Wall clock time and date at job start Tue Mar 31 2020 19:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00163 * 2 1 4 4 O 1.20819 * 120.00230 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00001 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47237 * 180.02562 * 5 3 2 7 7 C 1.37099 * 120.00240 * 89.99450 * 6 5 3 8 8 H 1.08002 * 120.00088 * 158.25755 * 7 6 5 9 9 C 1.38946 * 120.00145 * 338.25802 * 7 6 5 10 10 N 1.31417 * 120.00063 * 5.86479 * 9 7 6 11 11 Si 1.86797 * 120.00080 * 185.59217 * 9 7 6 12 12 H 1.48493 * 109.47247 * 270.27303 * 11 9 7 13 13 H 1.48498 * 109.47259 * 30.27900 * 11 9 7 14 14 H 1.48503 * 109.46910 * 150.27640 * 11 9 7 15 15 C 1.34776 * 119.99780 * 269.99798 * 6 5 3 16 16 O 1.21294 * 119.99890 * 354.94265 * 15 6 5 17 17 C 1.50701 * 120.00127 * 174.93755 * 15 6 5 18 18 C 1.53002 * 109.47164 * 185.18858 * 17 15 6 19 19 C 1.50697 * 109.46826 * 179.97438 * 18 17 15 20 20 C 1.34521 * 125.79037 * 90.00185 * 19 18 17 21 21 C 1.41380 * 106.84043 * 180.02562 * 20 19 18 22 22 C 1.34514 * 106.84289 * 359.97438 * 21 20 19 23 23 C 1.50698 * 125.78921 * 180.02562 * 22 21 20 24 24 H 1.09005 * 115.54788 * 334.28318 * 23 22 21 25 25 C 1.52995 * 117.49963 * 188.61654 * 23 22 21 26 26 C 1.52993 * 117.49887 * 119.99266 * 23 22 21 27 27 H 1.09006 * 117.49986 * 359.97438 * 26 23 22 28 28 C 1.53004 * 117.50033 * 214.98084 * 26 23 22 29 29 O 1.34300 * 125.79157 * 269.69044 * 19 18 17 30 30 H 1.09000 * 109.47452 * 300.00418 * 1 2 3 31 31 H 1.09005 * 109.47419 * 59.99951 * 1 2 3 32 32 H 1.09000 * 109.47583 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46991 * 59.99675 * 5 3 2 34 34 H 1.09003 * 109.46500 * 299.99949 * 5 3 2 35 35 H 0.96999 * 120.00222 * 174.71617 * 10 9 7 36 36 H 1.08999 * 109.46941 * 305.18480 * 17 15 6 37 37 H 1.08995 * 109.46916 * 65.18405 * 17 15 6 38 38 H 1.08999 * 109.46882 * 299.99657 * 18 17 15 39 39 H 1.09001 * 109.46920 * 60.00127 * 18 17 15 40 40 H 1.07996 * 126.57814 * 359.95866 * 20 19 18 41 41 H 1.08004 * 126.57492 * 179.97438 * 21 20 19 42 42 H 1.09006 * 117.49940 * 359.97438 * 25 23 22 43 43 H 1.09000 * 117.50640 * 144.99892 * 25 23 22 44 44 H 1.08997 * 109.47081 * 60.00016 * 28 26 23 45 45 H 1.09002 * 109.47049 * 180.02562 * 28 26 23 46 46 H 1.08997 * 109.47108 * 299.99888 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1766 3.3363 1.1878 8 1 4.7988 4.2185 1.2214 9 6 3.5736 2.8670 2.3482 10 7 2.9120 1.7316 2.3320 11 14 3.7097 3.8459 3.9333 12 1 4.9204 3.4163 4.6780 13 1 3.8121 5.2927 3.6143 14 1 2.5046 3.6071 4.7676 15 6 4.1724 3.3266 -1.1667 16 8 4.0898 2.7228 -2.2154 17 6 4.4881 4.8002 -1.1685 18 6 4.5284 5.3113 -2.6101 19 6 4.8434 6.7850 -2.6118 20 6 6.0738 7.3264 -2.6637 21 6 5.9049 8.7299 -2.6432 22 6 4.5815 8.9624 -2.5804 23 6 3.9259 10.3186 -2.5385 24 1 4.5377 11.1242 -2.1324 25 6 2.4213 10.3679 -2.2655 26 6 2.9547 10.6690 -3.6676 27 1 2.7902 9.9186 -4.4410 28 6 2.9164 12.1235 -4.1407 29 8 3.9432 7.7807 -2.5676 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9557 0.7808 -0.8908 34 1 3.9563 0.7805 0.8892 35 1 2.5566 1.3655 3.1569 36 1 3.7186 5.3372 -0.6140 37 1 5.4571 4.9647 -0.6974 38 1 5.2979 4.7743 -3.1646 39 1 3.5593 5.1468 -3.0811 40 1 7.0108 6.7915 -2.7109 41 1 6.6882 9.4729 -2.6722 42 1 1.9054 9.4192 -2.1167 43 1 2.0431 11.2057 -1.6799 44 1 3.9012 12.4121 -4.5080 45 1 2.1849 12.2257 -4.9423 46 1 2.6355 12.7690 -3.3085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609992044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:41 Heat of formation + Delta-G solvation = -78.225884 kcal Electronic energy + Delta-G solvation = -28859.744757 eV Core-core repulsion = 24717.606142 eV Total energy + Delta-G solvation = -4142.138614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44090 -39.45196 -38.36331 -37.86709 -35.54000 -34.59164 -33.50042 -32.57970 -31.56596 -29.74810 -28.69943 -27.63452 -26.27865 -25.03585 -23.82136 -21.97109 -21.55673 -20.88093 -20.18000 -19.69277 -19.22208 -17.14952 -16.91550 -16.54847 -16.16360 -15.77044 -15.47614 -15.23611 -14.98960 -14.58438 -14.46866 -14.23228 -14.06100 -13.64230 -13.28563 -13.11171 -12.74011 -12.63201 -12.48544 -12.36948 -12.21138 -11.95576 -11.80290 -11.64625 -11.64126 -11.37762 -11.27493 -11.20425 -10.78403 -10.70994 -10.56509 -10.50357 -10.42754 -10.24511 -9.80812 -9.64194 -9.53982 -9.01457 -8.66866 -7.99664 -7.95444 -6.46575 -4.09866 1.82457 2.73771 3.00750 3.06331 3.16918 3.19963 3.48836 3.69095 3.74614 3.99313 4.09357 4.32208 4.58966 4.65175 4.67426 4.99931 5.02895 5.06942 5.22226 5.26833 5.42095 5.48917 5.59205 5.62291 5.65120 5.71541 5.75812 5.78950 5.84852 5.93946 5.96910 6.02929 6.05976 6.11662 6.19794 6.31292 6.34705 6.47585 6.54701 6.61550 6.74515 6.89757 7.28802 7.40862 7.48998 7.62466 8.21973 8.94619 9.14549 9.32454 9.71930 10.54902 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.002856 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.380435 B = 9801.552077 C =10326.992257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.491 3.509 4 O -0.515 6.515 5 C 0.154 3.846 6 N -0.432 5.432 7 C -0.324 4.324 8 H 0.103 0.897 9 C 0.041 3.959 10 N -0.886 5.886 11 Si 0.933 3.067 12 H -0.276 1.276 13 H -0.269 1.269 14 H -0.282 1.282 15 C 0.472 3.528 16 O -0.604 6.604 17 C -0.114 4.114 18 C -0.024 4.024 19 C 0.009 3.991 20 C -0.216 4.216 21 C -0.201 4.201 22 C 0.005 3.995 23 C -0.076 4.076 24 H 0.131 0.869 25 C -0.166 4.166 26 C -0.144 4.144 27 H 0.107 0.893 28 C -0.122 4.122 29 O -0.171 6.171 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.273 0.727 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 11.191 -6.084 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.334 3.666 4 O -0.401 6.401 5 C 0.028 3.972 6 N -0.151 5.151 7 C -0.451 4.451 8 H 0.121 0.879 9 C -0.162 4.162 10 N -0.526 5.526 11 Si 0.759 3.241 12 H -0.202 1.202 13 H -0.193 1.193 14 H -0.208 1.208 15 C 0.262 3.738 16 O -0.491 6.491 17 C -0.153 4.153 18 C -0.062 4.062 19 C -0.041 4.041 20 C -0.235 4.235 21 C -0.220 4.220 22 C -0.045 4.045 23 C -0.094 4.094 24 H 0.149 0.851 25 C -0.203 4.203 26 C -0.162 4.162 27 H 0.125 0.875 28 C -0.179 4.179 29 O -0.068 6.068 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.945 11.078 -6.422 12.840 hybrid contribution -0.076 0.490 1.222 1.319 sum 0.869 11.568 -5.200 12.713 Atomic orbital electron populations 1.22912 0.78979 1.01737 1.01468 1.86462 1.21413 1.35534 1.85649 1.23951 0.92331 0.80398 0.69954 1.90498 1.66726 1.36476 1.46377 1.20641 0.86947 0.85575 1.03990 1.43340 1.57878 1.08489 1.05387 1.19704 1.28597 1.12117 0.84725 0.87919 1.25287 0.94229 0.96382 1.00310 1.69588 1.36013 1.18445 1.28541 0.85819 0.77763 0.79928 0.80544 1.20231 1.19323 1.20768 1.20141 0.81590 0.88759 0.83354 1.90538 1.58219 1.68808 1.31520 1.21352 1.03742 0.94513 0.95739 1.19948 1.04548 0.83508 0.98201 1.22695 0.87270 0.90344 1.03771 1.21532 0.97990 0.93877 1.10146 1.21400 0.95295 0.96312 1.09018 1.21249 0.90981 0.85059 1.07228 1.20517 0.92625 0.90918 1.05327 0.85120 1.23198 0.94705 1.04063 0.98351 1.22509 1.02685 0.98690 0.92288 0.87529 1.21376 1.02070 0.93116 1.01321 1.83943 1.37514 1.13930 1.71413 0.92806 0.93264 0.89637 0.90469 0.84495 0.91554 0.89184 0.89708 0.88261 0.89872 0.83500 0.83878 0.87938 0.88018 0.92010 0.91861 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.20 10.56 -39.27 -0.41 -8.62 16 3 C 0.49 12.33 5.90 36.01 0.21 12.55 16 4 O -0.51 -14.39 15.93 -18.74 -0.30 -14.69 16 5 C 0.15 3.73 5.29 -5.19 -0.03 3.71 16 6 N -0.43 -10.81 2.11 -116.09 -0.25 -11.06 16 7 C -0.32 -8.05 9.04 -14.93 -0.14 -8.18 16 8 H 0.10 2.38 6.68 -52.49 -0.35 2.03 16 9 C 0.04 1.01 5.39 -17.47 -0.09 0.92 16 10 N -0.89 -22.61 8.18 55.50 0.45 -22.16 16 11 Si 0.93 19.63 29.56 -169.99 -5.02 14.60 16 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 C 0.47 11.26 7.62 -10.99 -0.08 11.18 16 16 O -0.60 -15.43 15.54 5.55 0.09 -15.34 16 17 C -0.11 -2.25 4.22 -27.88 -0.12 -2.36 16 18 C -0.02 -0.43 5.05 -27.88 -0.14 -0.57 16 19 C 0.01 0.15 6.57 -35.62 -0.23 -0.08 16 20 C -0.22 -3.19 10.81 -39.70 -0.43 -3.62 16 21 C -0.20 -2.74 10.81 -39.70 -0.43 -3.17 16 22 C 0.00 0.07 6.80 -35.63 -0.24 -0.18 16 23 C -0.08 -0.83 5.96 -91.78 -0.55 -1.38 16 24 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 25 C -0.17 -1.73 9.81 -26.74 -0.26 -2.00 16 26 C -0.14 -1.40 6.11 -90.62 -0.55 -1.95 16 27 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 28 C -0.12 -0.88 10.19 37.16 0.38 -0.50 16 29 O -0.17 -2.86 10.36 5.71 0.06 -2.80 16 30 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.78 7.36 -51.93 -0.38 1.40 16 34 H 0.14 3.33 6.27 -51.93 -0.33 3.00 16 35 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 36 H 0.09 1.87 8.03 -51.93 -0.42 1.45 16 37 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 38 H 0.10 1.65 8.04 -51.93 -0.42 1.23 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 42 H 0.10 1.24 7.97 -51.93 -0.41 0.83 16 43 H 0.10 0.86 8.05 -51.93 -0.42 0.45 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -31.30 391.29 -8.03 -39.32 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.90 Total: 8.63 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.64 Total: 6.21 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.21 Total: -33.21 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.57 Total: -41.45 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.30 -8.03 -39.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.903 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds