Wall clock time and date at job start Tue Mar 31 2020 19:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.70750 * 2 1 4 4 C 1.53182 * 109.58516 * 120.36679 * 2 1 3 5 5 C 1.52959 * 109.57557 * 189.60521 * 4 2 1 6 6 C 1.52351 * 108.86770 * 308.25386 * 5 4 2 7 7 C 1.33308 * 121.75838 * 18.09412 * 6 5 4 8 8 S 1.76555 * 106.53699 * 180.27330 * 7 6 5 9 9 C 1.72215 * 94.66459 * 359.63983 * 8 7 6 10 10 O 1.21830 * 127.08592 * 180.02562 * 9 8 7 11 11 N 1.33891 * 105.83093 * 0.34669 * 9 8 7 12 12 C 1.46501 * 120.92270 * 179.76176 * 11 9 8 13 13 N 1.46901 * 109.47411 * 269.97404 * 12 11 9 14 14 C 1.46895 * 111.00461 * 208.84563 * 13 12 11 15 15 C 1.50703 * 109.47319 * 166.99473 * 14 13 12 16 16 H 1.08004 * 119.99591 * 3.00741 * 15 14 13 17 17 C 1.37875 * 119.99865 * 182.99470 * 15 14 13 18 18 N 1.31519 * 119.99496 * 180.02562 * 17 15 14 19 19 Si 1.86791 * 120.00227 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47412 * 89.99554 * 19 17 15 21 21 H 1.48500 * 109.47340 * 209.99259 * 19 17 15 22 22 H 1.48499 * 109.47408 * 329.99938 * 19 17 15 23 23 C 1.46903 * 110.99721 * 84.88853 * 13 12 11 24 24 C 1.53009 * 109.46751 * 64.98651 * 23 13 12 25 25 C 1.47194 * 109.46944 * 178.49353 * 24 23 13 26 26 N 9.37970 * 143.61915 * 319.56503 * 4 1 2 27 27 C 1.50350 * 126.48794 * 0.02562 * 7 6 5 28 28 H 1.08999 * 109.47204 * 180.36222 * 1 2 3 29 29 H 1.08999 * 109.47088 * 300.36875 * 1 2 3 30 30 H 1.09010 * 109.46697 * 60.36191 * 1 2 3 31 31 H 1.08997 * 109.45262 * 309.63270 * 4 2 1 32 32 H 1.09002 * 109.45393 * 69.59481 * 4 2 1 33 33 H 1.08998 * 109.57158 * 68.06442 * 5 4 2 34 34 H 1.08996 * 109.57203 * 188.31336 * 5 4 2 35 35 H 1.08999 * 109.47666 * 29.97567 * 12 11 9 36 36 H 1.09005 * 109.47332 * 149.97871 * 12 11 9 37 37 H 1.08999 * 109.47032 * 287.00403 * 14 13 12 38 38 H 1.09001 * 109.46877 * 46.99531 * 14 13 12 39 39 H 0.97002 * 119.99140 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47297 * 184.98070 * 23 13 12 41 41 H 1.08996 * 109.47653 * 304.98561 * 23 13 12 42 42 H 1.09004 * 109.46900 * 298.49203 * 24 23 13 43 43 H 1.08999 * 109.47109 * 58.49372 * 24 23 13 44 44 H 1.08996 * 109.62040 * 135.15114 * 27 7 6 45 45 H 1.09004 * 109.61826 * 255.69680 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0435 -0.7296 1.2452 5 6 3.5541 -0.5254 1.3724 6 6 4.2145 -0.8971 0.0507 7 6 3.5183 -0.9780 -1.0832 8 16 4.6644 -1.4384 -2.3448 9 6 6.0232 -1.4887 -1.2880 10 8 7.1734 -1.7618 -1.5827 11 7 5.5540 -1.1730 -0.0744 12 6 6.4448 -1.1228 1.0875 13 7 6.4904 -2.4444 1.7272 14 6 6.7570 -2.3237 3.1667 15 6 6.4835 -3.6435 3.8407 16 1 6.1923 -4.5006 3.2516 17 6 6.6053 -3.7569 5.2094 18 7 6.3671 -4.9090 5.7975 19 14 7.1086 -2.2745 6.2284 20 1 5.8958 -1.5270 6.6475 21 1 7.8500 -2.7297 7.4319 22 1 7.9801 -1.3881 5.4159 23 6 7.4848 -3.3093 1.0783 24 6 8.8837 -2.7276 1.2923 25 6 9.8832 -3.6131 0.6731 26 7 10.6547 -4.2966 0.1952 27 6 2.0444 -0.7303 -1.2470 28 1 -0.3633 -1.0276 0.0065 29 1 -0.3633 0.5195 0.8867 30 1 -0.3633 0.5083 -0.8933 31 1 1.5475 -0.3306 2.1300 32 1 1.8276 -1.7944 1.1570 33 1 3.7631 0.5190 1.6039 34 1 3.9427 -1.1607 2.1682 35 1 7.4470 -0.8404 0.7652 36 1 6.0716 -0.3870 1.8000 37 1 7.7997 -2.0459 3.3210 38 1 6.1100 -1.5570 3.5930 39 1 6.4525 -4.9886 6.7605 40 1 7.4363 -4.3080 1.5124 41 1 7.2747 -3.3668 0.0103 42 1 8.9403 -1.7398 0.8348 43 1 9.0834 -2.6452 2.3606 44 1 1.8727 -0.1139 -2.1294 45 1 1.5231 -1.6816 -1.3548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728040035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:47 Heat of formation + Delta-G solvation = 20.682529 kcal Electronic energy + Delta-G solvation = -27381.387364 eV Core-core repulsion = 23718.583363 eV Total energy + Delta-G solvation = -3662.804001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.00276 -38.55264 -37.73315 -36.33235 -35.76731 -32.72649 -31.52556 -31.34959 -30.40442 -28.48014 -26.49113 -26.16506 -23.97587 -22.90527 -22.56835 -21.02314 -20.08224 -19.16896 -18.13962 -17.70816 -17.04791 -16.44474 -16.31182 -15.44099 -15.17443 -14.88314 -14.66849 -14.42760 -14.18724 -14.05437 -13.73373 -13.58189 -13.50473 -13.33549 -13.00523 -12.64780 -12.36303 -12.33797 -12.18406 -11.95127 -11.82158 -11.77418 -11.55454 -11.47956 -11.15314 -10.95649 -10.87851 -10.76829 -10.68652 -10.36084 -10.25114 -10.19303 -9.86254 -9.52855 -9.34560 -8.73483 -7.89476 -7.71544 -6.20575 -4.20592 1.08705 1.47864 1.85676 2.29857 2.89703 3.09153 3.12947 3.14009 3.20054 3.24760 4.16637 4.25258 4.39085 4.56745 4.61651 4.63650 4.78231 4.87918 5.05638 5.09677 5.21833 5.28413 5.34420 5.38201 5.40262 5.45277 5.48778 5.55018 5.59105 5.71511 5.75845 5.82704 5.92704 5.95159 6.01975 6.05832 6.23417 6.26677 6.41930 6.54777 6.63214 6.89785 7.22792 7.40575 7.55775 7.61668 7.90547 8.42269 8.88567 9.38233 10.92130 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.004779 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.644850 B = 5857.087911 C = 8224.658978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.061 4.061 6 C 0.128 3.872 7 C -0.222 4.222 8 S -0.016 6.016 9 C 0.488 3.512 10 O -0.478 6.478 11 N -0.518 5.518 12 C 0.250 3.750 13 N -0.527 5.527 14 C 0.161 3.839 15 C -0.514 4.514 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.892 5.892 19 Si 0.870 3.130 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.069 3.931 24 C -0.069 4.069 25 C 0.226 3.774 26 N -0.453 5.453 27 C -0.021 4.021 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.003 0.997 38 H 0.029 0.971 39 H 0.266 0.734 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 14.325 -9.900 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.101 4.101 6 C 0.018 3.982 7 C -0.341 4.341 8 S 0.229 5.771 9 C 0.170 3.830 10 O -0.359 6.359 11 N -0.239 5.239 12 C 0.035 3.965 13 N -0.250 5.250 14 C 0.035 3.965 15 C -0.552 4.552 16 H 0.100 0.900 17 C -0.129 4.129 18 N -0.530 5.530 19 Si 0.697 3.303 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.060 4.060 24 C -0.110 4.110 25 C -0.092 4.092 26 N -0.131 5.131 27 C -0.061 4.061 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.020 0.980 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.138 0.862 44 H 0.094 0.906 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.627 12.565 -11.991 19.858 hybrid contribution 1.021 1.458 2.348 2.946 sum -8.606 14.023 -9.643 19.071 Atomic orbital electron populations 1.21812 0.94549 1.02186 1.01807 1.21262 0.95682 0.99661 0.94288 0.90649 1.21600 0.93506 1.01859 0.97917 1.20801 0.95100 1.02391 0.91814 1.20122 0.82067 0.98703 0.97326 1.23423 0.99833 1.17586 0.93286 1.84798 1.01193 1.76490 1.14635 1.21280 0.93459 0.82626 0.85677 1.90951 1.17186 1.51861 1.75894 1.46319 1.08176 1.59889 1.09510 1.22441 0.93391 0.94057 0.86585 1.61909 1.47897 1.09514 1.05723 1.20336 0.95034 0.99396 0.81703 1.20893 1.47053 0.95252 0.92035 0.89954 1.24871 0.94839 0.95588 0.97642 1.69880 1.48709 1.24080 1.10374 0.86953 0.79222 0.83507 0.80587 1.20041 1.21104 1.19155 1.22149 0.85335 0.98943 0.99619 1.20103 0.92511 0.96307 1.02100 1.28979 0.93599 0.93756 0.92854 1.81134 1.11330 1.10318 1.10311 1.19962 0.86830 1.00907 0.98385 0.92336 0.92365 0.92618 0.90547 0.90759 0.89826 0.87920 0.90740 0.88174 0.97998 0.95321 0.92433 0.88320 0.90831 0.88379 0.86243 0.90600 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.17 37.16 0.34 -0.54 16 2 C -0.09 -0.65 2.77 -90.32 -0.25 -0.90 16 3 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 4 C -0.11 -0.95 5.16 -26.66 -0.14 -1.09 16 5 C -0.06 -0.63 5.05 -27.08 -0.14 -0.76 16 6 C 0.13 1.57 6.59 -81.03 -0.53 1.04 16 7 C -0.22 -2.54 6.41 -36.20 -0.23 -2.77 16 8 S -0.02 -0.21 22.96 -107.50 -2.47 -2.68 16 9 C 0.49 7.60 7.62 53.66 0.41 8.01 16 10 O -0.48 -8.58 15.91 5.07 0.08 -8.49 16 11 N -0.52 -7.29 2.86 -119.54 -0.34 -7.63 16 12 C 0.25 3.50 4.86 -63.31 -0.31 3.19 16 13 N -0.53 -9.01 4.78 -239.97 -1.15 -10.15 16 14 C 0.16 3.11 3.54 -4.98 -0.02 3.10 16 15 C -0.51 -12.68 9.17 -34.44 -0.32 -13.00 16 16 H 0.08 2.30 7.44 -52.48 -0.39 1.90 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 18 N -0.89 -25.34 13.96 55.43 0.77 -24.57 16 19 Si 0.87 18.95 27.41 -169.99 -4.66 14.29 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -5.38 6.63 56.52 0.37 -5.01 16 23 C 0.07 1.20 5.04 -3.82 -0.02 1.18 16 24 C -0.07 -1.05 5.11 -29.52 -0.15 -1.20 16 25 C 0.23 3.95 15.43 -20.76 -0.32 3.63 16 26 N -0.45 -8.86 18.54 42.16 0.78 -8.08 16 27 C -0.02 -0.18 5.59 -27.85 -0.16 -0.34 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.27 7.77 -51.93 -0.40 0.86 16 35 H 0.07 1.00 5.40 -51.93 -0.28 0.72 16 36 H 0.10 1.20 6.55 -51.93 -0.34 0.86 16 37 H 0.00 0.05 5.07 -51.93 -0.26 -0.22 16 38 H 0.03 0.54 6.97 -51.93 -0.36 0.17 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.10 1.93 7.03 -51.93 -0.37 1.57 16 41 H 0.07 1.32 5.75 -51.93 -0.30 1.02 16 42 H 0.10 1.32 6.24 -51.93 -0.32 0.99 16 43 H 0.12 1.84 6.12 -51.93 -0.32 1.52 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -30.09 370.03 -9.63 -39.72 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.31 Total: 0.67 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.93 Total: 1.35 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.07 Total: -50.43 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.49 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.66 Total: 14.29 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.47 Total: -2.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.09 -9.63 -39.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728040035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.403 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds