Wall clock time and date at job start Tue Mar 31 2020 18:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47223 * 2 1 4 4 H 1.08993 * 109.46942 * 305.44238 * 3 2 1 5 5 O 1.42896 * 109.46959 * 65.44035 * 3 2 1 6 6 C 1.42910 * 114.00001 * 211.83963 * 5 3 2 7 7 C 1.50696 * 109.47075 * 185.43925 * 3 2 1 8 8 O 1.20825 * 119.99815 * 244.99722 * 7 3 2 9 9 O 1.34230 * 119.99988 * 65.00409 * 7 3 2 10 10 C 1.45206 * 117.00012 * 179.97438 * 9 7 3 11 11 C 1.50700 * 109.47150 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99993 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00028 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99803 * 4.86914 * 13 11 10 15 15 C 1.50695 * 109.47206 * 90.00137 * 14 13 11 16 16 H 1.08006 * 119.99983 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00304 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99884 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00185 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46974 * 90.00262 * 19 17 15 21 21 H 1.48500 * 109.47121 * 209.99959 * 19 17 15 22 22 H 1.48497 * 109.47357 * 330.00592 * 19 17 15 23 23 C 1.39917 * 120.00057 * 184.86906 * 13 11 10 24 24 C 1.38874 * 120.07387 * 273.68920 * 23 13 11 25 25 C 1.38109 * 119.92959 * 179.74543 * 24 23 13 26 26 C 1.38279 * 120.07398 * 0.53240 * 25 24 23 27 27 C 1.38282 * 120.13912 * 359.74320 * 26 25 24 28 28 C 1.38118 * 120.06927 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.46627 * 174.81682 * 1 2 3 30 30 H 1.08992 * 109.47158 * 294.81264 * 1 2 3 31 31 H 1.08991 * 109.46895 * 54.81992 * 1 2 3 32 32 H 1.08997 * 109.47710 * 239.99721 * 2 1 3 33 33 H 1.09006 * 109.47287 * 119.99624 * 2 1 3 34 34 H 1.08997 * 109.47169 * 184.70827 * 6 5 3 35 35 H 1.08994 * 109.46607 * 304.71387 * 6 5 3 36 36 H 1.09000 * 109.46766 * 64.71000 * 6 5 3 37 37 H 1.09002 * 109.46364 * 299.99663 * 10 9 7 38 38 H 1.08999 * 109.47239 * 59.99228 * 10 9 7 39 39 H 1.08995 * 109.46850 * 210.00358 * 14 13 11 40 40 H 1.08999 * 109.46948 * 329.99846 * 14 13 11 41 41 H 0.96993 * 120.00065 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.02936 * 0.02797 * 24 23 13 43 43 H 1.07997 * 119.96264 * 180.27736 * 25 24 23 44 44 H 1.07997 * 119.93298 * 179.72513 * 26 25 24 45 45 H 1.07994 * 119.96909 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.03070 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5994 1.9837 -0.8372 5 8 1.6709 2.0782 1.2254 6 6 1.4236 3.4803 1.1013 7 6 3.5410 1.4446 -0.1347 8 8 4.2281 1.8575 0.7694 9 8 4.1146 0.9879 -1.2590 10 6 5.5650 1.0203 -1.3193 11 6 6.0251 0.4722 -2.6455 12 8 5.2108 0.0912 -3.4596 13 7 7.3415 0.4054 -2.9270 14 6 8.3281 0.7648 -1.9054 15 6 8.6937 -0.4600 -1.1072 16 1 8.2372 -1.4112 -1.3380 17 6 9.6118 -0.3666 -0.0828 18 7 10.1682 0.7916 0.1980 19 14 10.0645 -1.8847 0.9070 20 1 11.2187 -2.5663 0.2679 21 1 10.4301 -1.4835 2.2893 22 1 8.9048 -2.8111 0.9508 23 6 7.7657 -0.0073 -4.1948 24 6 7.9261 -1.3592 -4.4691 25 6 8.3400 -1.7635 -5.7231 26 6 8.6052 -0.8234 -6.7019 27 6 8.4519 0.5238 -6.4302 28 6 8.0328 0.9344 -5.1799 29 1 -0.3633 -1.0235 -0.0928 30 1 -0.3633 0.4312 0.9327 31 1 -0.3633 0.5920 -0.8399 32 1 1.8935 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.2312 3.9039 2.0870 35 1 2.2947 3.9652 0.6610 36 1 0.5561 3.6409 0.4612 37 1 5.9101 2.0486 -1.2112 38 1 5.9759 0.4126 -0.5130 39 1 9.2205 1.1645 -2.3869 40 1 7.9052 1.5185 -1.2412 41 1 10.8138 0.8574 0.9188 42 1 7.7230 -2.0938 -3.7038 43 1 8.4606 -2.8149 -5.9384 44 1 8.9329 -1.1419 -7.6804 45 1 8.6602 1.2557 -7.1965 46 1 7.9129 1.9867 -4.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744637199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:35 Heat of formation + Delta-G solvation = -135.305756 kcal Electronic energy + Delta-G solvation = -29115.593147 eV Core-core repulsion = 24970.979364 eV Total energy + Delta-G solvation = -4144.613783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62797 -39.82065 -38.34268 -37.75039 -36.01534 -35.09760 -33.79170 -32.72153 -30.57163 -30.29695 -28.76213 -27.66091 -27.05245 -26.14677 -23.13804 -22.68737 -22.18896 -22.06374 -20.77361 -19.14623 -18.00981 -17.25880 -16.93726 -16.66014 -16.48048 -16.10873 -15.82771 -15.59061 -15.33092 -14.90061 -14.57112 -14.33063 -14.09720 -13.93252 -13.82927 -13.28247 -13.07491 -12.86112 -12.64962 -12.40410 -12.29312 -12.17911 -11.96732 -11.77504 -11.64649 -11.36906 -11.34854 -11.08086 -10.98058 -10.89557 -10.84696 -10.82620 -10.46290 -10.27586 -9.86685 -9.74510 -9.32788 -8.64317 -8.57143 -8.36978 -8.06643 -6.26335 -4.34760 1.65764 1.76997 2.25208 2.44301 3.05243 3.20505 3.28006 3.30998 3.48235 3.75878 4.12810 4.28483 4.56842 4.67763 4.80030 5.06373 5.06920 5.09281 5.13985 5.20666 5.24966 5.27656 5.29623 5.41671 5.47856 5.49848 5.56001 5.73572 5.76711 5.82563 5.87589 5.92009 5.96813 6.09982 6.35887 6.52077 6.57459 6.73376 6.75088 6.81654 6.90448 7.04204 7.17865 7.51454 7.68417 7.86503 7.91209 8.00980 8.63565 8.78810 9.33820 10.81037 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008883 B = 0.003742 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.166960 B = 7481.401633 C = 9451.422839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.106 3.894 4 H 0.101 0.899 5 O -0.353 6.353 6 C 0.026 3.974 7 C 0.431 3.569 8 O -0.487 6.487 9 O -0.336 6.336 10 C 0.056 3.944 11 C 0.527 3.473 12 O -0.540 6.540 13 N -0.560 5.560 14 C 0.236 3.764 15 C -0.545 4.545 16 H 0.063 0.937 17 C 0.069 3.931 18 N -0.887 5.887 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.169 3.831 24 C -0.098 4.098 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.118 4.118 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.267 0.733 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.056 2.031 -5.529 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.046 3.954 4 H 0.118 0.882 5 O -0.271 6.271 6 C -0.071 4.071 7 C 0.272 3.728 8 O -0.373 6.373 9 O -0.252 6.252 10 C -0.021 4.021 11 C 0.314 3.686 12 O -0.417 6.417 13 N -0.291 5.291 14 C 0.118 3.882 15 C -0.583 4.583 16 H 0.081 0.919 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.725 3.275 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.197 1.197 23 C 0.079 3.921 24 C -0.117 4.117 25 C -0.136 4.136 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.137 4.137 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.135 0.865 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.124 1.976 -5.343 14.307 hybrid contribution 0.889 -0.422 0.666 1.189 sum -12.234 1.554 -4.677 13.189 Atomic orbital electron populations 1.21711 0.94161 1.02208 1.02314 1.21647 0.97348 0.92065 1.04601 1.21727 0.86603 0.97665 0.89437 0.88186 1.88036 1.87308 1.21923 1.29800 1.22934 0.99629 0.81275 1.03224 1.24575 0.92935 0.74986 0.80307 1.90717 1.64615 1.42196 1.39803 1.86465 1.23248 1.75933 1.39529 1.22803 0.76928 1.04041 0.98280 1.19864 0.82319 0.78834 0.87550 1.90670 1.53061 1.48564 1.49453 1.45749 1.05957 1.65397 1.11977 1.19650 0.86913 0.96762 0.84891 1.21411 1.25480 0.95134 1.16325 0.91863 1.24925 0.95376 0.96411 0.96811 1.69905 1.28256 1.23848 1.30477 0.86479 0.79002 0.82660 0.79315 1.20365 1.20888 1.19661 1.17470 0.97467 0.92116 0.85010 1.21409 0.97940 0.95526 0.96817 1.20991 1.00126 0.99379 0.93105 1.21060 1.01243 0.93224 0.99089 1.20909 1.00602 0.95920 0.96253 1.21290 1.00045 0.99355 0.93026 0.91987 0.91925 0.92589 0.88749 0.90215 0.88961 0.93550 0.93564 0.88273 0.86546 0.93939 0.93977 0.92293 0.85771 0.86152 0.86403 0.86176 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.76 37.16 0.36 -0.87 16 2 C -0.12 -1.30 5.62 -26.73 -0.15 -1.45 16 3 C 0.11 1.31 2.62 -27.88 -0.07 1.24 16 4 H 0.10 0.99 7.80 -51.93 -0.41 0.59 16 5 O -0.35 -4.51 9.53 -55.14 -0.53 -5.04 16 6 C 0.03 0.25 10.79 101.05 1.09 1.34 16 7 C 0.43 7.14 7.27 36.00 0.26 7.40 16 8 O -0.49 -9.58 16.26 -25.46 -0.41 -9.99 16 9 O -0.34 -6.03 9.72 -45.90 -0.45 -6.48 16 10 C 0.06 1.09 4.40 36.01 0.16 1.24 16 11 C 0.53 11.16 7.71 -10.99 -0.08 11.07 16 12 O -0.54 -12.40 16.48 -14.11 -0.23 -12.63 16 13 N -0.56 -11.96 2.48 -114.74 -0.28 -12.25 16 14 C 0.24 5.56 4.98 -5.19 -0.03 5.53 16 15 C -0.55 -14.04 9.39 -34.44 -0.32 -14.37 16 16 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 17 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 18 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 19 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C 0.17 3.39 4.46 -83.70 -0.37 3.01 16 24 C -0.10 -1.84 9.97 -39.39 -0.39 -2.23 16 25 C -0.12 -1.82 10.04 -39.61 -0.40 -2.21 16 26 C -0.13 -1.80 10.04 -39.55 -0.40 -2.20 16 27 C -0.12 -1.73 10.04 -39.61 -0.40 -2.13 16 28 C -0.12 -2.05 9.97 -39.39 -0.39 -2.45 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.53 7.97 -51.93 -0.41 0.12 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 1.82 7.57 -51.93 -0.39 1.43 16 38 H 0.12 2.41 8.04 -51.93 -0.42 1.99 16 39 H 0.04 1.06 8.05 -51.93 -0.42 0.64 16 40 H 0.04 1.00 6.44 -51.93 -0.33 0.67 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 43 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 400.36 15.07 6.03 6.03 Total: -1.00 -31.95 400.36 -8.38 -40.33 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.00 Total: 3.40 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.23 Total: 4.65 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.45 Total: -35.91 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.62 Total: -34.14 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.95 -8.38 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744637199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.975 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds