Wall clock time and date at job start Tue Mar 31 2020 19:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.58911 * 2 1 4 4 C 1.53178 * 109.59002 * 239.71403 * 2 1 3 5 5 C 1.52952 * 109.58630 * 170.25676 * 4 2 1 6 6 C 1.52349 * 108.86706 * 51.73985 * 5 4 2 7 7 C 1.33304 * 121.75775 * 341.89546 * 6 5 4 8 8 S 1.76561 * 106.53645 * 180.02562 * 7 6 5 9 9 C 1.72217 * 94.66257 * 359.97438 * 8 7 6 10 10 O 1.21832 * 127.07882 * 180.02562 * 9 8 7 11 11 N 1.33886 * 105.83684 * 359.97438 * 9 8 7 12 12 C 1.46498 * 120.93040 * 180.02562 * 11 9 8 13 13 N 1.46901 * 109.46876 * 76.18776 * 12 11 9 14 14 C 1.46903 * 111.00138 * 209.18963 * 13 12 11 15 15 C 1.50698 * 109.46713 * 165.03758 * 14 13 12 16 16 H 1.08002 * 120.00703 * 4.87230 * 15 14 13 17 17 C 1.37884 * 119.99608 * 184.87449 * 15 14 13 18 18 N 1.31514 * 120.00204 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00047 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47036 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46831 * 119.99734 * 19 17 15 22 22 H 1.48493 * 109.47037 * 239.99823 * 19 17 15 23 23 C 1.46908 * 110.99986 * 85.23240 * 13 12 11 24 24 C 1.53006 * 109.46727 * 65.84120 * 23 13 12 25 25 C 1.47200 * 109.46826 * 185.18447 * 24 23 13 26 26 N 6.40220 * 110.14260 * 240.72705 * 2 1 3 27 27 C 1.50352 * 126.49172 * 359.76886 * 7 6 5 28 28 H 1.09001 * 109.46996 * 180.28792 * 1 2 3 29 29 H 1.09002 * 109.47053 * 300.28748 * 1 2 3 30 30 H 1.08996 * 109.47053 * 60.28724 * 1 2 3 31 31 H 1.09001 * 109.44758 * 50.22323 * 4 2 1 32 32 H 1.09004 * 109.43060 * 290.28202 * 4 2 1 33 33 H 1.09000 * 109.57085 * 291.92673 * 5 4 2 34 34 H 1.08991 * 109.67515 * 171.61567 * 5 4 2 35 35 H 1.08998 * 109.47667 * 196.18619 * 12 11 9 36 36 H 1.08999 * 109.46882 * 316.19743 * 12 11 9 37 37 H 1.09000 * 109.46875 * 285.03030 * 14 13 12 38 38 H 1.08993 * 109.46751 * 45.03468 * 14 13 12 39 39 H 0.96993 * 120.00297 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.46981 * 185.83975 * 23 13 12 41 41 H 1.08994 * 109.46989 * 305.84547 * 23 13 12 42 42 H 1.09000 * 109.46797 * 305.17967 * 24 23 13 43 43 H 1.08998 * 109.47089 * 65.18304 * 24 23 13 44 44 H 1.08993 * 109.62108 * 104.59819 * 27 7 6 45 45 H 1.09000 * 109.61856 * 225.15021 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2462 5 6 3.5535 -0.5207 -1.3751 6 6 4.2162 -0.8917 -0.0544 7 6 3.5216 -0.9743 1.0803 8 16 4.6717 -1.4246 2.3420 9 6 6.0278 -1.4802 1.2819 10 8 7.1789 -1.7505 1.5753 11 7 5.5563 -1.1663 0.0687 12 6 6.4451 -1.1160 -1.0947 13 7 6.7549 -2.4833 -1.5336 14 6 8.0788 -2.5455 -2.1673 15 6 8.5194 -3.9830 -2.2699 16 1 7.8484 -4.7760 -1.9741 17 6 9.7792 -4.2859 -2.7413 18 7 10.5961 -3.3204 -3.1019 19 14 10.3257 -6.0677 -2.8678 20 1 9.2297 -6.9558 -2.4039 21 1 10.6550 -6.3853 -4.2806 22 1 11.5266 -6.2784 -2.0202 23 6 5.7147 -2.9950 -2.4360 24 6 5.7190 -2.1820 -3.7322 25 6 4.5984 -2.6115 -4.5845 26 7 3.7346 -2.9390 -5.2431 27 6 2.0482 -0.7250 1.2470 28 1 -0.3633 -1.0277 0.0052 29 1 -0.3633 0.5183 0.8874 30 1 -0.3633 0.5093 -0.8925 31 1 1.5457 -0.3293 -2.1302 32 1 1.8294 -1.7929 -1.1581 33 1 3.7603 0.5242 -1.6064 34 1 3.9443 -1.1550 -2.1706 35 1 5.9534 -0.5771 -1.9046 36 1 7.3682 -0.6032 -0.8248 37 1 8.0248 -2.1100 -3.1651 38 1 8.7961 -1.9876 -1.5656 39 1 11.4822 -3.5335 -3.4339 40 1 5.9139 -4.0422 -2.6633 41 1 4.7407 -2.9064 -1.9549 42 1 5.6117 -1.1231 -3.4972 43 1 6.6593 -2.3438 -4.2594 44 1 1.5266 -1.6755 1.3585 45 1 1.8792 -0.1060 2.1280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728040034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:44 Heat of formation + Delta-G solvation = 19.668770 kcal Electronic energy + Delta-G solvation = -27466.465199 eV Core-core repulsion = 23803.617238 eV Total energy + Delta-G solvation = -3662.847961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93577 -38.41924 -37.84760 -36.34868 -35.79557 -32.76219 -31.80022 -31.24950 -30.33230 -28.05346 -26.39688 -25.97883 -24.23779 -22.95096 -22.61924 -21.11662 -20.11689 -19.22775 -18.15719 -17.63030 -16.77303 -16.34717 -16.05409 -15.48427 -15.15437 -14.90936 -14.60136 -14.55188 -14.42336 -13.83899 -13.79965 -13.71047 -13.57363 -13.31366 -13.08480 -12.60679 -12.41056 -12.21648 -12.15153 -12.01259 -11.82367 -11.79068 -11.68021 -11.26702 -11.10214 -10.93423 -10.88067 -10.81249 -10.75266 -10.44429 -10.42137 -10.02622 -9.72898 -9.43744 -9.25219 -8.54271 -7.73697 -7.63982 -6.13741 -4.15164 1.20330 1.52099 1.92820 2.47650 2.87664 2.91631 3.01785 3.27142 3.35826 3.40110 4.06431 4.28187 4.36010 4.46384 4.50033 4.62165 4.72326 4.85974 4.95136 5.11403 5.15030 5.23805 5.27199 5.30136 5.32299 5.39861 5.42858 5.46954 5.50863 5.55624 5.64209 5.70145 5.79194 5.87171 5.94395 6.01324 6.10863 6.27994 6.40049 6.79405 6.97543 7.06482 7.55283 7.66446 7.71985 7.79652 7.94011 8.27568 8.90619 9.49907 10.96671 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.004038 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.199433 B = 6932.250980 C = 8534.533019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.111 4.111 5 C -0.064 4.064 6 C 0.110 3.890 7 C -0.216 4.216 8 S -0.028 6.028 9 C 0.500 3.500 10 O -0.452 6.452 11 N -0.524 5.524 12 C 0.257 3.743 13 N -0.532 5.532 14 C 0.193 3.807 15 C -0.508 4.508 16 H 0.064 0.936 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.283 1.283 23 C 0.069 3.931 24 C -0.078 4.078 25 C 0.220 3.780 26 N -0.451 5.451 27 C -0.022 4.022 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.005 0.995 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.129 0.871 44 H 0.078 0.922 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.228 10.246 4.887 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.104 4.104 6 C -0.002 4.002 7 C -0.336 4.336 8 S 0.216 5.784 9 C 0.181 3.819 10 O -0.328 6.328 11 N -0.246 5.246 12 C 0.042 3.958 13 N -0.256 5.256 14 C 0.069 3.931 15 C -0.546 4.546 16 H 0.082 0.918 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.209 1.209 23 C -0.061 4.061 24 C -0.119 4.119 25 C -0.098 4.098 26 N -0.128 5.128 27 C -0.061 4.061 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.022 0.978 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.147 0.853 44 H 0.097 0.903 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.550 9.057 5.797 21.441 hybrid contribution 1.162 -0.181 -1.868 2.207 sum -17.388 8.876 3.929 19.914 Atomic orbital electron populations 1.21810 0.94479 1.02149 1.01918 1.21219 0.95707 0.99805 0.94110 0.90514 1.21595 0.93313 1.01749 0.98260 1.20870 0.95361 1.02532 0.91588 1.20037 0.82582 1.00310 0.97222 1.23378 0.99666 1.17075 0.93496 1.84838 1.01642 1.77174 1.14721 1.21119 0.93149 0.82365 0.85314 1.91006 1.16961 1.49753 1.75126 1.46426 1.07489 1.60623 1.10013 1.22404 0.94247 0.92953 0.86186 1.61995 1.05103 1.18216 1.40262 1.19918 0.81762 0.98880 0.92556 1.21076 0.99481 0.91611 1.42469 0.91760 1.24932 0.96386 0.97542 0.95379 1.69930 1.08058 1.31636 1.43858 0.86452 0.78803 0.84758 0.77515 1.19647 1.21099 1.20932 1.22162 0.95227 1.00781 0.87958 1.20296 0.93557 1.01572 0.96501 1.29096 0.94007 0.93172 0.93501 1.81108 1.11942 1.09326 1.10443 1.19934 0.87009 1.00882 0.98324 0.92409 0.92435 0.92397 0.90634 0.91012 0.89369 0.89569 0.91325 0.88200 0.97780 0.94152 0.92806 0.88483 0.91845 0.88435 0.85335 0.90331 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.18 37.16 0.34 -0.46 16 2 C -0.09 -0.60 2.75 -90.39 -0.25 -0.84 16 3 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 4 C -0.11 -0.83 5.16 -26.66 -0.14 -0.97 16 5 C -0.06 -0.57 4.92 -27.09 -0.13 -0.70 16 6 C 0.11 1.30 6.27 -81.03 -0.51 0.79 16 7 C -0.22 -2.46 6.41 -36.20 -0.23 -2.69 16 8 S -0.03 -0.40 22.96 -107.50 -2.47 -2.86 16 9 C 0.50 8.82 8.26 53.66 0.44 9.26 16 10 O -0.45 -9.83 17.72 5.07 0.09 -9.74 16 11 N -0.52 -7.82 2.86 -119.55 -0.34 -8.17 16 12 C 0.26 3.90 4.99 -63.32 -0.32 3.58 16 13 N -0.53 -9.72 4.74 -239.98 -1.14 -10.86 16 14 C 0.19 4.31 4.50 -4.98 -0.02 4.29 16 15 C -0.51 -13.09 8.68 -34.44 -0.30 -13.39 16 16 H 0.06 1.68 7.27 -52.49 -0.38 1.30 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -24.93 13.29 55.43 0.74 -24.19 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.07 1.05 4.70 -3.82 -0.02 1.03 16 24 C -0.08 -0.99 4.25 -29.52 -0.13 -1.11 16 25 C 0.22 3.03 15.42 -20.81 -0.32 2.71 16 26 N -0.45 -7.11 18.53 42.09 0.78 -6.33 16 27 C -0.02 -0.18 5.60 -27.91 -0.16 -0.34 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.81 4.08 -51.93 -0.21 0.60 16 35 H 0.07 0.80 4.19 -51.93 -0.22 0.58 16 36 H 0.10 1.66 7.46 -51.93 -0.39 1.27 16 37 H 0.00 0.10 5.83 -51.93 -0.30 -0.20 16 38 H 0.04 1.02 7.64 -51.93 -0.40 0.63 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.10 1.69 7.16 -51.93 -0.37 1.32 16 41 H 0.06 0.88 6.37 -51.93 -0.33 0.55 16 42 H 0.10 0.98 5.50 -51.93 -0.29 0.70 16 43 H 0.13 1.85 6.43 -51.93 -0.33 1.51 16 44 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -31.16 370.87 -9.76 -40.92 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -6.15 Total: -3.01 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.83 Total: 2.66 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.04 Total: -49.56 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.47 Total: -2.86 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.16 -9.76 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728040034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.584 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds