Wall clock time and date at job start Tue Mar 31 2020 18:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47049 * 2 1 4 4 N 1.46500 * 109.46752 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99892 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99776 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00013 * 179.97438 * 5 4 3 8 8 H 1.08998 * 109.47405 * 60.00217 * 7 5 4 9 9 C 1.52998 * 109.46853 * 299.99639 * 7 5 4 10 10 O 1.45199 * 109.46813 * 179.97438 * 7 5 4 11 11 C 1.34230 * 116.99982 * 209.99732 * 10 7 5 12 12 O 1.20823 * 119.99884 * 0.02562 * 11 10 7 13 13 C 1.50701 * 120.00220 * 179.97438 * 11 10 7 14 14 C 1.50703 * 109.46888 * 180.02562 * 13 11 10 15 15 C 1.38302 * 119.92829 * 269.72531 * 14 13 11 16 16 C 1.38102 * 120.06213 * 179.72560 * 15 14 13 17 17 C 1.38879 * 119.93307 * 0.57775 * 16 15 14 18 18 O 1.35749 * 120.06826 * 179.67809 * 17 16 15 19 19 C 1.34836 * 117.00028 * 174.48160 * 18 17 16 20 20 H 1.08000 * 119.99721 * 5.05908 * 19 18 17 21 21 C 1.38653 * 120.00071 * 185.05796 * 19 18 17 22 22 N 1.31561 * 119.99785 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99964 * 0.02562 * 21 19 18 24 24 H 1.48508 * 109.46821 * 89.99985 * 23 21 19 25 25 H 1.48496 * 109.47034 * 209.99638 * 23 21 19 26 26 H 1.48491 * 109.47258 * 330.00334 * 23 21 19 27 27 C 1.38875 * 119.85995 * 359.69764 * 17 16 15 28 28 C 1.38101 * 119.93503 * 0.02562 * 27 17 16 29 29 H 1.08992 * 109.46988 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47052 * 300.00224 * 1 2 3 31 31 H 1.08998 * 109.46814 * 59.99694 * 1 2 3 32 32 H 1.08998 * 109.47306 * 240.00236 * 2 1 3 33 33 H 1.08994 * 109.47079 * 119.99866 * 2 1 3 34 34 H 1.08998 * 109.46873 * 59.99971 * 3 2 1 35 35 H 1.08999 * 109.46963 * 299.99385 * 3 2 1 36 36 H 0.97000 * 120.00581 * 359.97438 * 4 3 2 37 37 H 1.09001 * 109.47338 * 300.00003 * 9 7 5 38 38 H 1.09002 * 109.47104 * 60.00537 * 9 7 5 39 39 H 1.09008 * 109.46625 * 179.97438 * 9 7 5 40 40 H 1.08994 * 109.47247 * 300.00352 * 13 11 10 41 41 H 1.09002 * 109.46807 * 60.00133 * 13 11 10 42 42 H 1.07993 * 119.96949 * 359.97438 * 15 14 13 43 43 H 1.07998 * 120.03194 * 180.27496 * 16 15 14 44 44 H 0.96998 * 119.99508 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.03057 * 179.97438 * 27 17 16 46 46 H 1.08000 * 119.96554 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6860 2.6097 -0.0003 8 1 6.0493 2.0962 -0.8904 9 6 6.1959 1.8880 1.2487 10 8 6.1699 3.9786 -0.0004 11 6 7.3496 4.2079 -0.5984 12 8 7.9574 3.2950 -1.1053 13 6 7.9154 5.6041 -0.6385 14 6 9.2375 5.5897 -1.3615 15 6 10.4088 5.3894 -0.6539 16 6 11.6215 5.3700 -1.3144 17 6 11.6650 5.5639 -2.6889 18 8 12.8561 5.5519 -3.3401 19 6 12.8190 5.6315 -4.6856 20 1 11.8771 5.7829 -5.1918 21 6 13.9901 5.5190 -5.4193 22 7 13.9540 5.5972 -6.7321 23 14 15.6192 5.2564 -4.5437 24 1 15.8691 3.8007 -4.3893 25 1 16.7138 5.8646 -5.3419 26 1 15.5698 5.8949 -3.2040 27 6 10.4876 5.7704 -3.3958 28 6 9.2775 5.7830 -2.7304 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9901 0.6025 -0.0006 37 1 5.8326 2.4016 2.1389 38 1 5.8326 0.8603 1.2484 39 1 7.2860 1.8876 1.2484 40 1 7.2222 6.2621 -1.1625 41 1 8.0612 5.9663 0.3792 42 1 10.3748 5.2441 0.4157 43 1 12.5354 5.2092 -0.7620 44 1 14.7732 5.5181 -7.2453 45 1 10.5183 5.9218 -4.4647 46 1 8.3616 5.9439 -3.2795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732364353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:35 Heat of formation + Delta-G solvation = -155.739723 kcal Electronic energy + Delta-G solvation = -27525.619334 eV Core-core repulsion = 23380.119467 eV Total energy + Delta-G solvation = -4145.499866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94455 -40.97131 -40.53725 -38.61303 -37.50067 -36.78100 -34.54893 -34.19785 -33.24916 -32.30037 -31.83951 -28.71010 -27.46679 -26.98496 -25.36646 -23.74976 -23.05291 -22.59933 -21.64230 -21.25771 -19.83975 -19.15272 -18.92152 -18.65634 -17.45493 -17.20525 -16.83414 -16.69676 -16.56544 -16.19559 -15.76894 -15.65144 -15.63420 -15.24753 -15.03840 -14.51696 -14.33761 -14.28349 -14.09992 -14.02723 -13.86106 -13.44801 -13.39359 -13.07908 -12.95826 -12.94310 -12.69947 -12.56914 -12.44628 -12.38881 -12.05353 -11.95932 -11.93400 -11.76263 -11.58777 -11.30101 -10.93476 -10.89949 -10.24047 -9.81877 -9.05131 -8.51088 -6.24115 0.49493 0.56158 1.16144 1.30879 1.31925 1.36297 1.40552 1.51827 2.25661 2.27547 2.76909 3.03500 3.15444 3.47078 3.67653 3.76742 3.85759 3.89654 3.98962 4.00243 4.06931 4.13559 4.33509 4.39343 4.53630 4.60822 4.62650 4.65394 4.65764 4.73369 4.77685 4.84849 4.94345 5.05324 5.15426 5.20992 5.23785 5.24072 5.30228 5.36936 5.43713 5.53457 5.68871 5.77465 5.88964 6.21333 6.33676 6.73149 6.82891 7.03890 7.56311 8.60509 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.001819 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.185819 B =15387.645299 C =15760.123293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.116 3.884 4 N -0.710 5.710 5 C 0.518 3.482 6 O -0.565 6.565 7 C 0.062 3.938 8 H 0.111 0.889 9 C -0.158 4.158 10 O -0.341 6.341 11 C 0.464 3.536 12 O -0.526 6.526 13 C -0.051 4.051 14 C -0.150 4.150 15 C -0.052 4.052 16 C -0.192 4.192 17 C 0.123 3.877 18 O -0.243 6.243 19 C -0.401 4.401 20 H 0.079 0.921 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.972 3.028 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.261 1.261 27 C -0.239 4.239 28 C -0.061 4.061 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.418 0.582 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.159 0.841 43 H 0.132 0.868 44 H 0.285 0.715 45 H 0.107 0.893 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.572 -11.281 19.958 32.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.007 4.007 4 N -0.364 5.364 5 C 0.303 3.697 6 O -0.443 6.443 7 C 0.003 3.997 8 H 0.128 0.872 9 C -0.216 4.216 10 O -0.257 6.257 11 C 0.308 3.692 12 O -0.414 6.414 13 C -0.088 4.088 14 C -0.151 4.151 15 C -0.069 4.069 16 C -0.211 4.211 17 C 0.074 3.926 18 O -0.151 6.151 19 C -0.478 4.478 20 H 0.097 0.903 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.794 3.206 24 H -0.192 1.192 25 H -0.190 1.190 26 H -0.185 1.185 27 C -0.258 4.258 28 C -0.079 4.079 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.256 0.744 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.165 0.835 42 H 0.176 0.824 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.529 -10.850 19.696 32.546 hybrid contribution 0.896 -0.406 -0.911 1.340 sum -22.633 -11.256 18.785 31.493 Atomic orbital electron populations 1.21698 0.94222 1.02821 1.02224 1.21701 0.97170 0.93716 1.03913 1.21542 0.78164 0.99137 1.01837 1.45803 1.07999 1.08042 1.74558 1.20350 0.89051 0.84321 0.75928 1.90731 1.70621 1.32833 1.50086 1.22634 0.91107 0.82175 1.03741 0.87150 1.22172 1.02826 1.01627 0.94937 1.86632 1.36930 1.31061 1.71079 1.24398 0.78237 0.93123 0.73434 1.90704 1.59887 1.46986 1.43829 1.20251 0.93552 0.89502 1.05481 1.19189 0.94370 1.08336 0.93165 1.20971 0.90042 0.95417 1.00509 1.20520 1.00089 1.09909 0.90540 1.19714 0.85173 0.94601 0.93094 1.83513 1.27542 1.83295 1.20716 1.20713 0.97226 1.51523 0.78310 0.90301 1.25309 1.02441 0.95587 0.95532 1.69735 1.30885 1.49801 1.05898 0.85194 0.77231 0.79218 0.78918 1.19166 1.19048 1.18549 1.21242 0.93344 1.10847 1.00399 1.20916 0.96379 0.96272 0.94312 0.91130 0.92339 0.92753 0.90429 0.89799 0.91867 0.92607 0.74389 0.90588 0.87158 0.91058 0.85090 0.83531 0.82361 0.84976 0.90538 0.87464 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 71.98 0.71 -0.11 16 2 C -0.13 -0.66 6.05 30.60 0.19 -0.47 16 3 C 0.12 1.29 5.67 86.38 0.49 1.78 16 4 N -0.71 -8.33 5.45 -463.05 -2.52 -10.85 16 5 C 0.52 10.36 7.23 87.66 0.63 11.00 16 6 O -0.56 -16.51 16.50 15.76 0.26 -16.25 16 7 C 0.06 1.17 2.98 29.85 0.09 1.26 16 8 H 0.11 2.13 7.15 -2.39 -0.02 2.11 16 9 C -0.16 -1.96 9.45 71.98 0.68 -1.28 16 10 O -0.34 -8.14 9.42 -45.07 -0.42 -8.57 16 11 C 0.46 11.79 7.92 71.24 0.56 12.36 16 12 O -0.53 -16.84 15.25 21.97 0.34 -16.50 16 13 C -0.05 -1.08 5.94 29.10 0.17 -0.90 16 14 C -0.15 -4.50 4.38 -19.83 -0.09 -4.59 16 15 C -0.05 -1.57 9.69 22.25 0.22 -1.36 16 16 C -0.19 -7.38 9.99 22.39 0.22 -7.16 16 17 C 0.12 5.91 6.65 22.58 0.15 6.06 16 18 O -0.24 -13.49 8.59 -22.78 -0.20 -13.69 16 19 C -0.40 -24.19 9.95 67.92 0.68 -23.51 16 20 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 21 C 0.01 0.57 5.49 84.83 0.47 1.04 16 22 N -0.92 -55.88 13.96 21.61 0.30 -55.58 16 23 Si 0.97 45.99 28.62 68.60 1.96 47.95 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 27 C -0.24 -10.90 9.17 22.39 0.21 -10.69 16 28 C -0.06 -2.19 9.69 22.25 0.22 -1.97 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.42 2.12 7.89 -92.71 -0.73 1.39 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 0.61 7.56 -2.39 -0.02 0.60 16 39 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.13 2.29 8.08 -2.39 -0.02 2.27 16 41 H 0.15 2.07 8.08 -2.39 -0.02 2.05 16 42 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 45 H 0.11 5.38 5.64 -2.91 -0.02 5.36 16 46 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -80.86 394.89 5.58 -75.28 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.27 Total: 16.75 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.59 Total: -18.54 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -2.22 Total: -66.44 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -0.02 Total: -55.00 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.96 Total: 47.95 kcal Total: -80.86 5.58 -75.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732364353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.463 kcal (2) G-P(sol) polarization free energy of solvation -80.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds