Wall clock time and date at job start Tue Mar 31 2020 19:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00163 * 2 1 4 4 O 1.20819 * 120.00230 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00001 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47237 * 180.02562 * 5 3 2 7 7 C 1.37099 * 120.00240 * 89.99450 * 6 5 3 8 8 H 1.08002 * 120.00088 * 158.25755 * 7 6 5 9 9 C 1.38946 * 120.00145 * 338.25802 * 7 6 5 10 10 N 1.31417 * 120.00063 * 5.86479 * 9 7 6 11 11 Si 1.86797 * 120.00080 * 185.59217 * 9 7 6 12 12 H 1.48493 * 109.47247 * 270.27303 * 11 9 7 13 13 H 1.48498 * 109.47259 * 30.27900 * 11 9 7 14 14 H 1.48503 * 109.46910 * 150.27640 * 11 9 7 15 15 C 1.34776 * 119.99780 * 269.99798 * 6 5 3 16 16 O 1.21294 * 119.99890 * 354.94265 * 15 6 5 17 17 C 1.50701 * 120.00127 * 174.93755 * 15 6 5 18 18 C 1.53002 * 109.47164 * 185.18858 * 17 15 6 19 19 C 1.50697 * 109.46826 * 179.97438 * 18 17 15 20 20 C 1.34521 * 125.79037 * 90.00185 * 19 18 17 21 21 C 1.41380 * 106.84043 * 180.02562 * 20 19 18 22 22 C 1.34514 * 106.84289 * 359.97438 * 21 20 19 23 23 C 1.50698 * 125.78921 * 180.02562 * 22 21 20 24 24 H 1.09005 * 115.54788 * 334.28318 * 23 22 21 25 25 C 1.52995 * 117.49963 * 188.61654 * 23 22 21 26 26 C 1.52993 * 117.49887 * 119.99266 * 23 22 21 27 27 H 1.09006 * 117.49986 * 359.97438 * 26 23 22 28 28 C 1.53004 * 117.50033 * 214.98084 * 26 23 22 29 29 O 1.34300 * 125.79157 * 269.69044 * 19 18 17 30 30 H 1.09000 * 109.47452 * 300.00418 * 1 2 3 31 31 H 1.09005 * 109.47419 * 59.99951 * 1 2 3 32 32 H 1.09000 * 109.47583 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46991 * 59.99675 * 5 3 2 34 34 H 1.09003 * 109.46500 * 299.99949 * 5 3 2 35 35 H 0.96999 * 120.00222 * 174.71617 * 10 9 7 36 36 H 1.08999 * 109.46941 * 305.18480 * 17 15 6 37 37 H 1.08995 * 109.46916 * 65.18405 * 17 15 6 38 38 H 1.08999 * 109.46882 * 299.99657 * 18 17 15 39 39 H 1.09001 * 109.46920 * 60.00127 * 18 17 15 40 40 H 1.07996 * 126.57814 * 359.95866 * 20 19 18 41 41 H 1.08004 * 126.57492 * 179.97438 * 21 20 19 42 42 H 1.09006 * 117.49940 * 359.97438 * 25 23 22 43 43 H 1.09000 * 117.50640 * 144.99892 * 25 23 22 44 44 H 1.08997 * 109.47081 * 60.00016 * 28 26 23 45 45 H 1.09002 * 109.47049 * 180.02562 * 28 26 23 46 46 H 1.08997 * 109.47108 * 299.99888 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1766 3.3363 1.1878 8 1 4.7988 4.2185 1.2214 9 6 3.5736 2.8670 2.3482 10 7 2.9120 1.7316 2.3320 11 14 3.7097 3.8459 3.9333 12 1 4.9204 3.4163 4.6780 13 1 3.8121 5.2927 3.6143 14 1 2.5046 3.6071 4.7676 15 6 4.1724 3.3266 -1.1667 16 8 4.0898 2.7228 -2.2154 17 6 4.4881 4.8002 -1.1685 18 6 4.5284 5.3113 -2.6101 19 6 4.8434 6.7850 -2.6118 20 6 6.0738 7.3264 -2.6637 21 6 5.9049 8.7299 -2.6432 22 6 4.5815 8.9624 -2.5804 23 6 3.9259 10.3186 -2.5385 24 1 4.5377 11.1242 -2.1324 25 6 2.4213 10.3679 -2.2655 26 6 2.9547 10.6690 -3.6676 27 1 2.7902 9.9186 -4.4410 28 6 2.9164 12.1235 -4.1407 29 8 3.9432 7.7807 -2.5676 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9557 0.7808 -0.8908 34 1 3.9563 0.7805 0.8892 35 1 2.5566 1.3655 3.1569 36 1 3.7186 5.3372 -0.6140 37 1 5.4571 4.9647 -0.6974 38 1 5.2979 4.7743 -3.1646 39 1 3.5593 5.1468 -3.0811 40 1 7.0108 6.7915 -2.7109 41 1 6.6882 9.4729 -2.6722 42 1 1.9054 9.4192 -2.1167 43 1 2.0431 11.2057 -1.6799 44 1 3.9012 12.4121 -4.5080 45 1 2.1849 12.2257 -4.9423 46 1 2.6355 12.7690 -3.3085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609992044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:40 Heat of formation + Delta-G solvation = -93.268014 kcal Electronic energy + Delta-G solvation = -28860.397032 eV Core-core repulsion = 24717.606142 eV Total energy + Delta-G solvation = -4142.790890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.59089 -41.35659 -40.21665 -38.68825 -37.40298 -36.53269 -34.94657 -33.76220 -33.48132 -30.99617 -30.08661 -28.76177 -27.85951 -26.76967 -25.29526 -23.06401 -22.70838 -22.00430 -21.63629 -21.11496 -20.79546 -18.93196 -18.52413 -18.25618 -17.64688 -17.30879 -17.03760 -16.93748 -16.41337 -16.15842 -16.04044 -15.63344 -15.34718 -14.75820 -14.56133 -14.36110 -14.25536 -13.92524 -13.86979 -13.71057 -13.43583 -13.24918 -13.11254 -13.01717 -12.99884 -12.84609 -12.77977 -12.60052 -12.40445 -12.36896 -12.14749 -12.01434 -11.58942 -11.55610 -11.49133 -11.02550 -10.94797 -10.75374 -10.54016 -9.92182 -9.09538 -8.35086 -6.03865 0.68342 1.37564 1.44754 1.54988 1.62317 1.68455 1.82828 1.91255 2.19243 2.33431 2.86359 2.90241 3.12270 3.45183 3.74683 3.87949 3.89567 4.08240 4.09786 4.19619 4.25443 4.33233 4.35368 4.36328 4.39275 4.39430 4.55591 4.67441 4.70768 4.73586 4.82708 4.88091 4.91486 4.95420 4.97403 5.04217 5.07614 5.15089 5.18471 5.23648 5.38695 5.39973 5.62806 5.65387 5.73688 6.26077 6.30647 7.03280 7.21810 7.42953 7.82157 8.66168 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.002856 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.380435 B = 9801.552077 C =10326.992257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.374 6.374 3 C 0.493 3.507 4 O -0.551 6.551 5 C 0.151 3.849 6 N -0.444 5.444 7 C -0.341 4.341 8 H 0.116 0.884 9 C -0.002 4.002 10 N -0.906 5.906 11 Si 0.996 3.004 12 H -0.262 1.262 13 H -0.265 1.265 14 H -0.291 1.291 15 C 0.460 3.540 16 O -0.627 6.627 17 C -0.101 4.101 18 C -0.012 4.012 19 C -0.023 4.023 20 C -0.206 4.206 21 C -0.206 4.206 22 C -0.003 4.003 23 C -0.084 4.084 24 H 0.158 0.842 25 C -0.173 4.173 26 C -0.135 4.135 27 H 0.089 0.911 28 C -0.117 4.117 29 O -0.196 6.196 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.272 0.728 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.076 0.924 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 13.161 -5.647 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.337 3.663 4 O -0.441 6.441 5 C 0.026 3.974 6 N -0.162 5.162 7 C -0.468 4.468 8 H 0.133 0.867 9 C -0.202 4.202 10 N -0.547 5.547 11 Si 0.820 3.180 12 H -0.187 1.187 13 H -0.189 1.189 14 H -0.217 1.217 15 C 0.252 3.748 16 O -0.516 6.516 17 C -0.141 4.141 18 C -0.049 4.049 19 C -0.072 4.072 20 C -0.225 4.225 21 C -0.224 4.224 22 C -0.052 4.052 23 C -0.101 4.101 24 H 0.176 0.824 25 C -0.209 4.209 26 C -0.153 4.153 27 H 0.107 0.893 28 C -0.174 4.174 29 O -0.094 6.094 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.152 0.848 33 H 0.101 0.899 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.082 0.918 40 H 0.184 0.816 41 H 0.191 0.809 42 H 0.095 0.905 43 H 0.143 0.857 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.880 13.023 -5.994 14.459 hybrid contribution -0.440 -0.184 1.039 1.143 sum 1.440 12.839 -4.955 13.837 Atomic orbital electron populations 1.23282 0.76388 1.04842 1.01053 1.86427 1.23916 1.33801 1.84971 1.24048 0.92629 0.80633 0.68983 1.90467 1.67553 1.37780 1.48284 1.20671 0.86913 0.85838 1.04014 1.43581 1.57910 1.08806 1.05942 1.20082 1.29195 1.12666 0.84856 0.86688 1.26126 0.93819 0.97101 1.03149 1.69683 1.36482 1.19492 1.29023 0.84855 0.77690 0.78659 0.76767 1.18681 1.18881 1.21678 1.20834 0.80981 0.90259 0.82775 1.90503 1.59180 1.69716 1.32169 1.21273 1.04011 0.91429 0.97401 1.19714 1.03774 0.84954 0.96475 1.22494 0.88065 0.89782 1.06896 1.21866 0.97896 0.94701 1.08038 1.21774 0.95765 0.96344 1.08558 1.22020 0.91761 0.85376 1.06079 1.20809 0.93006 0.89912 1.06419 0.82424 1.23231 0.94411 1.03740 0.99557 1.22550 1.01378 0.99990 0.91428 0.89266 1.21390 1.02913 0.91140 1.01973 1.83918 1.38483 1.14936 1.72041 0.93792 0.93164 0.84762 0.89892 0.84757 0.91716 0.90524 0.87851 0.87522 0.91826 0.81622 0.80879 0.90510 0.85729 0.91052 0.91259 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.51 16 2 O -0.37 -16.47 10.56 -51.45 -0.54 -17.01 16 3 C 0.49 25.24 5.90 71.24 0.42 25.67 16 4 O -0.55 -31.64 15.93 21.98 0.35 -31.29 16 5 C 0.15 7.51 5.29 85.64 0.45 7.96 16 6 N -0.44 -22.64 2.11 -639.59 -1.35 -23.99 16 7 C -0.34 -17.04 9.04 84.04 0.76 -16.28 16 8 H 0.12 5.29 6.68 -2.91 -0.02 5.27 16 9 C 0.00 -0.09 5.39 84.92 0.46 0.37 16 10 N -0.91 -46.70 8.18 21.66 0.18 -46.52 16 11 Si 1.00 39.89 29.56 68.60 2.03 41.91 16 12 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 13 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 14 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 15 C 0.46 22.49 7.62 87.66 0.67 23.16 16 16 O -0.63 -32.88 15.54 -3.07 -0.05 -32.93 16 17 C -0.10 -4.08 4.22 29.85 0.13 -3.95 16 18 C -0.01 -0.41 5.05 29.85 0.15 -0.26 16 19 C -0.02 -0.76 6.57 24.83 0.16 -0.59 16 20 C -0.21 -5.77 10.81 22.19 0.24 -5.53 16 21 C -0.21 -5.16 10.81 22.19 0.24 -4.92 16 22 C 0.00 -0.08 6.80 24.83 0.17 0.09 16 23 C -0.08 -1.68 5.96 -11.54 -0.07 -1.75 16 24 H 0.16 2.28 8.14 -2.38 -0.02 2.26 16 25 C -0.17 -3.44 9.81 30.59 0.30 -3.14 16 26 C -0.14 -2.45 6.11 -10.80 -0.07 -2.52 16 27 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 28 C -0.12 -1.38 10.19 71.98 0.73 -0.65 16 29 O -0.20 -6.66 10.36 -2.48 -0.03 -6.69 16 30 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.05 1.72 8.13 -2.38 -0.02 1.70 16 32 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.08 3.93 7.36 -2.39 -0.02 3.91 16 34 H 0.14 6.69 6.27 -2.39 -0.01 6.67 16 35 H 0.27 13.49 8.32 -92.71 -0.77 12.72 16 36 H 0.08 3.28 8.03 -2.39 -0.02 3.26 16 37 H 0.10 3.72 7.75 -2.39 -0.02 3.70 16 38 H 0.11 3.59 8.04 -2.39 -0.02 3.57 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.46 16 40 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 41 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 42 H 0.08 1.93 7.97 -2.38 -0.02 1.91 16 43 H 0.12 1.86 8.05 -2.39 -0.02 1.84 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.68 7.90 -2.39 -0.02 0.66 16 Total: -1.00 -68.73 391.29 7.51 -61.22 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.98 Total: 35.16 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 5.94 Total: 20.15 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -1.17 Total: -70.52 kcal Atomic # 8 Polarization: -87.65 SS G_CDS: -0.27 Total: -87.92 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.91 kcal Total: -68.73 7.51 -61.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.052 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds