Wall clock time and date at job start Tue Mar 31 2020 19:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00349 * 2 1 4 4 O 1.20828 * 119.99533 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00111 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47000 * 180.02562 * 5 3 2 7 7 C 1.37096 * 120.00075 * 90.00316 * 6 5 3 8 8 H 1.08001 * 120.00142 * 220.49712 * 7 6 5 9 9 C 1.38955 * 119.99807 * 40.49700 * 7 6 5 10 10 N 1.31408 * 119.99918 * 26.11221 * 9 7 6 11 11 Si 1.86805 * 120.00022 * 206.10876 * 9 7 6 12 12 H 1.48505 * 109.46690 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46786 * 120.00028 * 11 9 7 14 14 H 1.48497 * 109.47244 * 240.00134 * 11 9 7 15 15 C 1.34778 * 119.99868 * 270.00017 * 6 5 3 16 16 O 1.21290 * 120.00230 * 355.08516 * 15 6 5 17 17 C 1.50708 * 119.99734 * 175.08180 * 15 6 5 18 18 C 1.52997 * 109.47043 * 185.26440 * 17 15 6 19 19 C 1.50694 * 109.47185 * 179.97438 * 18 17 15 20 20 C 1.34518 * 125.79090 * 90.00007 * 19 18 17 21 21 C 1.41381 * 106.84329 * 180.02562 * 20 19 18 22 22 C 1.34510 * 106.84053 * 359.97438 * 21 20 19 23 23 C 1.50697 * 125.78907 * 180.02562 * 22 21 20 24 24 H 1.08999 * 115.55333 * 334.42207 * 23 22 21 25 25 C 1.53001 * 117.50115 * 188.74951 * 23 22 21 26 26 C 1.53001 * 117.49776 * 120.09298 * 23 22 21 27 27 H 1.09003 * 117.49982 * 214.98203 * 26 23 22 28 28 C 1.53000 * 117.49954 * 359.97438 * 26 23 22 29 29 O 1.34303 * 125.79131 * 269.69541 * 19 18 17 30 30 H 1.09000 * 109.46474 * 60.00014 * 1 2 3 31 31 H 1.08993 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47390 * 300.00050 * 1 2 3 33 33 H 1.09006 * 109.46986 * 60.00698 * 5 3 2 34 34 H 1.08997 * 109.47720 * 300.00651 * 5 3 2 35 35 H 0.96993 * 120.00216 * 6.15687 * 10 9 7 36 36 H 1.09000 * 109.46910 * 305.26449 * 17 15 6 37 37 H 1.09002 * 109.46710 * 65.26271 * 17 15 6 38 38 H 1.09006 * 109.47113 * 300.00491 * 18 17 15 39 39 H 1.09003 * 109.47068 * 60.00013 * 18 17 15 40 40 H 1.08007 * 126.57487 * 0.03201 * 20 19 18 41 41 H 1.07996 * 126.57494 * 180.02562 * 21 20 19 42 42 H 1.09002 * 117.49477 * 0.02562 * 25 23 22 43 43 H 1.08995 * 117.50106 * 145.00146 * 25 23 22 44 44 H 1.09005 * 109.47326 * 59.99786 * 28 26 23 45 45 H 1.08996 * 109.47697 * 179.97438 * 28 26 23 46 46 H 1.09003 * 109.47426 * 300.00638 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.1758 3.3367 1.1886 8 1 3.8445 4.3585 1.3008 9 6 4.7986 2.6879 2.2478 10 7 5.6358 1.7024 2.0139 11 14 4.4460 3.2168 4.0044 12 1 3.4747 4.3402 3.9975 13 1 3.8744 2.0735 4.7602 14 1 5.7079 3.6568 4.6517 15 6 4.1733 3.3261 -1.1659 16 8 4.0890 2.7225 -2.2146 17 6 4.4921 4.7991 -1.1678 18 6 4.5310 5.3106 -2.6092 19 6 4.8492 6.7836 -2.6111 20 6 6.0806 7.3223 -2.6650 21 6 5.9148 8.7262 -2.6438 22 6 4.5921 8.9614 -2.5788 23 6 3.9395 10.3191 -2.5355 24 1 4.5545 11.1237 -2.1324 25 6 2.4360 10.3717 -2.2568 26 6 2.9653 10.6709 -3.6616 27 1 2.9391 11.7070 -3.9991 28 6 2.7286 9.6176 -4.7457 29 8 3.9513 7.7812 -2.5650 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.9564 0.7805 -0.8893 34 1 3.9558 0.7807 0.8907 35 1 5.8878 1.4862 1.1026 36 1 3.7248 5.3376 -0.6117 37 1 5.4624 4.9613 -0.6983 38 1 5.2984 4.7719 -3.1653 39 1 3.5608 5.1483 -3.0787 40 1 7.0164 6.7854 -2.7151 41 1 6.6997 9.4674 -2.6749 42 1 1.9190 9.4243 -2.1044 43 1 2.0619 11.2109 -1.6704 44 1 2.3281 8.7116 -4.2909 45 1 2.0172 10.0018 -5.4766 46 1 3.6718 9.3885 -5.2419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609992045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:44 Heat of formation + Delta-G solvation = -86.292442 kcal Electronic energy + Delta-G solvation = -28951.563643 eV Core-core repulsion = 24809.075237 eV Total energy + Delta-G solvation = -4142.488406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46890 -39.95921 -38.69071 -37.87490 -35.96507 -35.07139 -33.53745 -32.58962 -31.56294 -29.55891 -28.84172 -27.96031 -26.56703 -24.80325 -23.89315 -22.04815 -21.76231 -20.83339 -20.43939 -19.60723 -19.46957 -17.44918 -17.11086 -16.66036 -16.28177 -16.03772 -15.96526 -15.57451 -15.39267 -14.82505 -14.66387 -14.13702 -13.91848 -13.36635 -13.31632 -13.09688 -13.01686 -12.86401 -12.74734 -12.52350 -12.44939 -12.01383 -11.93337 -11.76421 -11.67080 -11.60261 -11.49604 -11.25873 -10.92409 -10.68465 -10.54538 -10.34501 -10.31638 -10.20332 -9.98978 -9.90894 -9.63978 -9.30888 -8.71215 -7.99143 -7.97381 -6.77809 -4.25666 1.81916 2.73509 2.91297 2.99135 3.07650 3.22597 3.28456 3.46119 3.69031 3.78620 4.13403 4.35005 4.46948 4.51652 4.70637 4.87536 5.01452 5.11879 5.22586 5.25407 5.37330 5.43897 5.49768 5.51197 5.56204 5.61344 5.61550 5.66469 5.78009 5.79274 5.84667 5.88904 5.98232 6.02648 6.10919 6.14610 6.25081 6.30227 6.35482 6.44523 6.57404 6.73715 6.88535 7.39956 7.42671 7.87589 8.21564 8.42771 8.80396 9.22576 9.56313 10.44863 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.003073 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.979135 B = 9108.367961 C =10012.003605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.499 6.499 5 C 0.112 3.888 6 N -0.437 5.437 7 C -0.424 4.424 8 H 0.084 0.916 9 C 0.018 3.982 10 N -0.865 5.865 11 Si 1.071 2.929 12 H -0.282 1.282 13 H -0.281 1.281 14 H -0.283 1.283 15 C 0.491 3.509 16 O -0.599 6.599 17 C -0.110 4.110 18 C -0.025 4.025 19 C 0.007 3.993 20 C -0.213 4.213 21 C -0.202 4.202 22 C 0.010 3.990 23 C -0.079 4.079 24 H 0.131 0.869 25 C -0.168 4.168 26 C -0.141 4.141 27 H 0.110 0.890 28 C -0.125 4.125 29 O -0.170 6.170 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.279 0.721 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 10.534 -6.617 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.290 3.710 4 O -0.385 6.385 5 C -0.014 4.014 6 N -0.157 5.157 7 C -0.551 4.551 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.498 5.498 11 Si 0.896 3.104 12 H -0.207 1.207 13 H -0.206 1.206 14 H -0.209 1.209 15 C 0.282 3.718 16 O -0.484 6.484 17 C -0.149 4.149 18 C -0.063 4.063 19 C -0.043 4.043 20 C -0.232 4.232 21 C -0.221 4.221 22 C -0.040 4.040 23 C -0.096 4.096 24 H 0.149 0.851 25 C -0.205 4.205 26 C -0.159 4.159 27 H 0.128 0.872 28 C -0.182 4.182 29 O -0.067 6.067 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.758 10.114 -5.526 12.123 hybrid contribution -0.338 0.513 -1.301 1.439 sum -4.096 10.628 -6.827 13.279 Atomic orbital electron populations 1.23114 0.77812 1.02774 1.02073 1.86542 1.22443 1.34643 1.84878 1.25012 0.93212 0.81009 0.71789 1.90589 1.66853 1.36372 1.44656 1.21004 0.85701 0.88656 1.06050 1.43124 1.57892 1.08629 1.06029 1.20257 1.42762 1.01149 0.90938 0.89798 1.26421 0.91963 0.95611 1.05150 1.70711 1.24677 1.29414 1.24992 0.83488 0.76610 0.76496 0.73759 1.20704 1.20649 1.20904 1.20472 0.78480 0.89510 0.83351 1.90542 1.56736 1.69157 1.32008 1.21290 1.04403 0.93688 0.95554 1.19951 1.04345 0.83825 0.98141 1.22611 0.87379 0.90201 1.04140 1.21536 0.97983 0.93919 1.09808 1.21399 0.95349 0.96273 1.09084 1.21153 0.90844 0.85005 1.06957 1.20552 0.92605 0.91062 1.05425 0.85112 1.23211 0.94791 1.03979 0.98489 1.22501 1.02541 1.00462 0.90406 0.87155 1.21377 1.01711 0.97777 0.97363 1.83943 1.37431 1.13883 1.71465 0.92501 0.88754 0.92325 0.87618 0.85745 0.91023 0.89552 0.88766 0.88297 0.90094 0.83535 0.83894 0.87948 0.88101 0.91915 0.92120 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -7.03 10.57 -39.25 -0.41 -7.45 16 3 C 0.45 10.09 8.02 36.00 0.29 10.38 16 4 O -0.50 -12.41 16.18 -18.75 -0.30 -12.71 16 5 C 0.11 2.57 5.24 -5.19 -0.03 2.54 16 6 N -0.44 -10.76 1.73 -116.09 -0.20 -10.96 16 7 C -0.42 -10.73 8.51 -14.93 -0.13 -10.86 16 8 H 0.08 2.14 7.08 -52.49 -0.37 1.77 16 9 C 0.02 0.44 4.79 -17.47 -0.08 0.36 16 10 N -0.87 -22.52 12.32 55.50 0.68 -21.83 16 11 Si 1.07 22.56 29.99 -169.99 -5.10 17.46 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 15 C 0.49 11.66 7.62 -10.98 -0.08 11.58 16 16 O -0.60 -15.01 15.54 5.55 0.09 -14.93 16 17 C -0.11 -2.20 4.42 -27.88 -0.12 -2.32 16 18 C -0.03 -0.44 5.05 -27.89 -0.14 -0.58 16 19 C 0.01 0.11 6.57 -35.63 -0.23 -0.12 16 20 C -0.21 -3.19 10.81 -39.70 -0.43 -3.62 16 21 C -0.20 -2.76 10.81 -39.70 -0.43 -3.19 16 22 C 0.01 0.14 5.90 -35.63 -0.21 -0.07 16 23 C -0.08 -0.84 6.23 -91.77 -0.57 -1.41 16 24 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 25 C -0.17 -1.69 9.82 -26.70 -0.26 -1.96 16 26 C -0.14 -1.33 6.41 -90.58 -0.58 -1.91 16 27 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 28 C -0.13 -1.30 9.15 37.16 0.34 -0.96 16 29 O -0.17 -2.76 9.61 5.69 0.05 -2.71 16 30 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.11 2.33 7.36 -51.93 -0.38 1.95 16 34 H 0.13 2.92 5.83 -51.93 -0.30 2.62 16 35 H 0.28 7.32 7.46 -40.82 -0.30 7.02 16 36 H 0.09 1.78 7.56 -51.93 -0.39 1.38 16 37 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 38 H 0.10 1.67 8.04 -51.93 -0.42 1.25 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.15 1.96 8.06 -52.48 -0.42 1.54 16 41 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.10 1.21 7.88 -51.93 -0.41 0.80 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.76 7.26 -51.93 -0.38 0.38 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -30.72 393.15 -7.70 -38.42 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.83 Total: 9.32 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.61 Total: -0.53 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.48 Total: -32.80 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.58 Total: -37.80 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.10 Total: 17.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.72 -7.70 -38.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.876 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds