Wall clock time and date at job start Tue Mar 31 2020 19:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.70750 * 2 1 4 4 C 1.53182 * 109.58516 * 120.36679 * 2 1 3 5 5 C 1.52959 * 109.57557 * 189.60521 * 4 2 1 6 6 C 1.52351 * 108.86770 * 308.25386 * 5 4 2 7 7 C 1.33308 * 121.75838 * 18.09412 * 6 5 4 8 8 S 1.76555 * 106.53699 * 180.27330 * 7 6 5 9 9 C 1.72215 * 94.66459 * 359.63983 * 8 7 6 10 10 O 1.21830 * 127.08592 * 180.02562 * 9 8 7 11 11 N 1.33891 * 105.83093 * 0.34669 * 9 8 7 12 12 C 1.46501 * 120.92270 * 179.76176 * 11 9 8 13 13 N 1.46901 * 109.47411 * 269.97404 * 12 11 9 14 14 C 1.46895 * 111.00461 * 208.84563 * 13 12 11 15 15 C 1.50703 * 109.47319 * 166.99473 * 14 13 12 16 16 H 1.08004 * 119.99591 * 3.00741 * 15 14 13 17 17 C 1.37875 * 119.99865 * 182.99470 * 15 14 13 18 18 N 1.31519 * 119.99496 * 180.02562 * 17 15 14 19 19 Si 1.86791 * 120.00227 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47412 * 89.99554 * 19 17 15 21 21 H 1.48500 * 109.47340 * 209.99259 * 19 17 15 22 22 H 1.48499 * 109.47408 * 329.99938 * 19 17 15 23 23 C 1.46903 * 110.99721 * 84.88853 * 13 12 11 24 24 C 1.53009 * 109.46751 * 64.98651 * 23 13 12 25 25 C 1.47194 * 109.46944 * 178.49353 * 24 23 13 26 26 N 9.37970 * 143.61915 * 319.56503 * 4 1 2 27 27 C 1.50350 * 126.48794 * 0.02562 * 7 6 5 28 28 H 1.08999 * 109.47204 * 180.36222 * 1 2 3 29 29 H 1.08999 * 109.47088 * 300.36875 * 1 2 3 30 30 H 1.09010 * 109.46697 * 60.36191 * 1 2 3 31 31 H 1.08997 * 109.45262 * 309.63270 * 4 2 1 32 32 H 1.09002 * 109.45393 * 69.59481 * 4 2 1 33 33 H 1.08998 * 109.57158 * 68.06442 * 5 4 2 34 34 H 1.08996 * 109.57203 * 188.31336 * 5 4 2 35 35 H 1.08999 * 109.47666 * 29.97567 * 12 11 9 36 36 H 1.09005 * 109.47332 * 149.97871 * 12 11 9 37 37 H 1.08999 * 109.47032 * 287.00403 * 14 13 12 38 38 H 1.09001 * 109.46877 * 46.99531 * 14 13 12 39 39 H 0.97002 * 119.99140 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47297 * 184.98070 * 23 13 12 41 41 H 1.08996 * 109.47653 * 304.98561 * 23 13 12 42 42 H 1.09004 * 109.46900 * 298.49203 * 24 23 13 43 43 H 1.08999 * 109.47109 * 58.49372 * 24 23 13 44 44 H 1.08996 * 109.62040 * 135.15114 * 27 7 6 45 45 H 1.09004 * 109.61826 * 255.69680 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0435 -0.7296 1.2452 5 6 3.5541 -0.5254 1.3724 6 6 4.2145 -0.8971 0.0507 7 6 3.5183 -0.9780 -1.0832 8 16 4.6644 -1.4384 -2.3448 9 6 6.0232 -1.4887 -1.2880 10 8 7.1734 -1.7618 -1.5827 11 7 5.5540 -1.1730 -0.0744 12 6 6.4448 -1.1228 1.0875 13 7 6.4904 -2.4444 1.7272 14 6 6.7570 -2.3237 3.1667 15 6 6.4835 -3.6435 3.8407 16 1 6.1923 -4.5006 3.2516 17 6 6.6053 -3.7569 5.2094 18 7 6.3671 -4.9090 5.7975 19 14 7.1086 -2.2745 6.2284 20 1 5.8958 -1.5270 6.6475 21 1 7.8500 -2.7297 7.4319 22 1 7.9801 -1.3881 5.4159 23 6 7.4848 -3.3093 1.0783 24 6 8.8837 -2.7276 1.2923 25 6 9.8832 -3.6131 0.6731 26 7 10.6547 -4.2966 0.1952 27 6 2.0444 -0.7303 -1.2470 28 1 -0.3633 -1.0276 0.0065 29 1 -0.3633 0.5195 0.8867 30 1 -0.3633 0.5083 -0.8933 31 1 1.5475 -0.3306 2.1300 32 1 1.8276 -1.7944 1.1570 33 1 3.7631 0.5190 1.6039 34 1 3.9427 -1.1607 2.1682 35 1 7.4470 -0.8404 0.7652 36 1 6.0716 -0.3870 1.8000 37 1 7.7997 -2.0459 3.3210 38 1 6.1100 -1.5570 3.5930 39 1 6.4525 -4.9886 6.7605 40 1 7.4363 -4.3080 1.5124 41 1 7.2747 -3.3668 0.0103 42 1 8.9403 -1.7398 0.8348 43 1 9.0834 -2.6452 2.3606 44 1 1.8727 -0.1139 -2.1294 45 1 1.5231 -1.6816 -1.3548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728040035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:46 Heat of formation + Delta-G solvation = 2.632826 kcal Electronic energy + Delta-G solvation = -27382.170058 eV Core-core repulsion = 23718.583363 eV Total energy + Delta-G solvation = -3663.586695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07232 -39.50320 -39.08240 -37.54803 -36.99026 -34.61883 -32.48882 -32.20545 -31.68240 -29.88575 -27.72227 -27.00188 -25.38210 -24.03557 -23.54529 -22.00628 -21.34524 -20.16214 -19.22177 -19.02727 -18.67176 -17.68158 -17.56056 -16.67490 -16.44363 -15.96243 -15.77364 -15.74238 -15.47156 -15.12125 -14.96398 -14.54652 -14.48822 -14.42637 -14.10760 -13.83733 -13.77665 -13.60880 -13.22446 -13.09965 -13.05504 -12.75762 -12.68439 -12.52025 -12.49349 -12.34551 -12.07644 -11.82582 -11.65187 -11.56792 -11.44687 -11.36106 -11.10905 -11.00386 -10.68739 -10.38898 -9.24903 -8.76323 -8.18284 -6.22708 -0.00483 0.45855 0.86350 1.20731 1.45552 1.47905 1.56613 1.64174 1.70817 1.86609 2.43373 2.81958 3.16914 3.22473 3.57128 3.80649 3.91942 3.98910 4.00049 4.08474 4.11001 4.17404 4.25683 4.41595 4.54396 4.61428 4.63826 4.76920 4.82546 4.90366 4.93880 4.99296 5.03003 5.08737 5.13935 5.16159 5.27617 5.31192 5.44334 5.51569 5.55716 5.65736 5.83560 5.90828 6.10357 6.34178 6.49285 6.60119 6.85668 7.40454 8.98486 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.004779 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.644850 B = 5857.087911 C = 8224.658978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.086 0.914 4 C -0.110 4.110 5 C -0.057 4.057 6 C 0.109 3.891 7 C -0.211 4.211 8 S -0.012 6.012 9 C 0.471 3.529 10 O -0.513 6.513 11 N -0.518 5.518 12 C 0.249 3.751 13 N -0.538 5.538 14 C 0.169 3.831 15 C -0.509 4.509 16 H 0.031 0.969 17 C 0.009 3.991 18 N -0.953 5.953 19 Si 0.940 3.060 20 H -0.262 1.262 21 H -0.299 1.299 22 H -0.230 1.230 23 C 0.078 3.922 24 C -0.058 4.058 25 C 0.241 3.759 26 N -0.492 5.492 27 C -0.023 4.023 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.021 0.979 38 H 0.051 0.949 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 18.253 -9.807 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.104 0.896 4 C -0.148 4.148 5 C -0.097 4.097 6 C 0.000 4.000 7 C -0.330 4.330 8 S 0.233 5.767 9 C 0.154 3.846 10 O -0.397 6.397 11 N -0.238 5.238 12 C 0.035 3.965 13 N -0.262 5.262 14 C 0.043 3.957 15 C -0.547 4.547 16 H 0.049 0.951 17 C -0.188 4.188 18 N -0.594 5.594 19 Si 0.763 3.237 20 H -0.187 1.187 21 H -0.225 1.225 22 H -0.153 1.153 23 C -0.052 4.052 24 C -0.099 4.099 25 C -0.076 4.076 26 N -0.170 5.170 27 C -0.063 4.063 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.146 0.854 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.110 0.890 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.780 16.524 -11.936 23.059 hybrid contribution 1.223 0.148 2.198 2.519 sum -9.557 16.672 -9.738 21.543 Atomic orbital electron populations 1.21790 0.93386 1.02232 1.02684 1.21225 0.96497 0.99652 0.92655 0.89580 1.21618 0.92625 1.01161 0.99393 1.20869 0.95712 1.03312 0.89778 1.20563 0.81395 0.99439 0.98600 1.23911 1.00782 1.16107 0.92201 1.84777 1.00920 1.76118 1.14847 1.21596 0.93638 0.82850 0.86527 1.90919 1.18507 1.53459 1.76838 1.46336 1.08966 1.59494 1.09018 1.22582 0.94355 0.92516 0.87011 1.61713 1.48014 1.11598 1.04883 1.20153 0.96335 0.96635 0.82623 1.21138 1.45411 0.96249 0.91917 0.95090 1.25826 0.95059 0.98745 0.99176 1.70080 1.51543 1.27247 1.10545 0.85832 0.79641 0.79837 0.78368 1.18732 1.22536 1.15257 1.21888 0.86868 0.97720 0.98705 1.20138 0.90353 0.96909 1.02523 1.29346 0.93137 0.93128 0.91944 1.81141 1.12726 1.11486 1.11671 1.20149 0.84669 1.01595 0.99859 0.92741 0.91632 0.91644 0.89007 0.92468 0.87282 0.90043 0.89742 0.85374 0.96137 0.93070 0.92786 0.91800 0.91625 0.85485 0.85492 0.89021 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.17 71.98 0.66 -0.61 16 2 C -0.08 -0.91 2.77 -10.60 -0.03 -0.94 16 3 H 0.09 0.85 8.12 -2.39 -0.02 0.83 16 4 C -0.11 -1.60 5.16 30.64 0.16 -1.44 16 5 C -0.06 -1.01 5.05 30.37 0.15 -0.86 16 6 C 0.11 2.45 6.59 41.11 0.27 2.72 16 7 C -0.21 -4.40 6.41 24.46 0.16 -4.24 16 8 S -0.01 -0.31 22.96 -56.49 -1.30 -1.60 16 9 C 0.47 14.36 7.62 129.93 0.99 15.35 16 10 O -0.51 -18.34 15.91 -4.77 -0.08 -18.42 16 11 N -0.52 -13.74 2.86 -650.78 -1.86 -15.60 16 12 C 0.25 6.35 4.86 170.81 0.83 7.18 16 13 N -0.54 -17.82 4.78 -913.14 -4.36 -22.18 16 14 C 0.17 6.17 3.54 85.56 0.30 6.47 16 15 C -0.51 -25.45 9.17 25.60 0.23 -25.22 16 16 H 0.03 1.83 7.44 -2.91 -0.02 1.80 16 17 C 0.01 0.47 5.47 84.65 0.46 0.93 16 18 N -0.95 -56.15 13.96 21.45 0.30 -55.85 16 19 Si 0.94 37.78 27.41 68.60 1.88 39.66 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.30 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.23 -7.82 6.63 99.48 0.66 -7.16 16 23 C 0.08 2.73 5.04 86.31 0.44 3.17 16 24 C -0.06 -1.70 5.11 28.79 0.15 -1.55 16 25 C 0.24 8.38 15.43 89.44 1.38 9.77 16 26 N -0.49 -19.39 18.54 20.00 0.37 -19.02 16 27 C -0.02 -0.33 5.59 29.87 0.17 -0.17 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 32 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.83 7.77 -2.39 -0.02 1.81 16 35 H 0.08 2.01 5.40 -2.39 -0.01 1.99 16 36 H 0.13 2.54 6.55 -2.38 -0.02 2.53 16 37 H 0.02 0.71 5.07 -2.39 -0.01 0.70 16 38 H 0.05 1.70 6.97 -2.39 -0.02 1.68 16 39 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.06 2.65 7.03 -2.39 -0.02 2.63 16 41 H 0.07 2.41 5.75 -2.39 -0.01 2.40 16 42 H 0.13 3.06 6.24 -2.39 -0.01 3.05 16 43 H 0.13 3.61 6.12 -2.39 -0.01 3.59 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.17 8.10 -2.38 -0.02 1.15 16 Total: -1.00 -69.12 370.03 2.25 -66.87 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.97 Total: 15.60 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.32 Total: 10.54 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -5.55 Total: -112.65 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.08 Total: -18.42 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.88 Total: 39.66 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.30 Total: -1.60 kcal Total: -69.12 2.25 -66.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728040035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.502 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds