Wall clock time and date at job start Tue Mar 31 2020 19:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34221 * 117.00305 * 2 1 4 4 O 1.20826 * 119.99907 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00173 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47342 * 180.02562 * 5 3 2 7 7 C 1.37099 * 120.00078 * 269.99874 * 6 5 3 8 8 H 1.07997 * 120.00297 * 202.99150 * 7 6 5 9 9 C 1.38947 * 119.99739 * 22.99955 * 7 6 5 10 10 N 1.31417 * 120.00151 * 351.25028 * 9 7 6 11 11 Si 1.86803 * 120.00093 * 171.26068 * 9 7 6 12 12 H 1.48495 * 109.47539 * 59.99414 * 11 9 7 13 13 H 1.48499 * 109.47218 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46978 * 299.99304 * 11 9 7 15 15 C 1.34779 * 120.00327 * 89.99936 * 6 5 3 16 16 O 1.21294 * 119.99901 * 5.02025 * 15 6 5 17 17 C 1.50707 * 120.00161 * 185.01955 * 15 6 5 18 18 C 1.52997 * 109.46588 * 174.79646 * 17 15 6 19 19 C 1.50707 * 109.46588 * 179.97438 * 18 17 15 20 20 C 1.34510 * 125.79236 * 89.71806 * 19 18 17 21 21 C 1.41384 * 106.84257 * 179.88877 * 20 19 18 22 22 C 1.34515 * 106.83683 * 0.36981 * 21 20 19 23 23 C 1.50708 * 125.78422 * 179.75242 * 22 21 20 24 24 H 1.08994 * 115.54876 * 25.58259 * 23 22 21 25 25 C 1.52996 * 117.49426 * 171.25449 * 23 22 21 26 26 C 1.53001 * 117.49499 * 239.91376 * 23 22 21 27 27 H 1.09002 * 117.49984 * 145.02365 * 26 23 22 28 28 C 1.53001 * 117.49954 * 0.02562 * 26 23 22 29 29 O 1.34296 * 108.42435 * 359.77214 * 22 21 20 30 30 H 1.09000 * 109.46884 * 59.99876 * 1 2 3 31 31 H 1.08997 * 109.47550 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46891 * 300.00243 * 1 2 3 33 33 H 1.08995 * 109.47182 * 59.99964 * 5 3 2 34 34 H 1.09002 * 109.47216 * 300.00305 * 5 3 2 35 35 H 0.96993 * 120.00150 * 185.01088 * 10 9 7 36 36 H 1.09000 * 109.46921 * 54.79780 * 17 15 6 37 37 H 1.09002 * 109.46585 * 294.79604 * 17 15 6 38 38 H 1.09002 * 109.47623 * 299.99322 * 18 17 15 39 39 H 1.09000 * 109.47380 * 60.00415 * 18 17 15 40 40 H 1.08009 * 126.57805 * 0.02562 * 20 19 18 41 41 H 1.08002 * 126.57606 * 180.12272 * 21 20 19 42 42 H 1.09003 * 117.49289 * 214.97570 * 25 23 22 43 43 H 1.08997 * 117.50238 * 359.97438 * 25 23 22 44 44 H 1.09002 * 109.47112 * 60.00615 * 28 26 23 45 45 H 1.08998 * 109.46783 * 180.02562 * 28 26 23 46 46 H 1.08996 * 109.47199 * 300.00431 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6795 0.0011 7 6 4.1767 3.3372 -1.1860 8 1 4.8150 4.2075 -1.2227 9 6 3.5527 2.8840 -2.3418 10 7 2.9177 1.7335 -2.3378 11 14 3.6168 3.9100 -3.9016 12 1 5.0316 4.1027 -4.3096 13 1 2.8806 3.2103 -4.9849 14 1 2.9896 5.2323 -3.6503 15 6 4.1725 3.3255 1.1685 16 8 4.0893 2.7210 2.2168 17 6 4.4892 4.7990 1.1714 18 6 4.5289 5.3091 2.6133 19 6 4.8462 6.7823 2.6163 20 6 3.9467 7.7809 2.5606 21 6 4.6763 8.9916 2.5900 22 6 5.9784 8.6603 2.6535 23 6 7.1328 9.6282 2.6988 24 1 6.9043 10.6136 3.1048 25 6 8.5243 9.0554 2.9752 26 6 8.1647 9.5501 1.5719 27 1 8.6155 10.4842 1.2367 28 6 7.9454 8.4959 0.4849 29 8 6.0754 7.3209 2.6692 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9564 0.7804 -0.8891 34 1 3.9558 0.7807 0.8908 35 1 2.5446 1.3825 -3.1615 36 1 3.7203 5.3369 0.6168 37 1 5.4587 4.9631 0.7010 38 1 3.5594 5.1449 3.0837 39 1 5.2977 4.7711 3.1680 40 1 2.8729 7.6776 2.5064 41 1 4.2668 9.9906 2.5622 42 1 9.2115 9.6644 3.5626 43 1 8.6049 7.9787 3.1246 44 1 6.9915 8.6776 -0.0102 45 1 8.7517 8.5548 -0.2462 46 1 7.9370 7.5042 0.9371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609992046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:47 Heat of formation + Delta-G solvation = -77.230672 kcal Electronic energy + Delta-G solvation = -29248.038990 eV Core-core repulsion = 25105.943531 eV Total energy + Delta-G solvation = -4142.095458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.44992 -39.46001 -38.36857 -37.84435 -35.54388 -34.59430 -33.47221 -32.55832 -31.57248 -29.40012 -28.65315 -27.82839 -26.30602 -25.05732 -23.83136 -21.99801 -21.74036 -20.66517 -20.12268 -19.57306 -19.22102 -17.14039 -16.69048 -16.48263 -16.18418 -15.83690 -15.54469 -15.45266 -15.16396 -14.62962 -14.48330 -14.17871 -14.00901 -13.24499 -13.07210 -13.01200 -12.79746 -12.66849 -12.50462 -12.44748 -12.17260 -11.85914 -11.76398 -11.68342 -11.55942 -11.37440 -11.27384 -11.20375 -10.78872 -10.67035 -10.56314 -10.47866 -10.46428 -10.17104 -9.82074 -9.62231 -9.53581 -9.01808 -8.67102 -7.98645 -7.94854 -6.47262 -4.10349 1.83679 2.76841 3.00716 3.07561 3.16723 3.17570 3.48688 3.70083 3.73007 3.99009 4.08546 4.37697 4.53560 4.63749 4.74737 4.99278 5.04999 5.17612 5.24861 5.28567 5.52694 5.59330 5.64996 5.66401 5.70574 5.75377 5.77846 5.83161 5.92848 5.95135 5.96055 6.05282 6.11993 6.20660 6.22838 6.32343 6.38374 6.48139 6.55060 6.59727 6.76330 6.90119 7.29012 7.41908 7.48332 7.62448 8.21860 8.94543 9.12909 9.32391 9.72145 10.54155 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003134 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.832476 B = 8930.893288 C =10070.287748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.491 3.509 4 O -0.515 6.515 5 C 0.153 3.847 6 N -0.432 5.432 7 C -0.326 4.326 8 H 0.102 0.898 9 C 0.043 3.957 10 N -0.884 5.884 11 Si 0.932 3.068 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.472 3.528 16 O -0.604 6.604 17 C -0.113 4.113 18 C -0.024 4.024 19 C 0.007 3.993 20 C -0.214 4.214 21 C -0.202 4.202 22 C 0.009 3.991 23 C -0.079 4.079 24 H 0.130 0.870 25 C -0.169 4.169 26 C -0.139 4.139 27 H 0.110 0.890 28 C -0.127 4.127 29 O -0.170 6.170 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.274 0.726 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.535 9.499 4.718 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.333 3.667 4 O -0.401 6.401 5 C 0.028 3.972 6 N -0.151 5.151 7 C -0.453 4.453 8 H 0.120 0.880 9 C -0.160 4.160 10 N -0.524 5.524 11 Si 0.758 3.242 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.262 3.738 16 O -0.491 6.491 17 C -0.153 4.153 18 C -0.061 4.061 19 C -0.043 4.043 20 C -0.233 4.233 21 C -0.221 4.221 22 C -0.041 4.041 23 C -0.097 4.097 24 H 0.148 0.852 25 C -0.206 4.206 26 C -0.157 4.157 27 H 0.128 0.872 28 C -0.184 4.184 29 O -0.067 6.067 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.372 9.243 5.077 11.835 hybrid contribution -0.690 0.757 -1.127 1.523 sum 4.682 10.000 3.950 11.728 Atomic orbital electron populations 1.22917 0.78962 1.01760 1.01466 1.86464 1.21424 1.35521 1.85613 1.23975 0.92361 0.80399 0.69946 1.90497 1.66741 1.36476 1.46424 1.20646 0.86901 0.85637 1.04028 1.43322 1.57936 1.08438 1.05369 1.19625 1.27666 1.12980 0.85055 0.88022 1.25288 0.94215 0.96269 1.00213 1.69592 1.36329 1.17829 1.28692 0.85916 0.78415 0.79836 0.80030 1.19809 1.20814 1.19701 1.20155 0.81552 0.88789 0.83347 1.90540 1.58183 1.68761 1.31579 1.21349 1.03654 0.94533 0.95731 1.19938 1.03652 0.84398 0.98153 1.22670 0.81152 0.96444 1.04035 1.21556 1.00574 0.91487 1.09721 1.21404 0.92234 0.99415 1.09051 1.21142 0.94930 0.80898 1.07113 1.20546 0.86628 0.96914 1.05623 0.85226 1.23203 0.96391 1.02195 0.98788 1.22517 1.01414 1.01387 0.90388 0.87182 1.21390 1.01851 0.97826 0.97294 1.83933 1.31693 1.19602 1.71511 0.92816 0.89627 0.93236 0.84434 0.90495 0.91497 0.89029 0.89944 0.88496 0.89720 0.83560 0.83960 0.88228 0.87987 0.91966 0.92029 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.37 -8.13 10.56 -39.23 -0.41 -8.54 16 3 C 0.49 12.21 5.92 36.00 0.21 12.42 16 4 O -0.52 -14.21 15.94 -18.75 -0.30 -14.51 16 5 C 0.15 3.70 5.29 -5.20 -0.03 3.67 16 6 N -0.43 -10.73 2.11 -116.10 -0.25 -10.98 16 7 C -0.33 -8.03 9.00 -14.93 -0.13 -8.17 16 8 H 0.10 2.34 6.72 -52.49 -0.35 1.99 16 9 C 0.04 1.07 5.41 -17.47 -0.09 0.97 16 10 N -0.88 -22.42 8.21 55.50 0.46 -21.97 16 11 Si 0.93 19.54 29.57 -169.99 -5.03 14.51 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 C 0.47 11.20 7.62 -10.98 -0.08 11.11 16 16 O -0.60 -15.38 15.54 5.54 0.09 -15.29 16 17 C -0.11 -2.21 4.23 -27.88 -0.12 -2.32 16 18 C -0.02 -0.41 5.05 -27.88 -0.14 -0.55 16 19 C 0.01 0.11 6.58 -35.62 -0.23 -0.12 16 20 C -0.21 -3.24 10.81 -39.70 -0.43 -3.67 16 21 C -0.20 -2.76 10.81 -39.70 -0.43 -3.19 16 22 C 0.01 0.12 5.89 -35.62 -0.21 -0.09 16 23 C -0.08 -0.83 6.24 -91.77 -0.57 -1.40 16 24 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 25 C -0.17 -1.61 9.82 -26.69 -0.26 -1.87 16 26 C -0.14 -1.34 6.41 -90.58 -0.58 -1.92 16 27 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 28 C -0.13 -1.42 9.15 37.16 0.34 -1.08 16 29 O -0.17 -2.68 9.63 5.71 0.06 -2.63 16 30 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 33 H 0.14 3.33 6.28 -51.93 -0.33 3.01 16 34 H 0.08 1.77 7.36 -51.93 -0.38 1.39 16 35 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 36 H 0.09 1.83 8.03 -51.93 -0.42 1.41 16 37 H 0.08 1.53 7.74 -51.93 -0.40 1.12 16 38 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.08 1.47 8.04 -51.93 -0.42 1.06 16 40 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 41 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.11 7.88 -51.93 -0.41 0.70 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.81 7.27 -51.93 -0.38 0.43 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -30.76 388.67 -8.10 -38.85 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.87 Total: 9.06 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.70 Total: 5.63 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.21 Total: -32.95 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -0.57 Total: -40.97 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.76 -8.10 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.379 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds