Wall clock time and date at job start Tue Mar 31 2020 19:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34221 * 117.00305 * 2 1 4 4 O 1.20826 * 119.99907 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00173 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47342 * 180.02562 * 5 3 2 7 7 C 1.37099 * 120.00078 * 269.99874 * 6 5 3 8 8 H 1.07997 * 120.00297 * 202.99150 * 7 6 5 9 9 C 1.38947 * 119.99739 * 22.99955 * 7 6 5 10 10 N 1.31417 * 120.00151 * 351.25028 * 9 7 6 11 11 Si 1.86803 * 120.00093 * 171.26068 * 9 7 6 12 12 H 1.48495 * 109.47539 * 59.99414 * 11 9 7 13 13 H 1.48499 * 109.47218 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46978 * 299.99304 * 11 9 7 15 15 C 1.34779 * 120.00327 * 89.99936 * 6 5 3 16 16 O 1.21294 * 119.99901 * 5.02025 * 15 6 5 17 17 C 1.50707 * 120.00161 * 185.01955 * 15 6 5 18 18 C 1.52997 * 109.46588 * 174.79646 * 17 15 6 19 19 C 1.50707 * 109.46588 * 179.97438 * 18 17 15 20 20 C 1.34510 * 125.79236 * 89.71806 * 19 18 17 21 21 C 1.41384 * 106.84257 * 179.88877 * 20 19 18 22 22 C 1.34515 * 106.83683 * 0.36981 * 21 20 19 23 23 C 1.50708 * 125.78422 * 179.75242 * 22 21 20 24 24 H 1.08994 * 115.54876 * 25.58259 * 23 22 21 25 25 C 1.52996 * 117.49426 * 171.25449 * 23 22 21 26 26 C 1.53001 * 117.49499 * 239.91376 * 23 22 21 27 27 H 1.09002 * 117.49984 * 145.02365 * 26 23 22 28 28 C 1.53001 * 117.49954 * 0.02562 * 26 23 22 29 29 O 1.34296 * 108.42435 * 359.77214 * 22 21 20 30 30 H 1.09000 * 109.46884 * 59.99876 * 1 2 3 31 31 H 1.08997 * 109.47550 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46891 * 300.00243 * 1 2 3 33 33 H 1.08995 * 109.47182 * 59.99964 * 5 3 2 34 34 H 1.09002 * 109.47216 * 300.00305 * 5 3 2 35 35 H 0.96993 * 120.00150 * 185.01088 * 10 9 7 36 36 H 1.09000 * 109.46921 * 54.79780 * 17 15 6 37 37 H 1.09002 * 109.46585 * 294.79604 * 17 15 6 38 38 H 1.09002 * 109.47623 * 299.99322 * 18 17 15 39 39 H 1.09000 * 109.47380 * 60.00415 * 18 17 15 40 40 H 1.08009 * 126.57805 * 0.02562 * 20 19 18 41 41 H 1.08002 * 126.57606 * 180.12272 * 21 20 19 42 42 H 1.09003 * 117.49289 * 214.97570 * 25 23 22 43 43 H 1.08997 * 117.50238 * 359.97438 * 25 23 22 44 44 H 1.09002 * 109.47112 * 60.00615 * 28 26 23 45 45 H 1.08998 * 109.46783 * 180.02562 * 28 26 23 46 46 H 1.08996 * 109.47199 * 300.00431 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6795 0.0011 7 6 4.1767 3.3372 -1.1860 8 1 4.8150 4.2075 -1.2227 9 6 3.5527 2.8840 -2.3418 10 7 2.9177 1.7335 -2.3378 11 14 3.6168 3.9100 -3.9016 12 1 5.0316 4.1027 -4.3096 13 1 2.8806 3.2103 -4.9849 14 1 2.9896 5.2323 -3.6503 15 6 4.1725 3.3255 1.1685 16 8 4.0893 2.7210 2.2168 17 6 4.4892 4.7990 1.1714 18 6 4.5289 5.3091 2.6133 19 6 4.8462 6.7823 2.6163 20 6 3.9467 7.7809 2.5606 21 6 4.6763 8.9916 2.5900 22 6 5.9784 8.6603 2.6535 23 6 7.1328 9.6282 2.6988 24 1 6.9043 10.6136 3.1048 25 6 8.5243 9.0554 2.9752 26 6 8.1647 9.5501 1.5719 27 1 8.6155 10.4842 1.2367 28 6 7.9454 8.4959 0.4849 29 8 6.0754 7.3209 2.6692 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9564 0.7804 -0.8891 34 1 3.9558 0.7807 0.8908 35 1 2.5446 1.3825 -3.1615 36 1 3.7203 5.3369 0.6168 37 1 5.4587 4.9631 0.7010 38 1 3.5594 5.1449 3.0837 39 1 5.2977 4.7711 3.1680 40 1 2.8729 7.6776 2.5064 41 1 4.2668 9.9906 2.5622 42 1 9.2115 9.6644 3.5626 43 1 8.6049 7.9787 3.1246 44 1 6.9915 8.6776 -0.0102 45 1 8.7517 8.5548 -0.2462 46 1 7.9370 7.5042 0.9371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609992046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:46 Heat of formation + Delta-G solvation = -91.698345 kcal Electronic energy + Delta-G solvation = -29248.666355 eV Core-core repulsion = 25105.943531 eV Total energy + Delta-G solvation = -4142.722824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.58243 -41.34926 -40.20990 -38.65462 -37.39331 -36.51982 -34.91379 -33.74209 -33.48132 -30.86214 -29.90460 -29.03793 -27.88247 -26.79546 -25.30897 -23.03429 -22.82143 -22.03737 -21.49442 -21.09092 -20.62393 -18.92853 -18.49952 -18.18844 -17.33488 -17.30473 -17.06392 -16.87907 -16.54995 -16.22299 -16.07737 -15.96577 -15.34305 -14.63983 -14.44559 -14.24646 -14.14374 -14.03147 -13.88185 -13.71844 -13.45039 -13.32882 -13.18725 -13.03228 -12.96169 -12.84087 -12.71861 -12.59689 -12.37964 -12.35005 -12.14932 -11.99853 -11.57836 -11.49940 -11.47754 -10.95947 -10.93699 -10.74339 -10.53981 -9.90815 -9.08039 -8.35062 -6.03582 0.71162 1.38482 1.44819 1.53615 1.63884 1.68307 1.82514 1.92388 2.19298 2.33479 2.88885 2.92898 3.11911 3.50937 3.75258 3.84103 3.97283 4.07921 4.12344 4.19681 4.26528 4.34171 4.35525 4.40177 4.42217 4.44715 4.54441 4.68653 4.73595 4.74995 4.83810 4.86945 4.89867 4.92704 4.98214 5.02588 5.08221 5.15769 5.18644 5.23948 5.39346 5.42657 5.63553 5.64863 5.74525 6.27485 6.31145 7.03842 7.22029 7.43426 7.82965 8.65879 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003134 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.832476 B = 8930.893288 C =10070.287748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.493 3.507 4 O -0.550 6.550 5 C 0.150 3.850 6 N -0.443 5.443 7 C -0.343 4.343 8 H 0.113 0.887 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.993 3.007 12 H -0.257 1.257 13 H -0.284 1.284 14 H -0.276 1.276 15 C 0.460 3.540 16 O -0.628 6.628 17 C -0.100 4.100 18 C -0.011 4.011 19 C -0.019 4.019 20 C -0.214 4.214 21 C -0.212 4.212 22 C 0.010 3.990 23 C -0.090 4.090 24 H 0.159 0.841 25 C -0.166 4.166 26 C -0.133 4.133 27 H 0.139 0.861 28 C -0.129 4.129 29 O -0.184 6.184 30 H 0.044 0.956 31 H 0.134 0.866 32 H 0.051 0.949 33 H 0.135 0.865 34 H 0.082 0.918 35 H 0.273 0.727 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.154 0.846 41 H 0.169 0.831 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.247 11.532 4.293 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.337 3.663 4 O -0.439 6.439 5 C 0.025 3.975 6 N -0.162 5.162 7 C -0.469 4.469 8 H 0.131 0.869 9 C -0.199 4.199 10 N -0.544 5.544 11 Si 0.817 3.183 12 H -0.181 1.181 13 H -0.210 1.210 14 H -0.201 1.201 15 C 0.251 3.749 16 O -0.516 6.516 17 C -0.139 4.139 18 C -0.049 4.049 19 C -0.069 4.069 20 C -0.233 4.233 21 C -0.231 4.231 22 C -0.039 4.039 23 C -0.108 4.108 24 H 0.176 0.824 25 C -0.202 4.202 26 C -0.151 4.151 27 H 0.157 0.843 28 C -0.186 4.186 29 O -0.082 6.082 30 H 0.063 0.937 31 H 0.152 0.848 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.171 0.829 41 H 0.186 0.814 42 H 0.145 0.855 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.092 11.250 4.656 13.615 hybrid contribution -0.942 0.056 -0.970 1.353 sum 5.151 11.305 3.687 12.959 Atomic orbital electron populations 1.23288 0.76330 1.04837 1.01119 1.86428 1.23962 1.33803 1.84946 1.24022 0.92582 0.80668 0.69055 1.90465 1.67503 1.37700 1.48218 1.20663 0.87012 0.85871 1.03946 1.43558 1.57948 1.08741 1.05910 1.19978 1.28277 1.13474 0.85192 0.86916 1.26099 0.93785 0.97059 1.02909 1.69689 1.36729 1.18854 1.29123 0.84971 0.79031 0.77850 0.76434 1.18134 1.20977 1.20099 1.20846 0.80967 0.90293 0.82771 1.90505 1.59181 1.69667 1.32246 1.21255 1.03708 0.91595 0.97389 1.19682 1.03199 0.85598 0.96401 1.22385 0.81868 0.95877 1.06755 1.21819 1.00986 0.92038 1.08492 1.21721 0.92099 1.00039 1.09204 1.21897 0.96418 0.80368 1.05256 1.20864 0.85901 0.97239 1.06763 0.82361 1.23256 0.96303 1.01523 0.99147 1.22611 1.00869 1.01899 0.89739 0.84307 1.21393 1.01748 0.97325 0.98163 1.83920 1.31505 1.20927 1.71835 0.93730 0.84842 0.93062 0.84792 0.90055 0.91693 0.89463 0.89057 0.89065 0.90334 0.82853 0.81354 0.85475 0.90030 0.93318 0.90537 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.56 113.37 1.20 2.48 16 2 O -0.37 -16.30 10.56 -51.33 -0.54 -16.84 16 3 C 0.49 24.93 5.92 71.24 0.42 25.35 16 4 O -0.55 -30.94 15.94 21.96 0.35 -30.59 16 5 C 0.15 7.45 5.29 85.63 0.45 7.90 16 6 N -0.44 -22.50 2.11 -639.60 -1.35 -23.86 16 7 C -0.34 -17.02 9.00 84.04 0.76 -16.26 16 8 H 0.11 5.19 6.72 -2.91 -0.02 5.17 16 9 C 0.00 0.11 5.41 84.92 0.46 0.57 16 10 N -0.90 -46.20 8.21 21.66 0.18 -46.02 16 11 Si 0.99 39.70 29.57 68.60 2.03 41.72 16 12 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 13 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 14 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 15 C 0.46 22.43 7.62 87.66 0.67 23.10 16 16 O -0.63 -32.90 15.54 -3.07 -0.05 -32.95 16 17 C -0.10 -4.00 4.23 29.85 0.13 -3.87 16 18 C -0.01 -0.40 5.05 29.85 0.15 -0.25 16 19 C -0.02 -0.63 6.58 24.83 0.16 -0.47 16 20 C -0.21 -6.38 10.81 22.19 0.24 -6.14 16 21 C -0.21 -5.45 10.81 22.19 0.24 -5.21 16 22 C 0.01 0.27 5.89 24.84 0.15 0.41 16 23 C -0.09 -1.64 6.24 -11.54 -0.07 -1.71 16 24 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 25 C -0.17 -2.77 9.82 30.62 0.30 -2.47 16 26 C -0.13 -2.21 6.41 -10.77 -0.07 -2.28 16 27 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 28 C -0.13 -2.75 9.15 71.98 0.66 -2.09 16 29 O -0.18 -5.81 9.63 -2.47 -0.02 -5.83 16 30 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 33 H 0.13 6.67 6.28 -2.39 -0.02 6.66 16 34 H 0.08 3.86 7.36 -2.39 -0.02 3.84 16 35 H 0.27 13.45 8.32 -92.71 -0.77 12.68 16 36 H 0.09 3.56 8.03 -2.39 -0.02 3.54 16 37 H 0.09 3.45 7.74 -2.39 -0.02 3.43 16 38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.08 2.85 8.04 -2.39 -0.02 2.83 16 40 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 41 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 42 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.72 7.88 -2.39 -0.02 1.70 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.04 1.05 7.27 -2.39 -0.02 1.03 16 Total: -1.00 -67.15 388.67 7.41 -59.74 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.98 Total: 35.57 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.84 Total: 19.06 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -1.17 Total: -69.88 kcal Atomic # 8 Polarization: -85.95 SS G_CDS: -0.26 Total: -86.21 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.72 kcal Total: -67.15 7.41 -59.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.963 kcal (2) G-P(sol) polarization free energy of solvation -67.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds