Wall clock time and date at job start Tue Mar 31 2020 18:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 N 1.46499 * 109.47445 * 119.99650 * 2 1 3 5 5 C 1.46503 * 119.99912 * 304.41026 * 4 2 1 6 6 C 1.52996 * 109.47178 * 269.99398 * 5 4 2 7 7 C 1.50695 * 109.47378 * 179.97438 * 6 5 4 8 8 O 1.20833 * 119.99835 * 0.02562 * 7 6 5 9 9 O 1.34223 * 120.00143 * 180.02562 * 7 6 5 10 10 C 1.34781 * 120.00336 * 124.40475 * 4 2 1 11 11 O 1.21274 * 120.00346 * 174.70214 * 10 4 2 12 12 C 1.50700 * 119.99492 * 354.70955 * 10 4 2 13 13 C 1.50703 * 109.47085 * 185.00297 * 12 10 4 14 14 C 1.38305 * 119.93165 * 89.99471 * 13 12 10 15 15 C 1.38097 * 120.07228 * 179.97438 * 14 13 12 16 16 C 1.38881 * 119.92754 * 0.02562 * 15 14 13 17 17 O 1.35752 * 120.07073 * 180.02562 * 16 15 14 18 18 C 1.34831 * 116.99659 * 6.02925 * 17 16 15 19 19 H 1.08000 * 119.99863 * 354.89435 * 18 17 16 20 20 C 1.38659 * 120.00098 * 174.89532 * 18 17 16 21 21 N 1.31560 * 119.99627 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00246 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47258 * 89.99572 * 22 20 18 24 24 H 1.48500 * 109.47150 * 209.99744 * 22 20 18 25 25 H 1.48503 * 109.47189 * 329.99816 * 22 20 18 26 26 C 1.38882 * 119.86022 * 0.27461 * 16 15 14 27 27 C 1.38101 * 119.93282 * 359.44655 * 26 16 15 28 28 H 1.09002 * 109.47036 * 305.26216 * 1 2 3 29 29 H 1.08994 * 109.47236 * 65.26516 * 1 2 3 30 30 H 1.08998 * 109.47453 * 185.26783 * 1 2 3 31 31 H 1.09001 * 109.47082 * 240.00138 * 2 1 3 32 32 H 1.08999 * 109.47443 * 183.18262 * 3 2 1 33 33 H 1.09003 * 109.46825 * 303.17527 * 3 2 1 34 34 H 1.08999 * 109.47631 * 63.17761 * 3 2 1 35 35 H 1.08996 * 109.46929 * 29.99668 * 5 4 2 36 36 H 1.09002 * 109.46946 * 149.99682 * 5 4 2 37 37 H 1.08997 * 109.47245 * 300.00502 * 6 5 4 38 38 H 1.09002 * 109.46950 * 60.00286 * 6 5 4 39 39 H 0.96709 * 117.00263 * 180.02562 * 9 7 6 40 40 H 1.08996 * 109.47643 * 64.99990 * 12 10 4 41 41 H 1.09001 * 109.47253 * 305.00056 * 12 10 4 42 42 H 1.08009 * 119.96465 * 0.02562 * 14 13 12 43 43 H 1.07996 * 120.03808 * 180.02562 * 15 14 13 44 44 H 0.97004 * 119.99826 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.02922 * 179.72652 * 26 16 15 46 46 H 1.07997 * 119.96292 * 180.27368 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.5866 -0.2487 2.5246 6 6 2.5583 0.8093 3.0510 7 6 2.1139 1.2642 4.4172 8 8 1.1219 0.7903 4.9187 9 8 2.8199 2.1957 5.0771 10 6 2.8648 -1.7323 1.0746 11 8 3.3445 -2.2427 2.0646 12 6 3.2153 -2.2627 -0.2917 13 6 4.0728 -3.4937 -0.1479 14 6 3.4814 -4.7414 -0.0688 15 6 4.2644 -5.8713 0.0624 16 6 5.6472 -5.7537 0.1156 17 8 6.4197 -6.8625 0.2441 18 6 5.7928 -8.0550 0.1891 19 1 4.7151 -8.0963 0.1312 20 6 6.5316 -9.2282 0.2068 21 7 7.8443 -9.1778 0.2779 22 14 5.6632 -10.8802 0.1298 23 1 5.5076 -11.2920 -1.2884 24 1 6.4673 -11.8964 0.8550 25 1 4.3242 -10.7654 0.7616 26 6 6.2378 -4.4988 0.0422 27 6 5.4495 -3.3732 -0.0948 28 1 -0.3633 0.5933 0.8391 29 1 -0.3633 0.4300 -0.9333 30 1 -0.3634 -1.0233 0.0943 31 1 1.8933 -0.5138 -0.8900 32 1 3.1285 1.4431 -0.0571 33 1 1.6309 1.9725 -0.8602 34 1 1.7239 1.9397 0.9171 35 1 0.5859 0.1780 2.4581 36 1 1.5738 -1.1007 3.2044 37 1 3.5591 0.3825 3.1175 38 1 2.5711 1.6612 2.3712 39 1 2.4960 2.4552 5.9505 40 1 3.7627 -1.5016 -0.8476 41 1 2.3013 -2.5174 -0.8281 42 1 2.4059 -4.8322 -0.1107 43 1 3.8019 -6.8453 0.1237 44 1 8.3613 -9.9985 0.2899 45 1 7.3126 -4.4039 0.0878 46 1 5.9085 -2.3975 -0.1563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736464860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:51 Heat of formation + Delta-G solvation = -131.933578 kcal Electronic energy + Delta-G solvation = -28464.435229 eV Core-core repulsion = 24319.967674 eV Total energy + Delta-G solvation = -4144.467554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.78563 -40.07810 -38.87368 -37.13993 -36.46112 -36.31053 -33.21269 -32.39341 -31.60993 -30.63833 -30.10550 -27.72521 -26.95316 -25.39147 -24.55603 -22.20311 -21.92771 -21.53581 -20.59580 -19.06480 -18.26629 -17.93803 -17.55826 -16.98882 -16.91691 -16.26972 -15.76198 -15.47951 -14.57413 -14.53737 -14.46143 -14.22500 -14.12934 -13.76746 -13.58227 -13.49369 -13.45980 -13.32124 -12.85622 -12.73942 -12.65397 -12.37190 -12.23543 -11.87675 -11.83988 -11.66504 -11.49761 -11.36010 -11.23534 -11.21385 -10.90289 -10.80127 -10.67829 -10.57350 -10.39575 -9.69332 -9.28867 -8.94939 -8.78270 -8.10644 -7.12110 -6.41060 -3.99509 1.87730 2.24454 2.29611 2.50967 2.72042 3.08710 3.16186 3.16510 3.21225 4.00316 4.32095 4.43283 4.44774 4.63570 4.70397 4.76291 4.90471 4.94943 5.08064 5.14560 5.17132 5.19519 5.27847 5.29295 5.35160 5.42972 5.48140 5.52750 5.59962 5.71282 5.76344 5.80095 5.84991 5.89091 6.15725 6.25885 6.34983 6.46098 6.74402 6.95451 7.09472 7.25240 7.29986 7.41038 7.49316 7.54588 7.88291 8.04374 8.23600 9.04730 9.75704 10.77148 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.002266 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.994428 B =12351.805224 C =12906.909965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 C -0.170 4.170 4 N -0.618 5.618 5 C 0.128 3.872 6 C -0.138 4.138 7 C 0.484 3.516 8 O -0.516 6.516 9 O -0.518 6.518 10 C 0.512 3.488 11 O -0.514 6.514 12 C -0.079 4.079 13 C -0.171 4.171 14 C -0.057 4.057 15 C -0.232 4.232 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.192 4.192 27 C -0.058 4.058 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.410 0.590 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.116 0.884 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 23.865 -0.712 27.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.023 3.977 3 C -0.228 4.228 4 N -0.353 5.353 5 C 0.005 3.995 6 C -0.176 4.176 7 C 0.326 3.674 8 O -0.405 6.405 9 O -0.330 6.330 10 C 0.300 3.700 11 O -0.387 6.387 12 C -0.118 4.118 13 C -0.173 4.173 14 C -0.076 4.076 15 C -0.251 4.251 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.211 4.211 27 C -0.076 4.076 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.269 0.731 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.514 23.095 -0.380 26.761 hybrid contribution -0.724 -0.527 0.627 1.093 sum -14.238 22.568 0.247 26.685 Atomic orbital electron populations 1.22191 0.94741 1.02928 1.02546 1.21240 0.94683 0.93475 0.88308 1.22354 1.02031 0.95845 1.02540 1.48185 1.48209 1.32908 1.06006 1.21086 0.96311 0.97553 0.84578 1.22013 1.03777 1.01549 0.90299 1.23406 0.80487 0.75587 0.87876 1.90742 1.26391 1.54583 1.68739 1.84544 1.56864 1.55557 1.36028 1.21155 0.77632 0.78627 0.92550 1.90752 1.50520 1.57639 1.39778 1.20450 1.00595 0.97181 0.93603 1.18642 0.93183 0.92539 1.12901 1.20505 0.97966 0.91842 0.97269 1.21099 0.93594 0.99032 1.11414 1.19391 0.90031 0.88316 0.91944 1.83977 1.34525 1.11806 1.77874 1.21328 0.92384 0.80423 1.52549 0.89100 1.25285 0.95616 0.99026 0.96635 1.70045 1.04840 1.28807 1.46179 0.85715 0.78904 0.80193 0.78637 1.19900 1.20281 1.19211 1.20155 0.99526 0.90262 1.11138 1.20377 0.92600 0.96745 0.97874 0.92154 0.91213 0.91773 0.88279 0.91837 0.91166 0.92067 0.89624 0.88956 0.86912 0.87153 0.73093 0.88905 0.89071 0.87879 0.85616 0.92071 0.86572 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 8.95 37.15 0.33 -0.57 16 2 C 0.13 0.80 3.16 -67.93 -0.21 0.58 16 3 C -0.17 -0.82 8.57 37.16 0.32 -0.50 16 4 N -0.62 -5.92 2.40 -166.11 -0.40 -6.32 16 5 C 0.13 1.25 4.18 -4.04 -0.02 1.23 16 6 C -0.14 -1.17 5.87 -27.89 -0.16 -1.33 16 7 C 0.48 4.57 8.33 36.00 0.30 4.87 16 8 O -0.52 -6.39 16.74 -18.76 -0.31 -6.70 16 9 O -0.52 -3.75 13.42 -39.24 -0.53 -4.28 16 10 C 0.51 6.85 7.64 -10.98 -0.08 6.76 16 11 O -0.51 -9.39 15.68 5.56 0.09 -9.31 16 12 C -0.08 -0.96 4.15 -29.03 -0.12 -1.08 16 13 C -0.17 -2.96 4.38 -104.57 -0.46 -3.42 16 14 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 15 C -0.23 -5.24 9.17 -39.40 -0.36 -5.60 16 16 C 0.16 3.93 6.65 -39.10 -0.26 3.67 16 17 O -0.18 -5.23 9.76 0.04 0.00 -5.23 16 18 C -0.39 -11.17 9.49 30.89 0.29 -10.87 16 19 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 22 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 C -0.19 -4.21 9.99 -39.39 -0.39 -4.60 16 27 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 28 H 0.06 0.33 6.79 -51.93 -0.35 -0.02 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.56 5.79 -51.93 -0.30 0.26 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.29 5.74 -51.93 -0.30 -0.01 16 35 H 0.09 0.71 6.28 -51.93 -0.33 0.39 16 36 H 0.09 1.18 7.46 -51.93 -0.39 0.79 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.11 0.69 5.35 -51.93 -0.28 0.41 16 39 H 0.41 1.29 9.10 45.56 0.41 1.70 16 40 H 0.09 0.89 7.83 -51.93 -0.41 0.49 16 41 H 0.09 0.91 7.63 -51.93 -0.40 0.51 16 42 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 43 H 0.13 2.84 5.65 -52.49 -0.30 2.54 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -36.71 383.97 -6.74 -43.45 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.42 Total: 4.54 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.69 Total: -12.81 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.36 Total: -31.33 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.75 Total: -25.52 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.71 -6.74 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736464860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.486 kcal (2) G-P(sol) polarization free energy of solvation -36.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds