Wall clock time and date at job start Tue Mar 31 2020 18:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 N 1.46496 * 109.47074 * 180.02562 * 3 2 1 5 5 C 1.34786 * 119.99741 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99785 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99750 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.47151 * 304.99524 * 7 5 4 9 9 C 1.53000 * 109.47170 * 64.99970 * 7 5 4 10 10 O 1.45198 * 109.47123 * 185.00117 * 7 5 4 11 11 C 1.34227 * 117.00330 * 150.00065 * 10 7 5 12 12 O 1.20821 * 120.00095 * 359.97438 * 11 10 7 13 13 C 1.50696 * 120.00186 * 180.02562 * 11 10 7 14 14 C 1.50703 * 109.47355 * 179.97438 * 13 11 10 15 15 C 1.38304 * 119.92559 * 269.72434 * 14 13 11 16 16 C 1.38106 * 120.06237 * 179.72258 * 15 14 13 17 17 C 1.38880 * 119.93055 * 0.57021 * 16 15 14 18 18 O 1.35750 * 120.06792 * 179.67876 * 17 16 15 19 19 C 1.34829 * 116.99780 * 174.48657 * 18 17 16 20 20 H 1.07994 * 120.00347 * 5.06421 * 19 18 17 21 21 C 1.38660 * 119.99602 * 185.05914 * 19 18 17 22 22 N 1.31563 * 119.99407 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00358 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46697 * 89.99737 * 23 21 19 25 25 H 1.48495 * 109.47209 * 209.99861 * 23 21 19 26 26 H 1.48496 * 109.47224 * 330.00461 * 23 21 19 27 27 C 1.38880 * 119.86416 * 359.70456 * 17 16 15 28 28 C 1.38099 * 119.92799 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.47314 * 60.00487 * 1 2 3 30 30 H 1.09011 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47070 * 300.00045 * 1 2 3 32 32 H 1.08999 * 109.47070 * 239.99955 * 2 1 3 33 33 H 1.08993 * 109.47394 * 119.99995 * 2 1 3 34 34 H 1.08999 * 109.47217 * 60.00045 * 3 2 1 35 35 H 1.09006 * 109.46967 * 299.99910 * 3 2 1 36 36 H 0.96996 * 120.00330 * 359.97438 * 4 3 2 37 37 H 1.08995 * 109.47258 * 60.00377 * 9 7 5 38 38 H 1.09010 * 109.46737 * 180.02562 * 9 7 5 39 39 H 1.08998 * 109.47198 * 299.99803 * 9 7 5 40 40 H 1.08998 * 109.47165 * 299.99711 * 13 11 10 41 41 H 1.08999 * 109.47298 * 59.99655 * 13 11 10 42 42 H 1.07998 * 119.97247 * 359.97438 * 15 14 13 43 43 H 1.08004 * 120.03165 * 180.27547 * 16 15 14 44 44 H 0.96998 * 119.99315 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.03498 * 179.97438 * 27 17 16 46 46 H 1.08003 * 119.96773 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6098 -0.0012 6 8 3.5723 3.6601 -0.0018 7 6 5.6858 2.6098 -0.0013 8 1 6.0491 2.0209 0.8409 9 6 6.1957 1.9995 -1.3083 10 8 6.1698 3.9736 0.1173 11 6 7.3494 4.1503 0.7328 12 8 7.9573 3.1970 1.1589 13 6 7.9151 5.5378 0.8936 14 6 9.2374 5.4610 1.6126 15 6 9.2778 5.5404 2.9928 16 6 10.4874 5.4646 3.6549 17 6 11.6649 5.3205 2.9327 18 8 12.8560 5.2523 3.5804 19 6 13.9470 4.9981 2.8301 20 1 13.8616 4.9404 1.7550 21 6 15.1787 4.8110 3.4387 22 7 16.2434 4.5635 2.7065 23 14 15.3264 4.9102 5.2982 24 1 15.1106 3.5630 5.8844 25 1 16.6814 5.3970 5.6619 26 1 14.3046 5.8493 5.8265 27 6 11.6214 5.2469 1.5466 28 6 10.4082 5.3176 0.8906 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9900 0.6025 -0.0006 37 1 5.8325 2.5885 -2.1504 38 1 7.2858 1.9991 -1.3081 39 1 5.8325 0.9757 -1.3974 40 1 8.0610 5.9867 -0.0889 41 1 7.2220 6.1480 1.4726 42 1 8.3623 5.6576 3.5536 43 1 10.5180 5.5221 4.7330 44 1 17.1049 4.4322 3.1324 45 1 12.5353 5.1352 0.9822 46 1 10.3735 5.2600 -0.1873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732364352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:32 Heat of formation + Delta-G solvation = -155.693216 kcal Electronic energy + Delta-G solvation = -27520.337234 eV Core-core repulsion = 23374.839384 eV Total energy + Delta-G solvation = -4145.497850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.94449 -40.96911 -40.53470 -38.61324 -37.50291 -36.77222 -34.54434 -34.17296 -33.25107 -32.32425 -31.83640 -28.71027 -27.48938 -26.97745 -25.35703 -23.74297 -23.05249 -22.59137 -21.64329 -21.26045 -19.83831 -19.14914 -18.92408 -18.63744 -17.44944 -17.23172 -16.80856 -16.75342 -16.51644 -16.14612 -15.79551 -15.71194 -15.58221 -15.23340 -15.06137 -14.53149 -14.38871 -14.21962 -14.08132 -14.04039 -13.85766 -13.45212 -13.38534 -13.08521 -12.96895 -12.95034 -12.70319 -12.57098 -12.45280 -12.38390 -12.05031 -11.95859 -11.93896 -11.75993 -11.58749 -11.29596 -10.93276 -10.89634 -10.23598 -9.81789 -9.04987 -8.50881 -6.23570 0.49581 0.56253 1.16297 1.30833 1.32230 1.37552 1.38057 1.51535 2.26060 2.27545 2.77100 3.03587 3.15566 3.47432 3.67643 3.76766 3.85026 3.89604 3.99215 4.00155 4.07277 4.13772 4.33904 4.39490 4.53673 4.59477 4.60647 4.65537 4.65838 4.73658 4.77327 4.85027 4.94432 5.03605 5.15785 5.21393 5.24123 5.24256 5.29993 5.36828 5.44038 5.53878 5.68911 5.77749 5.89120 6.21341 6.33844 6.73125 6.83280 7.03974 7.56961 8.60635 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024967 B = 0.001794 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.229679 B =15604.546476 C =15754.899202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.117 3.883 4 N -0.710 5.710 5 C 0.519 3.481 6 O -0.563 6.563 7 C 0.063 3.937 8 H 0.113 0.887 9 C -0.160 4.160 10 O -0.341 6.341 11 C 0.464 3.536 12 O -0.526 6.526 13 C -0.051 4.051 14 C -0.150 4.150 15 C -0.055 4.055 16 C -0.193 4.193 17 C 0.123 3.877 18 O -0.244 6.244 19 C -0.401 4.401 20 H 0.081 0.919 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.263 1.263 27 C -0.238 4.238 28 C -0.057 4.057 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.418 0.582 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.154 0.846 43 H 0.130 0.870 44 H 0.285 0.715 45 H 0.110 0.890 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.674 -8.166 -7.145 32.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.006 4.006 4 N -0.364 5.364 5 C 0.305 3.695 6 O -0.441 6.441 7 C 0.004 3.996 8 H 0.131 0.869 9 C -0.217 4.217 10 O -0.257 6.257 11 C 0.308 3.692 12 O -0.414 6.414 13 C -0.088 4.088 14 C -0.151 4.151 15 C -0.073 4.073 16 C -0.212 4.212 17 C 0.074 3.926 18 O -0.152 6.152 19 C -0.477 4.477 20 H 0.099 0.901 21 C -0.188 4.188 22 N -0.562 5.562 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.190 1.190 26 H -0.187 1.187 27 C -0.257 4.257 28 C -0.075 4.075 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.256 0.744 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.148 0.852 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -30.685 -7.745 -6.809 32.371 hybrid contribution 1.169 -0.538 0.395 1.346 sum -29.515 -8.283 -6.414 31.320 Atomic orbital electron populations 1.21699 0.94198 1.02809 1.02245 1.21701 0.97187 0.93760 1.03887 1.21541 0.78120 0.99103 1.01881 1.45807 1.08027 1.08050 1.74566 1.20305 0.88951 0.84326 0.75953 1.90727 1.70572 1.32784 1.50017 1.22621 0.91188 0.82672 1.03094 0.86900 1.22163 1.02648 1.02714 0.94166 1.86636 1.36916 1.30997 1.71159 1.24398 0.78211 0.93508 0.73085 1.90703 1.59747 1.44090 1.46834 1.20250 0.93645 0.89787 1.05114 1.19185 0.93584 1.08628 0.93672 1.20957 0.96733 0.95871 0.93724 1.20495 0.90042 1.10463 1.00201 1.19705 0.86145 0.94715 0.92013 1.83515 1.13294 1.81174 1.37170 1.20720 0.85076 1.49990 0.91921 0.90126 1.25283 0.93294 0.95314 1.04884 1.69732 1.00217 1.48085 1.38198 0.85218 0.78116 0.79457 0.77925 1.19220 1.19025 1.18681 1.21257 0.99375 1.11010 0.94053 1.20924 0.90853 0.95670 1.00065 0.92392 0.91170 0.92640 0.89937 0.90374 0.92422 0.91941 0.74424 0.90805 0.91336 0.87137 0.84436 0.84188 0.82875 0.85208 0.90546 0.87251 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 71.98 0.71 -0.05 16 2 C -0.13 -0.63 6.05 30.59 0.19 -0.44 16 3 C 0.12 1.25 5.67 86.38 0.49 1.74 16 4 N -0.71 -8.14 5.52 -463.05 -2.55 -10.69 16 5 C 0.52 10.18 7.18 87.65 0.63 10.80 16 6 O -0.56 -16.08 16.51 15.72 0.26 -15.82 16 7 C 0.06 1.18 2.97 29.85 0.09 1.27 16 8 H 0.11 2.08 7.16 -2.39 -0.02 2.07 16 9 C -0.16 -2.18 9.50 71.98 0.68 -1.50 16 10 O -0.34 -8.13 9.42 -45.04 -0.42 -8.56 16 11 C 0.46 11.75 7.92 71.23 0.56 12.31 16 12 O -0.53 -16.76 15.25 21.98 0.34 -16.42 16 13 C -0.05 -1.08 5.94 29.10 0.17 -0.90 16 14 C -0.15 -4.49 4.38 -19.83 -0.09 -4.58 16 15 C -0.06 -1.72 9.69 22.25 0.22 -1.51 16 16 C -0.19 -7.55 9.99 22.39 0.22 -7.33 16 17 C 0.12 5.91 6.65 22.58 0.15 6.06 16 18 O -0.24 -13.53 8.59 -22.73 -0.20 -13.72 16 19 C -0.40 -24.01 9.95 67.92 0.68 -23.33 16 20 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 21 C 0.01 0.63 5.49 84.83 0.47 1.10 16 22 N -0.92 -55.51 13.96 21.62 0.30 -55.21 16 23 Si 0.97 45.98 28.62 68.60 1.96 47.94 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16 27 C -0.24 -10.67 9.17 22.39 0.21 -10.46 16 28 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.42 2.10 8.25 -92.71 -0.77 1.33 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.11 0.76 7.92 -2.39 -0.02 0.74 16 40 H 0.14 2.19 8.08 -2.39 -0.02 2.17 16 41 H 0.14 2.18 8.08 -2.39 -0.02 2.16 16 42 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 43 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 44 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.11 5.38 5.64 -2.91 -0.02 5.36 16 46 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -79.87 395.69 5.51 -74.36 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.23 Total: 16.73 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 5.59 Total: -18.61 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -2.25 Total: -65.91 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -0.02 Total: -54.52 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.96 Total: 47.94 kcal Total: -79.87 5.51 -74.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732364352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.334 kcal (2) G-P(sol) polarization free energy of solvation -79.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds