Wall clock time and date at job start Tue Mar 31 2020 19:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.58911 * 2 1 4 4 C 1.53178 * 109.59002 * 239.71403 * 2 1 3 5 5 C 1.52952 * 109.58630 * 170.25676 * 4 2 1 6 6 C 1.52349 * 108.86706 * 51.73985 * 5 4 2 7 7 C 1.33304 * 121.75775 * 341.89546 * 6 5 4 8 8 S 1.76561 * 106.53645 * 180.02562 * 7 6 5 9 9 C 1.72217 * 94.66257 * 359.97438 * 8 7 6 10 10 O 1.21832 * 127.07882 * 180.02562 * 9 8 7 11 11 N 1.33886 * 105.83684 * 359.97438 * 9 8 7 12 12 C 1.46498 * 120.93040 * 180.02562 * 11 9 8 13 13 N 1.46901 * 109.46876 * 76.18776 * 12 11 9 14 14 C 1.46903 * 111.00138 * 209.18963 * 13 12 11 15 15 C 1.50698 * 109.46713 * 165.03758 * 14 13 12 16 16 H 1.08002 * 120.00703 * 4.87230 * 15 14 13 17 17 C 1.37884 * 119.99608 * 184.87449 * 15 14 13 18 18 N 1.31514 * 120.00204 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00047 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47036 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46831 * 119.99734 * 19 17 15 22 22 H 1.48493 * 109.47037 * 239.99823 * 19 17 15 23 23 C 1.46908 * 110.99986 * 85.23240 * 13 12 11 24 24 C 1.53006 * 109.46727 * 65.84120 * 23 13 12 25 25 C 1.47200 * 109.46826 * 185.18447 * 24 23 13 26 26 N 6.40220 * 110.14260 * 240.72705 * 2 1 3 27 27 C 1.50352 * 126.49172 * 359.76886 * 7 6 5 28 28 H 1.09001 * 109.46996 * 180.28792 * 1 2 3 29 29 H 1.09002 * 109.47053 * 300.28748 * 1 2 3 30 30 H 1.08996 * 109.47053 * 60.28724 * 1 2 3 31 31 H 1.09001 * 109.44758 * 50.22323 * 4 2 1 32 32 H 1.09004 * 109.43060 * 290.28202 * 4 2 1 33 33 H 1.09000 * 109.57085 * 291.92673 * 5 4 2 34 34 H 1.08991 * 109.67515 * 171.61567 * 5 4 2 35 35 H 1.08998 * 109.47667 * 196.18619 * 12 11 9 36 36 H 1.08999 * 109.46882 * 316.19743 * 12 11 9 37 37 H 1.09000 * 109.46875 * 285.03030 * 14 13 12 38 38 H 1.08993 * 109.46751 * 45.03468 * 14 13 12 39 39 H 0.96993 * 120.00297 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.46981 * 185.83975 * 23 13 12 41 41 H 1.08994 * 109.46989 * 305.84547 * 23 13 12 42 42 H 1.09000 * 109.46797 * 305.17967 * 24 23 13 43 43 H 1.08998 * 109.47089 * 65.18304 * 24 23 13 44 44 H 1.08993 * 109.62108 * 104.59819 * 27 7 6 45 45 H 1.09000 * 109.61856 * 225.15021 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2462 5 6 3.5535 -0.5207 -1.3751 6 6 4.2162 -0.8917 -0.0544 7 6 3.5216 -0.9743 1.0803 8 16 4.6717 -1.4246 2.3420 9 6 6.0278 -1.4802 1.2819 10 8 7.1789 -1.7505 1.5753 11 7 5.5563 -1.1663 0.0687 12 6 6.4451 -1.1160 -1.0947 13 7 6.7549 -2.4833 -1.5336 14 6 8.0788 -2.5455 -2.1673 15 6 8.5194 -3.9830 -2.2699 16 1 7.8484 -4.7760 -1.9741 17 6 9.7792 -4.2859 -2.7413 18 7 10.5961 -3.3204 -3.1019 19 14 10.3257 -6.0677 -2.8678 20 1 9.2297 -6.9558 -2.4039 21 1 10.6550 -6.3853 -4.2806 22 1 11.5266 -6.2784 -2.0202 23 6 5.7147 -2.9950 -2.4360 24 6 5.7190 -2.1820 -3.7322 25 6 4.5984 -2.6115 -4.5845 26 7 3.7346 -2.9390 -5.2431 27 6 2.0482 -0.7250 1.2470 28 1 -0.3633 -1.0277 0.0052 29 1 -0.3633 0.5183 0.8874 30 1 -0.3633 0.5093 -0.8925 31 1 1.5457 -0.3293 -2.1302 32 1 1.8294 -1.7929 -1.1581 33 1 3.7603 0.5242 -1.6064 34 1 3.9443 -1.1550 -2.1706 35 1 5.9534 -0.5771 -1.9046 36 1 7.3682 -0.6032 -0.8248 37 1 8.0248 -2.1100 -3.1651 38 1 8.7961 -1.9876 -1.5656 39 1 11.4822 -3.5335 -3.4339 40 1 5.9139 -4.0422 -2.6633 41 1 4.7407 -2.9064 -1.9549 42 1 5.6117 -1.1231 -3.4972 43 1 6.6593 -2.3438 -4.2594 44 1 1.5266 -1.6755 1.3585 45 1 1.8792 -0.1060 2.1280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728040034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:43 Heat of formation + Delta-G solvation = 0.966556 kcal Electronic energy + Delta-G solvation = -27467.276188 eV Core-core repulsion = 23803.617238 eV Total energy + Delta-G solvation = -3663.658950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.06722 -39.39404 -39.19297 -37.51262 -36.95522 -34.71547 -32.66172 -32.07915 -31.54272 -29.53005 -27.58789 -26.98501 -25.64501 -24.14734 -23.64496 -22.04866 -21.39914 -20.24355 -19.09793 -18.89006 -18.37740 -17.62905 -17.56610 -16.72420 -16.48428 -16.08232 -15.80165 -15.75537 -15.29824 -15.20357 -14.89339 -14.59241 -14.55143 -14.31116 -14.09033 -13.85344 -13.54873 -13.51125 -13.19900 -13.04820 -13.01590 -12.88862 -12.69349 -12.62819 -12.52775 -12.50103 -11.97873 -11.95788 -11.75570 -11.58076 -11.41999 -11.35971 -11.15015 -11.00429 -10.58500 -10.37368 -9.16928 -8.78026 -8.18144 -6.24491 -0.01388 0.47340 0.88146 1.23753 1.39041 1.42942 1.52849 1.74296 1.79643 1.88449 2.41113 2.88349 3.16484 3.26844 3.53699 3.69237 3.86862 3.90971 4.01228 4.07763 4.13789 4.17894 4.21724 4.47994 4.49365 4.54885 4.63975 4.73356 4.80635 4.87372 4.94459 5.00702 5.07341 5.09217 5.21038 5.23434 5.25606 5.29589 5.43199 5.48678 5.62045 5.66389 5.82151 6.03062 6.26051 6.39111 6.52588 6.58156 6.88042 7.43665 8.91583 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.004038 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.199433 B = 6932.250980 C = 8534.533019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.084 0.916 4 C -0.110 4.110 5 C -0.062 4.062 6 C 0.096 3.904 7 C -0.202 4.202 8 S -0.015 6.015 9 C 0.475 3.525 10 O -0.516 6.516 11 N -0.521 5.521 12 C 0.260 3.740 13 N -0.553 5.553 14 C 0.210 3.790 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.952 3.048 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.287 1.287 23 C 0.074 3.926 24 C -0.064 4.064 25 C 0.243 3.757 26 N -0.479 5.479 27 C -0.023 4.023 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.015 0.985 38 H 0.002 0.998 39 H 0.263 0.737 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.133 0.867 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.330 11.258 4.145 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.102 0.898 4 C -0.148 4.148 5 C -0.101 4.101 6 C -0.014 4.014 7 C -0.322 4.322 8 S 0.230 5.770 9 C 0.158 3.842 10 O -0.398 6.398 11 N -0.242 5.242 12 C 0.046 3.954 13 N -0.276 5.276 14 C 0.085 3.915 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.778 3.222 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.213 1.213 23 C -0.055 4.055 24 C -0.105 4.105 25 C -0.075 4.075 26 N -0.158 5.158 27 C -0.063 4.063 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.032 0.968 38 H 0.020 0.980 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.151 0.849 43 H 0.134 0.866 44 H 0.104 0.896 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.730 10.080 5.045 24.480 hybrid contribution 1.987 -0.466 -1.545 2.560 sum -19.743 9.614 3.500 22.237 Atomic orbital electron populations 1.21785 0.93296 1.02328 1.02669 1.21200 0.96534 0.99743 0.92693 0.89751 1.21625 0.92227 1.01515 0.99402 1.21045 0.95976 1.03796 0.89306 1.20602 0.81041 1.00667 0.99079 1.23946 1.00673 1.15572 0.91986 1.84758 1.00834 1.76588 1.14781 1.21661 0.93349 0.82534 0.86700 1.90960 1.19454 1.52597 1.76800 1.46432 1.08754 1.59954 1.09074 1.22370 0.94345 0.91437 0.87258 1.61706 1.04148 1.20707 1.41089 1.19498 0.83208 0.96411 0.92412 1.21402 0.99389 0.93193 1.41447 0.92682 1.25631 0.96719 1.00854 0.95496 1.70019 1.08365 1.33193 1.45043 0.85593 0.78049 0.80848 0.77687 1.19464 1.20159 1.21287 1.22060 0.94914 0.99679 0.88877 1.20161 0.92605 1.03054 0.94726 1.29008 0.93418 0.92199 0.92828 1.81143 1.13005 1.10309 1.11295 1.20142 0.84416 1.01812 0.99887 0.92535 0.91777 0.91639 0.88865 0.91846 0.86962 0.89890 0.87062 0.90394 0.96778 0.97964 0.92790 0.90969 0.89876 0.84933 0.86622 0.89636 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.18 71.98 0.66 -0.35 16 2 C -0.08 -0.76 2.75 -10.64 -0.03 -0.79 16 3 H 0.08 0.72 8.12 -2.39 -0.02 0.70 16 4 C -0.11 -1.19 5.16 30.64 0.16 -1.03 16 5 C -0.06 -0.85 4.92 30.36 0.15 -0.70 16 6 C 0.10 2.04 6.27 41.11 0.26 2.30 16 7 C -0.20 -4.12 6.41 24.46 0.16 -3.96 16 8 S -0.02 -0.41 22.96 -56.49 -1.30 -1.71 16 9 C 0.48 17.23 8.26 129.93 1.07 18.31 16 10 O -0.52 -23.91 17.72 -4.77 -0.08 -24.00 16 11 N -0.52 -15.29 2.86 -650.80 -1.86 -17.15 16 12 C 0.26 7.81 4.99 170.81 0.85 8.66 16 13 N -0.55 -20.37 4.74 -913.15 -4.33 -24.70 16 14 C 0.21 9.66 4.50 85.56 0.38 10.04 16 15 C -0.52 -27.25 8.68 25.60 0.22 -27.03 16 16 H 0.05 2.95 7.27 -2.91 -0.02 2.93 16 17 C 0.01 0.64 5.46 84.66 0.46 1.10 16 18 N -0.93 -52.61 13.29 21.45 0.28 -52.32 16 19 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 23 C 0.07 2.19 4.70 86.30 0.41 2.60 16 24 C -0.06 -1.50 4.25 28.79 0.12 -1.37 16 25 C 0.24 6.12 15.42 89.46 1.38 7.50 16 26 N -0.48 -14.14 18.53 19.99 0.37 -13.77 16 27 C -0.02 -0.30 5.60 29.83 0.17 -0.13 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 32 H 0.06 0.82 8.11 -2.38 -0.02 0.80 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.21 4.08 -2.39 -0.01 1.20 16 35 H 0.11 2.30 4.19 -2.39 -0.01 2.29 16 36 H 0.08 2.70 7.46 -2.39 -0.02 2.68 16 37 H 0.01 0.64 5.83 -2.39 -0.01 0.62 16 38 H 0.00 0.12 7.64 -2.39 -0.02 0.10 16 39 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.07 2.51 7.16 -2.39 -0.02 2.49 16 41 H 0.08 2.13 6.37 -2.39 -0.02 2.12 16 42 H 0.13 2.17 5.50 -2.39 -0.01 2.15 16 43 H 0.12 3.17 6.43 -2.39 -0.02 3.15 16 44 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 45 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.16 370.87 2.55 -68.61 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.02 Total: 4.11 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.42 Total: 15.13 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -5.54 Total: -107.94 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.08 Total: -24.00 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.30 Total: -1.71 kcal Total: -71.16 2.55 -68.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728040034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.576 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds