Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 N 1.46496 * 109.47074 * 180.02562 * 3 2 1 5 5 C 1.34786 * 119.99741 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99785 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99750 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.47151 * 304.99524 * 7 5 4 9 9 C 1.53000 * 109.47170 * 64.99970 * 7 5 4 10 10 O 1.45198 * 109.47123 * 185.00117 * 7 5 4 11 11 C 1.34227 * 117.00330 * 150.00065 * 10 7 5 12 12 O 1.20821 * 120.00095 * 359.97438 * 11 10 7 13 13 C 1.50696 * 120.00186 * 180.02562 * 11 10 7 14 14 C 1.50703 * 109.47355 * 179.97438 * 13 11 10 15 15 C 1.38304 * 119.92559 * 269.72434 * 14 13 11 16 16 C 1.38106 * 120.06237 * 179.72258 * 15 14 13 17 17 C 1.38880 * 119.93055 * 0.57021 * 16 15 14 18 18 O 1.35750 * 120.06792 * 179.67876 * 17 16 15 19 19 C 1.34829 * 116.99780 * 174.48657 * 18 17 16 20 20 H 1.07994 * 120.00347 * 5.06421 * 19 18 17 21 21 C 1.38660 * 119.99602 * 185.05914 * 19 18 17 22 22 N 1.31563 * 119.99407 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00358 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46697 * 89.99737 * 23 21 19 25 25 H 1.48495 * 109.47209 * 209.99861 * 23 21 19 26 26 H 1.48496 * 109.47224 * 330.00461 * 23 21 19 27 27 C 1.38880 * 119.86416 * 359.70456 * 17 16 15 28 28 C 1.38099 * 119.92799 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.47314 * 60.00487 * 1 2 3 30 30 H 1.09011 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47070 * 300.00045 * 1 2 3 32 32 H 1.08999 * 109.47070 * 239.99955 * 2 1 3 33 33 H 1.08993 * 109.47394 * 119.99995 * 2 1 3 34 34 H 1.08999 * 109.47217 * 60.00045 * 3 2 1 35 35 H 1.09006 * 109.46967 * 299.99910 * 3 2 1 36 36 H 0.96996 * 120.00330 * 359.97438 * 4 3 2 37 37 H 1.08995 * 109.47258 * 60.00377 * 9 7 5 38 38 H 1.09010 * 109.46737 * 180.02562 * 9 7 5 39 39 H 1.08998 * 109.47198 * 299.99803 * 9 7 5 40 40 H 1.08998 * 109.47165 * 299.99711 * 13 11 10 41 41 H 1.08999 * 109.47298 * 59.99655 * 13 11 10 42 42 H 1.07998 * 119.97247 * 359.97438 * 15 14 13 43 43 H 1.08004 * 120.03165 * 180.27547 * 16 15 14 44 44 H 0.96998 * 119.99315 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.03498 * 179.97438 * 27 17 16 46 46 H 1.08003 * 119.96773 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6098 -0.0012 6 8 3.5723 3.6601 -0.0018 7 6 5.6858 2.6098 -0.0013 8 1 6.0491 2.0209 0.8409 9 6 6.1957 1.9995 -1.3083 10 8 6.1698 3.9736 0.1173 11 6 7.3494 4.1503 0.7328 12 8 7.9573 3.1970 1.1589 13 6 7.9151 5.5378 0.8936 14 6 9.2374 5.4610 1.6126 15 6 9.2778 5.5404 2.9928 16 6 10.4874 5.4646 3.6549 17 6 11.6649 5.3205 2.9327 18 8 12.8560 5.2523 3.5804 19 6 13.9470 4.9981 2.8301 20 1 13.8616 4.9404 1.7550 21 6 15.1787 4.8110 3.4387 22 7 16.2434 4.5635 2.7065 23 14 15.3264 4.9102 5.2982 24 1 15.1106 3.5630 5.8844 25 1 16.6814 5.3970 5.6619 26 1 14.3046 5.8493 5.8265 27 6 11.6214 5.2469 1.5466 28 6 10.4082 5.3176 0.8906 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9900 0.6025 -0.0006 37 1 5.8325 2.5885 -2.1504 38 1 7.2858 1.9991 -1.3081 39 1 5.8325 0.9757 -1.3974 40 1 8.0610 5.9867 -0.0889 41 1 7.2220 6.1480 1.4726 42 1 8.3623 5.6576 3.5536 43 1 10.5180 5.5221 4.7330 44 1 17.1049 4.4322 3.1324 45 1 12.5353 5.1352 0.9822 46 1 10.3735 5.2600 -0.1873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732364352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = -134.324301 kcal Electronic energy + Delta-G solvation = -27519.410608 eV Core-core repulsion = 23374.839384 eV Total energy + Delta-G solvation = -4144.571224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92488 -39.81044 -39.10282 -37.12986 -36.39127 -36.01652 -33.51165 -32.58599 -32.09304 -31.35742 -30.27200 -27.22711 -26.96281 -25.20657 -24.48084 -22.27216 -22.13703 -21.73589 -20.57892 -20.14562 -17.95379 -17.92867 -17.80472 -17.26310 -16.55109 -16.35178 -16.09497 -15.72892 -15.07512 -14.84651 -14.68142 -14.31674 -14.08467 -13.80345 -13.72375 -13.54321 -13.43165 -13.24216 -12.85608 -12.71651 -12.69007 -12.61081 -12.51021 -12.22070 -11.96435 -11.72023 -11.69677 -11.44835 -11.34466 -11.04209 -10.95874 -10.79544 -10.70092 -10.41017 -10.16925 -10.04060 -9.56162 -9.40432 -8.87951 -8.27104 -7.36163 -6.43142 -4.09565 1.88977 2.13035 2.17810 2.26297 2.36483 3.08879 3.21767 3.25636 3.39889 4.15948 4.22816 4.29737 4.40598 4.41603 4.50335 4.62202 4.67698 4.80321 4.83861 5.04351 5.06340 5.08263 5.09549 5.19288 5.21565 5.29117 5.34884 5.45961 5.55581 5.57564 5.64450 5.64689 5.68486 5.72797 5.92778 6.10735 6.28200 6.32465 6.54389 6.76458 6.96350 6.99459 7.17802 7.26978 7.58354 7.74056 7.78410 7.82680 8.02025 8.91964 9.53886 10.64331 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024967 B = 0.001794 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.229679 B =15604.546476 C =15754.899202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.119 3.881 4 N -0.729 5.729 5 C 0.518 3.482 6 O -0.516 6.516 7 C 0.068 3.932 8 H 0.110 0.890 9 C -0.164 4.164 10 O -0.335 6.335 11 C 0.456 3.544 12 O -0.490 6.490 13 C -0.050 4.050 14 C -0.175 4.175 15 C -0.058 4.058 16 C -0.191 4.191 17 C 0.165 3.835 18 O -0.215 6.215 19 C -0.390 4.390 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.220 4.220 28 C -0.054 4.054 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.280 0.720 45 H 0.134 0.866 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.355 -7.562 -7.241 29.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.005 4.005 4 N -0.384 5.384 5 C 0.303 3.697 6 O -0.390 6.390 7 C 0.009 3.991 8 H 0.128 0.872 9 C -0.222 4.222 10 O -0.251 6.251 11 C 0.299 3.701 12 O -0.375 6.375 13 C -0.088 4.088 14 C -0.176 4.176 15 C -0.077 4.077 16 C -0.211 4.211 17 C 0.113 3.887 18 O -0.120 6.120 19 C -0.465 4.465 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.239 4.239 28 C -0.072 4.072 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.237 0.763 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.152 0.848 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -27.308 -7.104 -6.877 29.043 hybrid contribution 0.561 -0.696 0.615 1.085 sum -26.748 -7.801 -6.263 28.557 Atomic orbital electron populations 1.21680 0.94363 1.02304 1.02446 1.21747 0.97163 0.95607 1.02929 1.21450 0.78807 0.97427 1.02766 1.45894 1.07585 1.08352 1.76572 1.20229 0.88950 0.84083 0.76433 1.90746 1.69825 1.31051 1.47359 1.22349 0.91234 0.83806 1.01686 0.87200 1.22147 1.03440 1.00988 0.95611 1.86668 1.37550 1.29237 1.71680 1.24342 0.78306 0.93591 0.73893 1.90697 1.58773 1.42902 1.45157 1.20120 0.95519 0.89787 1.03353 1.18707 0.92233 1.13090 0.93561 1.20443 0.96401 0.97731 0.93083 1.20160 0.90239 1.11309 0.99355 1.19145 0.86030 0.92639 0.90935 1.83572 1.12869 1.78403 1.37176 1.20783 0.83733 1.49433 0.92582 0.87563 1.24475 0.93769 0.95457 1.00267 1.69650 0.99597 1.45940 1.36384 0.86176 0.77713 0.79423 0.83572 1.19873 1.20750 1.18340 1.21228 0.98595 1.09820 0.94288 1.20591 0.91673 0.96543 0.98430 0.92278 0.92057 0.92252 0.91158 0.91131 0.91242 0.91223 0.76323 0.90836 0.90221 0.90356 0.87453 0.87449 0.86965 0.86393 0.91025 0.84814 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 37.16 0.37 -0.15 16 2 C -0.14 -0.50 6.05 -26.73 -0.16 -0.66 16 3 C 0.12 0.73 5.67 -4.04 -0.02 0.71 16 4 N -0.73 -5.00 5.52 -60.29 -0.33 -5.33 16 5 C 0.52 5.54 7.18 -10.98 -0.08 5.46 16 6 O -0.52 -7.63 16.51 -14.05 -0.23 -7.86 16 7 C 0.07 0.72 2.97 -27.88 -0.08 0.64 16 8 H 0.11 1.13 7.16 -51.93 -0.37 0.76 16 9 C -0.16 -1.33 9.50 37.16 0.35 -0.97 16 10 O -0.33 -4.42 9.42 -45.88 -0.43 -4.86 16 11 C 0.46 6.49 7.92 36.00 0.29 6.77 16 12 O -0.49 -8.37 15.25 -18.75 -0.29 -8.66 16 13 C -0.05 -0.64 5.94 -29.04 -0.17 -0.82 16 14 C -0.17 -2.90 4.38 -104.57 -0.46 -3.36 16 15 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 16 16 C -0.19 -3.84 9.99 -39.39 -0.39 -4.24 16 17 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 18 O -0.22 -5.72 8.59 0.05 0.00 -5.72 16 19 C -0.39 -11.02 9.95 30.89 0.31 -10.71 16 20 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 21 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 22 N -0.88 -25.34 13.96 55.48 0.77 -24.57 16 23 Si 0.91 21.73 28.62 -169.99 -4.86 16.86 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.26 -6.24 7.11 56.52 0.40 -5.83 16 27 C -0.22 -4.78 9.17 -39.39 -0.36 -5.14 16 28 C -0.05 -0.98 9.69 -39.61 -0.38 -1.37 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.18 8.14 -51.92 -0.42 -0.24 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.40 1.63 8.25 -40.82 -0.34 1.29 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 39 H 0.08 0.40 7.92 -51.93 -0.41 -0.01 16 40 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 41 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 44 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.13 3.03 5.64 -52.49 -0.30 2.74 16 46 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -34.54 395.69 -7.70 -42.24 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.75 Total: 1.89 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.54 Total: -9.95 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.44 Total: -29.90 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.95 Total: -27.10 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.54 -7.70 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732364352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.088 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds