 * 2 1 4 4 O 1.20823 * 119.99872 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99837 * 179.97438 * 3 2 1 6 6 O 1.42906 * 109.46831 * 179.97438 * 5 3 2 7 7 C 1.35714 * 116.99809 * 179.97438 * 6 5 3 8 8 C 1.38994 * 119.91238 * 0.29948 * 7 6 5 9 9 C 1.37705 * 120.08995 * 180.25303 * 8 7 6 10 10 C 1.39735 * 119.90753 * 359.45080 * 9 8 7 11 11 C 1.47599 * 120.08729 * 180.29580 * 10 9 8 12 12 O 1.21581 * 120.00280 * 317.35753 * 11 10 9 13 13 N 1.34776 * 120.00005 * 137.35589 * 11 10 9 14 14 C 1.46497 * 120.00196 * 212.66246 * 13 11 10 15 15 C 1.50696 * 109.47196 * 90.00298 * 14 13 11 16 16 H 1.08000 * 119.99865 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99982 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00083 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00015 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47117 * 90.00030 * 19 17 15 21 21 H 1.48495 * 109.47214 * 209.99911 * 19 17 15 22 22 H 1.48496 * 109.46896 * 330.00390 * 19 17 15 23 23 C 1.46509 * 119.99842 * 32.66569 * 13 11 10 24 24 C 1.52998 * 109.46623 * 301.38172 * 23 13 11 25 25 C 1.52993 * 109.47151 * 61.38253 * 23 13 11 26 26 C 1.39736 * 119.82661 * 0.27687 * 10 9 8 27 27 C 1.37706 * 119.90703 * 359.97438 * 26 10 9 28 28 H 1.08996 * 109.47463 * 300.00335 * 1 2 3 29 29 H 1.09000 * 109.47053 * 60.00562 * 1 2 3 30 30 H 1.08996 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47083 * 60.00082 * 5 3 2 32 32 H 1.08999 * 109.47430 * 299.99376 * 5 3 2 33 33 H 1.08005 * 119.95715 * 0.02562 * 8 7 6 34 34 H 1.07996 * 120.04512 * 179.72169 * 9 8 7 35 35 H 1.09002 * 109.47174 * 210.00445 * 14 13 11 36 36 H 1.08994 * 109.47029 * 329.99804 * 14 13 11 37 37 H 0.96994 * 119.99845 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.46776 * 181.38699 * 23 13 11 39 39 H 1.09003 * 109.47730 * 13.42769 * 24 23 13 40 40 H 1.09004 * 109.46878 * 133.42225 * 24 23 13 41 41 H 1.09000 * 109.47725 * 253.42267 * 24 23 13 42 42 H 1.08999 * 109.46941 * 103.93937 * 25 23 13 43 43 H 1.09006 * 109.46978 * 223.93628 * 25 23 13 44 44 H 1.09002 * 109.47709 * 343.93373 * 25 23 13 45 45 H 1.07997 * 120.04816 * 180.02562 * 26 10 9 46 46 H 1.08002 * 119.95698 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 8 3.9715 2.6452 -0.0001 7 6 5.3058 2.8931 0.0008 8 6 6.2074 1.8353 -0.0039 9 6 7.5620 2.0826 0.0023 10 6 8.0298 3.3993 0.0017 11 6 9.4810 3.6690 0.0018 12 8 10.2201 3.0190 0.7154 13 7 9.9867 4.6359 -0.7893 14 6 11.3275 4.4881 -1.3607 15 6 11.2311 3.7962 -2.6960 16 1 10.2674 3.4962 -3.0804 17 6 12.3732 3.5453 -3.4265 18 7 12.2891 2.9410 -4.5916 19 14 14.0401 4.0636 -2.7614 20 1 14.6147 2.9598 -1.9510 21 1 14.9504 4.3724 -3.8932 22 1 13.8802 5.2704 -1.9111 23 6 9.1956 5.8348 -1.0778 24 6 7.8784 5.4289 -1.7420 25 6 8.9012 6.5777 0.2269 26 6 7.1202 4.4601 0.0007 27 6 5.7671 4.2043 -0.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8909 33 1 5.8450 0.8178 -0.0087 34 1 8.2619 1.2601 0.0032 35 1 11.7766 5.4724 -1.4932 36 1 11.9459 3.8943 -0.6876 37 1 13.0925 2.7648 -5.1057 38 1 9.7551 6.4865 -1.7488 39 1 7.7307 4.3547 -1.6298 40 1 7.0534 5.9605 -1.2677 41 1 7.9125 5.6822 -2.8016 42 1 9.5458 7.4537 0.2995 43 1 7.8577 6.8924 0.2382 44 1 9.0904 5.9162 1.0724 45 1 7.4778 5.4791 -0.0001 46 1 5.0634 5.0235 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:30 Heat of formation + Delta-G solvation = -60.390818 kcal Electronic energy + Delta-G solvation = -29126.829694 eV Core-core repulsion = 24985.464466 eV Total energy + Delta-G solvation = -4141.365228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.41052 -41.70202 -40.53346 -38.61614 -37.77491 -37.42215 -35.22567 -33.63273 -32.23283 -31.36288 -30.52698 -29.48563 -28.00388 -27.88593 -25.30159 -24.33295 -23.43472 -23.02415 -22.13336 -19.91743 -19.64964 -19.09257 -18.59046 -18.09890 -18.04051 -17.70260 -17.38623 -16.71826 -16.59079 -16.41573 -16.19489 -15.82325 -15.24749 -14.96109 -14.79157 -14.60865 -14.46777 -14.29706 -14.14442 -14.11509 -13.76250 -13.53264 -13.28522 -13.19082 -13.03364 -12.92791 -12.65320 -12.42344 -12.25668 -12.15224 -11.95853 -11.89334 -11.77067 -11.67937 -11.57528 -11.23642 -10.88506 -10.83544 -9.69950 -9.37323 -9.04292 -8.34523 -6.39956 0.00885 0.39296 0.96548 1.03302 1.33159 1.36184 1.45142 1.61931 2.25420 2.30435 2.46094 2.74229 2.99614 3.52213 3.62656 3.77626 3.82205 3.85556 3.98812 4.01447 4.10681 4.20432 4.26420 4.27896 4.31843 4.41361 4.56365 4.64731 4.67704 4.70611 4.81266 4.86599 4.90578 4.98401 5.02849 5.10086 5.19202 5.19401 5.24713 5.38265 5.40836 5.49795 5.55083 5.72830 6.20498 6.26584 6.55672 6.62657 6.67968 7.12962 7.28905 8.81723 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.002542 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.353117 B =11011.582673 C =11616.336335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.468 3.532 4 O -0.525 6.525 5 C 0.058 3.942 6 O -0.307 6.307 7 C 0.158 3.842 8 C -0.226 4.226 9 C -0.037 4.037 10 C -0.210 4.210 11 C 0.572 3.428 12 O -0.583 6.583 13 N -0.612 5.612 14 C 0.227 3.773 15 C -0.538 4.538 16 H 0.035 0.965 17 C 0.016 3.984 18 N -0.941 5.941 19 Si 0.943 3.057 20 H -0.276 1.276 21 H -0.275 1.275 22 H -0.241 1.241 23 C 0.125 3.875 24 C -0.200 4.200 25 C -0.174 4.174 26 C -0.036 4.036 27 C -0.186 4.186 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.164 0.836 34 H 0.117 0.883 35 H 0.048 0.952 36 H 0.018 0.982 37 H 0.269 0.731 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.049 0.951 45 H 0.197 0.803 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.905 0.585 10.692 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.311 3.689 4 O -0.413 6.413 5 C -0.017 4.017 6 O -0.220 6.220 7 C 0.113 3.887 8 C -0.245 4.245 9 C -0.056 4.056 10 C -0.213 4.213 11 C 0.363 3.637 12 O -0.464 6.464 13 N -0.344 5.344 14 C 0.105 3.895 15 C -0.576 4.576 16 H 0.053 0.947 17 C -0.183 4.183 18 N -0.581 5.581 19 Si 0.766 3.234 20 H -0.202 1.202 21 H -0.200 1.200 22 H -0.164 1.164 23 C 0.022 3.978 24 C -0.256 4.256 25 C -0.231 4.231 26 C -0.053 4.053 27 C -0.204 4.204 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.181 0.819 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.131 0.869 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.128 0.872 44 H 0.068 0.932 45 H 0.213 0.787 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.811 0.627 10.901 24.391 hybrid contribution 1.037 -0.576 -0.507 1.290 sum -20.774 0.051 10.394 23.229 Atomic orbital electron populations 1.23638 0.73826 1.06126 1.02790 1.86452 1.25527 1.31310 1.83737 1.23297 0.91523 0.81790 0.72246 1.90714 1.67617 1.37485 1.45492 1.22248 0.88016 0.83090 1.08371 1.85992 1.20743 1.26689 1.88559 1.19222 0.81058 0.94588 0.93879 1.21240 0.92077 1.00010 1.11149 1.20972 0.95918 0.95191 0.93486 1.19953 0.92469 0.95871 1.13044 1.18588 0.88541 0.78706 0.77849 1.90647 1.62985 1.52370 1.40355 1.47762 1.17860 1.19881 1.48930 1.19382 0.81139 0.97223 0.91789 1.21596 0.94118 1.38679 1.03253 0.94670 1.25772 1.03286 0.94444 0.94775 1.70034 1.30613 1.43243 1.14221 0.85788 0.78884 0.80169 0.78607 1.20169 1.20006 1.16388 1.21413 0.92882 0.85562 0.97946 1.23719 0.97024 1.03562 1.01295 1.22681 1.04129 1.01125 0.95210 1.22907 0.91943 1.01973 0.88449 1.20500 0.95113 0.95030 1.09790 0.91674 0.91837 0.84504 0.84895 0.84454 0.81863 0.86491 0.93378 0.96374 0.92226 0.88669 0.90478 0.86898 0.92856 0.89761 0.87225 0.93154 0.78749 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.02 10.56 -51.40 -0.54 -5.56 16 3 C 0.47 8.47 8.03 71.24 0.57 9.04 16 4 O -0.52 -13.46 16.25 28.40 0.46 -13.00 16 5 C 0.06 0.83 5.33 71.24 0.38 1.21 16 6 O -0.31 -6.57 9.66 -71.27 -0.69 -7.26 16 7 C 0.16 3.62 6.70 22.63 0.15 3.77 16 8 C -0.23 -5.29 9.01 22.32 0.20 -5.09 16 9 C -0.04 -1.16 9.65 22.51 0.22 -0.94 16 10 C -0.21 -7.19 4.27 -20.08 -0.09 -7.28 16 11 C 0.57 24.67 5.84 86.71 0.51 25.17 16 12 O -0.58 -29.54 16.80 -3.97 -0.07 -29.60 16 13 N -0.61 -25.56 2.38 -805.82 -1.92 -27.47 16 14 C 0.23 11.14 4.39 85.63 0.38 11.51 16 15 C -0.54 -31.15 9.94 25.60 0.25 -30.89 16 16 H 0.03 2.26 8.06 -2.91 -0.02 2.24 16 17 C 0.02 0.92 5.47 84.66 0.46 1.38 16 18 N -0.94 -58.57 13.96 21.45 0.30 -58.27 16 19 Si 0.94 44.14 27.47 68.60 1.88 46.03 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 23 C 0.13 3.80 3.27 44.99 0.15 3.95 16 24 C -0.20 -5.46 7.72 71.98 0.56 -4.91 16 25 C -0.17 -3.78 8.36 71.98 0.60 -3.17 16 26 C -0.04 -0.92 4.87 22.51 0.11 -0.81 16 27 C -0.19 -4.15 9.71 22.32 0.22 -3.93 16 28 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 29 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 30 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.13 1.33 7.64 -2.39 -0.02 1.31 16 32 H 0.14 1.22 7.66 -2.39 -0.02 1.20 16 33 H 0.16 2.57 6.28 -2.91 -0.02 2.55 16 34 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.05 2.18 6.99 -2.39 -0.02 2.16 16 36 H 0.02 0.96 6.79 -2.39 -0.02 0.95 16 37 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.10 2.90 7.81 -2.39 -0.02 2.88 16 39 H 0.08 2.53 4.00 -11.24 -0.04 2.49 16 40 H 0.11 2.08 5.24 -2.38 -0.01 2.06 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.11 1.53 6.17 -2.38 -0.01 1.51 16 44 H 0.05 1.29 6.82 -2.39 -0.02 1.28 16 45 H 0.20 4.20 1.06 -4.16 0.00 4.19 16 46 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -83.49 370.58 6.22 -77.27 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.93 Total: 17.40 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.86 Total: 0.47 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.62 Total: -85.75 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -0.84 Total: -55.42 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Total: -83.49 6.22 -77.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.881 kcal (2) G-P(sol) polarization free energy of solvation -83.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds