Wall clock time and date at job start Tue Mar 31 2020 18:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47106 * 2 1 4 4 N 1.46506 * 109.47332 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00295 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00069 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99958 * 179.97438 * 5 4 3 8 8 C 1.53006 * 109.46884 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46884 * 179.97438 * 8 7 5 10 10 O 1.20821 * 120.00185 * 359.97438 * 9 8 7 11 11 O 1.34231 * 120.00087 * 180.02562 * 9 8 7 12 12 C 1.45196 * 117.00047 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47037 * 179.97438 * 12 11 9 14 14 C 1.38294 * 119.93130 * 269.73094 * 13 12 11 15 15 C 1.38099 * 120.07055 * 179.72623 * 14 13 12 16 16 C 1.38885 * 119.92916 * 0.56465 * 15 14 13 17 17 O 1.35746 * 120.07221 * 179.68553 * 16 15 14 18 18 C 1.34828 * 117.00240 * 174.48968 * 17 16 15 19 19 H 1.08006 * 120.00054 * 5.05118 * 18 17 16 20 20 C 1.38655 * 120.00332 * 185.05591 * 18 17 16 21 21 N 1.31553 * 119.99844 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46869 * 89.99930 * 22 20 18 24 24 H 1.48504 * 109.46954 * 209.99804 * 22 20 18 25 25 H 1.48494 * 109.47063 * 330.00052 * 22 20 18 26 26 C 1.38888 * 119.85809 * 359.70827 * 16 15 14 27 27 C 1.38097 * 119.93011 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.47163 * 300.00376 * 1 2 3 29 29 H 1.08996 * 109.46858 * 60.00362 * 1 2 3 30 30 H 1.09003 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47312 * 239.99342 * 2 1 3 32 32 H 1.09007 * 109.47196 * 119.99380 * 2 1 3 33 33 H 1.09001 * 109.47417 * 59.99779 * 3 2 1 34 34 H 1.09004 * 109.46819 * 299.99292 * 3 2 1 35 35 H 0.96999 * 119.99401 * 359.97438 * 4 3 2 36 36 H 1.09001 * 109.47132 * 59.99666 * 7 5 4 37 37 H 1.08996 * 109.46999 * 299.99613 * 7 5 4 38 38 H 1.09001 * 109.47150 * 60.00116 * 8 7 5 39 39 H 1.08996 * 109.47345 * 299.99840 * 8 7 5 40 40 H 1.08996 * 109.47566 * 299.99750 * 12 11 9 41 41 H 1.09002 * 109.47418 * 60.00155 * 12 11 9 42 42 H 1.08001 * 119.96614 * 359.97036 * 14 13 12 43 43 H 1.08000 * 120.04137 * 180.26759 * 15 14 13 44 44 H 0.97003 * 120.00423 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.03290 * 179.97438 * 26 16 15 46 46 H 1.07997 * 119.96090 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5726 3.6600 0.0002 7 6 5.6859 2.6096 -0.0003 8 6 6.1959 4.0522 -0.0004 9 6 7.7029 4.0522 0.0002 10 8 8.3070 3.0059 0.0011 11 8 8.3741 5.2146 0.0007 12 6 9.8240 5.1386 0.0018 13 6 10.4001 6.5312 0.0017 14 6 10.6699 7.1662 -1.1969 15 6 11.1925 8.4445 -1.2005 16 6 11.4581 9.0879 0.0014 17 8 11.9777 10.3419 0.0012 18 6 12.1046 10.9521 1.1968 19 1 11.8755 10.4139 2.1048 20 6 12.5291 12.2705 1.2608 21 7 12.8085 12.9260 0.1550 22 14 12.7042 13.1161 2.9173 23 1 14.0800 12.9082 3.4361 24 1 12.4489 14.5705 2.7600 25 1 11.7229 12.5417 3.8724 26 6 11.1912 8.4453 1.2034 27 6 10.6625 7.1695 1.2001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9562 -0.8901 35 1 3.9900 0.6024 -0.0006 36 1 6.0492 2.0961 -0.8904 37 1 6.0492 2.0956 0.8895 38 1 5.8326 4.5661 0.8896 39 1 5.8326 4.5660 -0.8904 40 1 10.1594 4.6065 0.8921 41 1 10.1607 4.6065 -0.8879 42 1 10.4681 6.6634 -2.1312 43 1 11.3991 8.9415 -2.1368 44 1 13.1052 13.8484 0.1996 45 1 11.3970 8.9428 2.1396 46 1 10.4544 6.6696 2.1345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733494098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:23 Heat of formation + Delta-G solvation = -166.356029 kcal Electronic energy + Delta-G solvation = -26563.401505 eV Core-core repulsion = 22417.441281 eV Total energy + Delta-G solvation = -4145.960224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62955 -40.84797 -40.61374 -38.59474 -37.37365 -36.81293 -34.38253 -34.18952 -33.37730 -32.09087 -31.82164 -28.47018 -27.69291 -26.65829 -25.48692 -23.69386 -22.58615 -22.32211 -21.91930 -21.02112 -19.90564 -18.99982 -18.92647 -17.92559 -17.74900 -17.15173 -16.98335 -16.90807 -16.42146 -16.28405 -15.86934 -15.80270 -15.57087 -15.17768 -14.80580 -14.60484 -14.43033 -14.18384 -13.93805 -13.81905 -13.71934 -13.49180 -13.28261 -13.14150 -13.03648 -12.84872 -12.61157 -12.43348 -12.24913 -12.22443 -12.12386 -12.03013 -11.74842 -11.64709 -11.53085 -11.20686 -10.97718 -10.82030 -10.11347 -9.84399 -9.06380 -8.49370 -6.17974 0.43474 0.55268 1.18992 1.35643 1.43442 1.53051 1.59711 1.72674 2.16728 2.32337 2.82727 3.13965 3.45424 3.52067 3.82734 3.90530 3.92351 3.96763 4.04410 4.04959 4.09625 4.15244 4.31014 4.36305 4.45273 4.54478 4.59967 4.66603 4.73728 4.77304 4.78872 4.87863 4.91713 4.98765 5.11631 5.16048 5.22273 5.25003 5.34235 5.43031 5.48984 5.54489 5.65518 5.68535 5.99668 6.11975 6.51915 6.73803 6.95101 7.22552 7.73008 8.73362 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.001505 C = 0.001456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.815195 B =18605.967798 C =19229.202789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.719 5.719 5 C 0.514 3.486 6 O -0.584 6.584 7 C -0.120 4.120 8 C -0.097 4.097 9 C 0.467 3.533 10 O -0.533 6.533 11 O -0.362 6.362 12 C 0.130 3.870 13 C -0.184 4.184 14 C -0.042 4.042 15 C -0.206 4.206 16 C 0.125 3.875 17 O -0.227 6.227 18 C -0.417 4.417 19 H 0.104 0.896 20 C -0.020 4.020 21 N -0.918 5.918 22 Si 1.019 2.981 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.246 4.246 27 C -0.043 4.043 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.418 0.582 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.151 0.849 43 H 0.119 0.881 44 H 0.274 0.726 45 H 0.124 0.876 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.318 -28.440 1.268 34.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.009 4.009 4 N -0.372 5.372 5 C 0.301 3.699 6 O -0.464 6.464 7 C -0.160 4.160 8 C -0.135 4.135 9 C 0.311 3.689 10 O -0.423 6.423 11 O -0.279 6.279 12 C 0.058 3.942 13 C -0.185 4.185 14 C -0.060 4.060 15 C -0.226 4.226 16 C 0.074 3.926 17 O -0.133 6.133 18 C -0.493 4.493 19 H 0.121 0.879 20 C -0.218 4.218 21 N -0.555 5.555 22 Si 0.838 3.162 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.265 4.265 27 C -0.062 4.062 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.255 0.745 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.168 0.832 43 H 0.137 0.863 44 H 0.083 0.917 45 H 0.142 0.858 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.396 -27.658 1.016 33.796 hybrid contribution 0.643 0.595 0.460 0.989 sum -18.753 -27.063 1.476 32.958 Atomic orbital electron populations 1.21704 0.94464 1.02725 1.02134 1.21684 0.97008 0.94037 1.03732 1.21458 0.79286 0.98715 1.01441 1.45940 1.07668 1.08891 1.74714 1.20849 0.90566 0.83546 0.74933 1.90736 1.71452 1.32866 1.51333 1.21392 0.90222 0.96747 1.07596 1.21093 0.85428 0.99346 1.07651 1.23999 0.92251 0.81253 0.71359 1.90640 1.71295 1.33404 1.46971 1.86636 1.22959 1.35007 1.83276 1.21679 0.75343 0.93483 1.03737 1.19306 1.08466 0.97342 0.93356 1.20916 0.94391 0.92163 0.98501 1.20459 1.09295 0.97215 0.95585 1.20006 0.91501 0.85749 0.95376 1.83945 1.71223 1.24378 1.33744 1.21863 1.47637 0.96184 0.83590 0.87880 1.26592 0.95645 0.95800 1.03733 1.70177 1.43797 1.11685 1.29871 0.84589 0.79610 0.77263 0.74782 1.18687 1.19592 1.17652 1.21255 1.09926 0.97769 0.97553 1.20972 0.94187 0.92611 0.98380 0.92649 0.92634 0.91212 0.90251 0.90266 0.92635 0.92627 0.74483 0.86315 0.86356 0.86782 0.86709 0.89719 0.89463 0.83174 0.86287 0.91727 0.85843 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 71.98 0.71 -0.07 16 2 C -0.13 -0.60 6.05 30.59 0.19 -0.41 16 3 C 0.11 1.18 5.67 86.38 0.49 1.67 16 4 N -0.72 -6.91 5.56 -463.06 -2.57 -9.49 16 5 C 0.51 7.98 7.83 87.66 0.69 8.67 16 6 O -0.58 -14.44 15.98 -3.03 -0.05 -14.49 16 7 C -0.12 -1.44 4.99 29.85 0.15 -1.29 16 8 C -0.10 -1.62 5.10 29.85 0.15 -1.47 16 9 C 0.47 10.16 7.96 71.24 0.57 10.73 16 10 O -0.53 -13.00 15.73 21.98 0.35 -12.66 16 11 O -0.36 -9.39 10.20 -51.43 -0.52 -9.91 16 12 C 0.13 3.30 5.59 71.24 0.40 3.70 16 13 C -0.18 -5.85 5.52 -19.83 -0.11 -5.96 16 14 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 15 C -0.21 -8.70 9.99 22.39 0.22 -8.48 16 16 C 0.12 6.18 6.65 22.58 0.15 6.33 16 17 O -0.23 -13.59 9.76 -22.68 -0.22 -13.81 16 18 C -0.42 -24.11 9.49 67.92 0.64 -23.47 16 19 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 20 C -0.02 -1.11 5.49 84.83 0.47 -0.64 16 21 N -0.92 -55.98 13.67 21.61 0.30 -55.68 16 22 Si 1.02 42.49 29.55 68.60 2.03 44.52 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 26 C -0.25 -10.62 9.17 22.39 0.21 -10.41 16 27 C -0.04 -1.50 9.69 22.25 0.22 -1.29 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.42 1.34 8.47 -92.71 -0.79 0.56 16 36 H 0.12 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.12 1.12 8.10 -2.39 -0.02 1.10 16 38 H 0.11 1.93 8.10 -2.39 -0.02 1.91 16 39 H 0.11 1.93 8.10 -2.39 -0.02 1.91 16 40 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 41 H 0.09 1.98 8.07 -2.39 -0.02 1.96 16 42 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 46 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -77.74 397.91 4.86 -72.88 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.21 Total: 22.21 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 5.35 Total: -23.58 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -2.28 Total: -65.17 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -0.45 Total: -50.87 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -77.74 4.86 -72.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733494098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.478 kcal (2) G-P(sol) polarization free energy of solvation -77.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds