Wall clock time and date at job start Tue Mar 31 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 N 1.46499 * 109.47445 * 119.99650 * 2 1 3 5 5 C 1.46503 * 119.99912 * 304.41026 * 4 2 1 6 6 C 1.52996 * 109.47178 * 269.99398 * 5 4 2 7 7 C 1.50695 * 109.47378 * 179.97438 * 6 5 4 8 8 O 1.20833 * 119.99835 * 0.02562 * 7 6 5 9 9 O 1.34223 * 120.00143 * 180.02562 * 7 6 5 10 10 C 1.34781 * 120.00336 * 124.40475 * 4 2 1 11 11 O 1.21274 * 120.00346 * 174.70214 * 10 4 2 12 12 C 1.50700 * 119.99492 * 354.70955 * 10 4 2 13 13 C 1.50703 * 109.47085 * 185.00297 * 12 10 4 14 14 C 1.38305 * 119.93165 * 89.99471 * 13 12 10 15 15 C 1.38097 * 120.07228 * 179.97438 * 14 13 12 16 16 C 1.38881 * 119.92754 * 0.02562 * 15 14 13 17 17 O 1.35752 * 120.07073 * 180.02562 * 16 15 14 18 18 C 1.34831 * 116.99659 * 6.02925 * 17 16 15 19 19 H 1.08000 * 119.99863 * 354.89435 * 18 17 16 20 20 C 1.38659 * 120.00098 * 174.89532 * 18 17 16 21 21 N 1.31560 * 119.99627 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00246 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47258 * 89.99572 * 22 20 18 24 24 H 1.48500 * 109.47150 * 209.99744 * 22 20 18 25 25 H 1.48503 * 109.47189 * 329.99816 * 22 20 18 26 26 C 1.38882 * 119.86022 * 0.27461 * 16 15 14 27 27 C 1.38101 * 119.93282 * 359.44655 * 26 16 15 28 28 H 1.09002 * 109.47036 * 305.26216 * 1 2 3 29 29 H 1.08994 * 109.47236 * 65.26516 * 1 2 3 30 30 H 1.08998 * 109.47453 * 185.26783 * 1 2 3 31 31 H 1.09001 * 109.47082 * 240.00138 * 2 1 3 32 32 H 1.08999 * 109.47443 * 183.18262 * 3 2 1 33 33 H 1.09003 * 109.46825 * 303.17527 * 3 2 1 34 34 H 1.08999 * 109.47631 * 63.17761 * 3 2 1 35 35 H 1.08996 * 109.46929 * 29.99668 * 5 4 2 36 36 H 1.09002 * 109.46946 * 149.99682 * 5 4 2 37 37 H 1.08997 * 109.47245 * 300.00502 * 6 5 4 38 38 H 1.09002 * 109.46950 * 60.00286 * 6 5 4 39 39 H 0.96709 * 117.00263 * 180.02562 * 9 7 6 40 40 H 1.08996 * 109.47643 * 64.99990 * 12 10 4 41 41 H 1.09001 * 109.47253 * 305.00056 * 12 10 4 42 42 H 1.08009 * 119.96465 * 0.02562 * 14 13 12 43 43 H 1.07996 * 120.03808 * 180.02562 * 15 14 13 44 44 H 0.97004 * 119.99826 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.02922 * 179.72652 * 26 16 15 46 46 H 1.07997 * 119.96292 * 180.27368 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.5866 -0.2487 2.5246 6 6 2.5583 0.8093 3.0510 7 6 2.1139 1.2642 4.4172 8 8 1.1219 0.7903 4.9187 9 8 2.8199 2.1957 5.0771 10 6 2.8648 -1.7323 1.0746 11 8 3.3445 -2.2427 2.0646 12 6 3.2153 -2.2627 -0.2917 13 6 4.0728 -3.4937 -0.1479 14 6 3.4814 -4.7414 -0.0688 15 6 4.2644 -5.8713 0.0624 16 6 5.6472 -5.7537 0.1156 17 8 6.4197 -6.8625 0.2441 18 6 5.7928 -8.0550 0.1891 19 1 4.7151 -8.0963 0.1312 20 6 6.5316 -9.2282 0.2068 21 7 7.8443 -9.1778 0.2779 22 14 5.6632 -10.8802 0.1298 23 1 5.5076 -11.2920 -1.2884 24 1 6.4673 -11.8964 0.8550 25 1 4.3242 -10.7654 0.7616 26 6 6.2378 -4.4988 0.0422 27 6 5.4495 -3.3732 -0.0948 28 1 -0.3633 0.5933 0.8391 29 1 -0.3633 0.4300 -0.9333 30 1 -0.3634 -1.0233 0.0943 31 1 1.8933 -0.5138 -0.8900 32 1 3.1285 1.4431 -0.0571 33 1 1.6309 1.9725 -0.8602 34 1 1.7239 1.9397 0.9171 35 1 0.5859 0.1780 2.4581 36 1 1.5738 -1.1007 3.2044 37 1 3.5591 0.3825 3.1175 38 1 2.5711 1.6612 2.3712 39 1 2.4960 2.4552 5.9505 40 1 3.7627 -1.5016 -0.8476 41 1 2.3013 -2.5174 -0.8281 42 1 2.4059 -4.8322 -0.1107 43 1 3.8019 -6.8453 0.1237 44 1 8.3613 -9.9985 0.2899 45 1 7.3126 -4.4039 0.0878 46 1 5.9085 -2.3975 -0.1563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736464860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:50 Heat of formation + Delta-G solvation = -157.206809 kcal Electronic energy + Delta-G solvation = -28465.531158 eV Core-core repulsion = 24319.967674 eV Total energy + Delta-G solvation = -4145.563484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61475 -41.06261 -40.50932 -38.42537 -37.64128 -37.15581 -34.43256 -33.87250 -32.81510 -31.77592 -31.58767 -28.47777 -27.99485 -27.16819 -25.61255 -23.62409 -23.00654 -22.40258 -21.89120 -19.94137 -19.78269 -19.00585 -18.79965 -18.43424 -17.73032 -17.04386 -16.75412 -16.63397 -16.29720 -15.99049 -15.72485 -15.50633 -15.06459 -15.04174 -14.84930 -14.48050 -14.43600 -14.29874 -14.10397 -13.92726 -13.59132 -13.42764 -13.19184 -12.97547 -12.80087 -12.73788 -12.59716 -12.43313 -12.30211 -12.27457 -12.12099 -12.09275 -11.98492 -11.78457 -11.54968 -11.17521 -10.87299 -10.69683 -9.76809 -9.74396 -8.88625 -8.47161 -6.15232 0.62967 0.68175 1.13980 1.33853 1.43392 1.51737 1.65493 1.79861 2.17855 2.37700 2.83732 3.16677 3.53070 3.68434 3.73778 3.85344 4.00998 4.05693 4.07709 4.20679 4.23080 4.31173 4.40917 4.47305 4.49123 4.60715 4.69329 4.72095 4.74970 4.81395 4.86992 4.96560 5.06098 5.08816 5.14129 5.16525 5.31763 5.36014 5.46604 5.55127 5.57696 5.65445 5.72828 5.79072 6.03427 6.23530 6.44564 6.93357 6.97447 7.26500 7.79212 8.76415 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.002266 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.994428 B =12351.805224 C =12906.909965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.119 3.881 3 C -0.168 4.168 4 N -0.604 5.604 5 C 0.129 3.871 6 C -0.131 4.131 7 C 0.489 3.511 8 O -0.551 6.551 9 O -0.513 6.513 10 C 0.511 3.489 11 O -0.575 6.575 12 C -0.077 4.077 13 C -0.145 4.145 14 C -0.062 4.062 15 C -0.244 4.244 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.206 4.206 27 C -0.055 4.055 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.140 0.860 39 H 0.428 0.572 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.137 0.863 43 H 0.116 0.884 44 H 0.273 0.727 45 H 0.112 0.888 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.907 27.054 -2.294 31.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 C -0.226 4.226 4 N -0.337 5.337 5 C 0.006 3.994 6 C -0.169 4.169 7 C 0.333 3.667 8 O -0.442 6.442 9 O -0.327 6.327 10 C 0.301 3.699 11 O -0.454 6.454 12 C -0.116 4.116 13 C -0.146 4.146 14 C -0.080 4.080 15 C -0.264 4.264 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.226 4.226 27 C -0.072 4.072 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.157 0.843 39 H 0.290 0.710 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.130 0.870 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.373 26.398 -1.983 31.126 hybrid contribution -0.021 -1.064 1.119 1.544 sum -16.394 25.334 -0.864 30.188 Atomic orbital electron populations 1.22188 0.93945 1.02418 1.03681 1.21602 0.95338 0.94338 0.87028 1.22345 1.02030 0.94677 1.03545 1.48178 1.46587 1.31806 1.07138 1.21020 0.97624 0.96640 0.84122 1.21951 1.02383 1.02013 0.90544 1.23530 0.79869 0.75270 0.88068 1.90735 1.28033 1.55883 1.69593 1.84503 1.56358 1.54622 1.37233 1.21266 0.77611 0.78985 0.92033 1.90757 1.53205 1.59841 1.41554 1.20589 1.01639 0.95575 0.93803 1.19262 0.93469 0.94128 1.07718 1.20927 0.99462 0.91386 0.96215 1.21215 0.93019 1.00156 1.11972 1.19951 0.91281 0.88380 0.94232 1.83937 1.36199 1.12875 1.81091 1.21817 0.93069 0.81081 1.53033 0.88312 1.26612 0.96434 1.03190 0.95905 1.70192 1.06829 1.30077 1.48926 0.84577 0.77926 0.74300 0.79326 1.18472 1.19529 1.17895 1.20448 1.00044 0.90540 1.11523 1.20861 0.93193 0.97105 0.96089 0.92273 0.89112 0.92912 0.86688 0.91924 0.89168 0.92001 0.87983 0.92556 0.88181 0.84283 0.70991 0.84916 0.85607 0.84548 0.86633 0.91836 0.87033 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 8.95 71.98 0.64 -0.46 16 2 C 0.12 0.93 3.16 44.99 0.14 1.08 16 3 C -0.17 -0.80 8.57 71.98 0.62 -0.18 16 4 N -0.60 -9.64 2.40 -797.85 -1.91 -11.56 16 5 C 0.13 2.31 4.18 86.38 0.36 2.67 16 6 C -0.13 -1.96 5.87 29.85 0.18 -1.79 16 7 C 0.49 8.57 8.33 71.23 0.59 9.16 16 8 O -0.55 -13.33 16.74 21.94 0.37 -12.96 16 9 O -0.51 -6.46 13.42 -51.35 -0.69 -7.15 16 10 C 0.51 12.15 7.64 87.66 0.67 12.82 16 11 O -0.58 -20.47 15.68 -3.01 -0.05 -20.52 16 12 C -0.08 -1.49 4.15 29.10 0.12 -1.37 16 13 C -0.14 -4.57 4.38 -19.83 -0.09 -4.66 16 14 C -0.06 -2.25 9.69 22.25 0.22 -2.04 16 15 C -0.24 -11.34 9.17 22.39 0.21 -11.13 16 16 C 0.11 5.89 6.65 22.58 0.15 6.04 16 17 O -0.23 -14.77 9.76 -22.77 -0.22 -15.00 16 18 C -0.41 -25.13 9.49 67.92 0.64 -24.48 16 19 H 0.10 5.54 5.21 -2.91 -0.02 5.53 16 20 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 21 N -0.92 -58.25 13.67 21.62 0.30 -57.96 16 22 Si 1.02 44.28 29.55 68.60 2.03 46.31 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 26 C -0.21 -9.32 9.99 22.39 0.22 -9.09 16 27 C -0.05 -1.91 9.69 22.25 0.22 -1.69 16 28 H 0.06 0.43 6.79 -2.39 -0.02 0.41 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.12 0.58 5.79 -2.39 -0.01 0.57 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.06 0.30 5.74 -2.39 -0.01 0.29 16 35 H 0.10 1.48 6.28 -2.39 -0.01 1.47 16 36 H 0.06 1.45 7.46 -2.39 -0.02 1.43 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.14 1.25 5.35 -2.39 -0.01 1.24 16 39 H 0.43 1.90 9.10 -74.05 -0.67 1.23 16 40 H 0.13 1.64 7.83 -2.39 -0.02 1.63 16 41 H 0.13 1.70 7.63 -2.39 -0.02 1.68 16 42 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.12 5.46 5.65 -2.91 -0.02 5.44 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 46 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -88.84 383.97 5.53 -83.32 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.35 Total: 21.59 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 5.36 Total: -26.09 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.62 Total: -69.51 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -0.59 Total: -55.62 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -88.84 5.53 -83.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736464860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.891 kcal (2) G-P(sol) polarization free energy of solvation -88.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds