Wall clock time and date at job start Tue Mar 31 2020 18:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47223 * 2 1 4 4 H 1.08993 * 109.46942 * 305.44238 * 3 2 1 5 5 O 1.42896 * 109.46959 * 65.44035 * 3 2 1 6 6 C 1.42910 * 114.00001 * 211.83963 * 5 3 2 7 7 C 1.50696 * 109.47075 * 185.43925 * 3 2 1 8 8 O 1.20825 * 119.99815 * 244.99722 * 7 3 2 9 9 O 1.34230 * 119.99988 * 65.00409 * 7 3 2 10 10 C 1.45206 * 117.00012 * 179.97438 * 9 7 3 11 11 C 1.50700 * 109.47150 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99993 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00028 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99803 * 4.86914 * 13 11 10 15 15 C 1.50695 * 109.47206 * 90.00137 * 14 13 11 16 16 H 1.08006 * 119.99983 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00304 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99884 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00185 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46974 * 90.00262 * 19 17 15 21 21 H 1.48500 * 109.47121 * 209.99959 * 19 17 15 22 22 H 1.48497 * 109.47357 * 330.00592 * 19 17 15 23 23 C 1.39917 * 120.00057 * 184.86906 * 13 11 10 24 24 C 1.38874 * 120.07387 * 273.68920 * 23 13 11 25 25 C 1.38109 * 119.92959 * 179.74543 * 24 23 13 26 26 C 1.38279 * 120.07398 * 0.53240 * 25 24 23 27 27 C 1.38282 * 120.13912 * 359.74320 * 26 25 24 28 28 C 1.38118 * 120.06927 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.46627 * 174.81682 * 1 2 3 30 30 H 1.08992 * 109.47158 * 294.81264 * 1 2 3 31 31 H 1.08991 * 109.46895 * 54.81992 * 1 2 3 32 32 H 1.08997 * 109.47710 * 239.99721 * 2 1 3 33 33 H 1.09006 * 109.47287 * 119.99624 * 2 1 3 34 34 H 1.08997 * 109.47169 * 184.70827 * 6 5 3 35 35 H 1.08994 * 109.46607 * 304.71387 * 6 5 3 36 36 H 1.09000 * 109.46766 * 64.71000 * 6 5 3 37 37 H 1.09002 * 109.46364 * 299.99663 * 10 9 7 38 38 H 1.08999 * 109.47239 * 59.99228 * 10 9 7 39 39 H 1.08995 * 109.46850 * 210.00358 * 14 13 11 40 40 H 1.08999 * 109.46948 * 329.99846 * 14 13 11 41 41 H 0.96993 * 120.00065 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.02936 * 0.02797 * 24 23 13 43 43 H 1.07997 * 119.96264 * 180.27736 * 25 24 23 44 44 H 1.07997 * 119.93298 * 179.72513 * 26 25 24 45 45 H 1.07994 * 119.96909 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.03070 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5994 1.9837 -0.8372 5 8 1.6709 2.0782 1.2254 6 6 1.4236 3.4803 1.1013 7 6 3.5410 1.4446 -0.1347 8 8 4.2281 1.8575 0.7694 9 8 4.1146 0.9879 -1.2590 10 6 5.5650 1.0203 -1.3193 11 6 6.0251 0.4722 -2.6455 12 8 5.2108 0.0912 -3.4596 13 7 7.3415 0.4054 -2.9270 14 6 8.3281 0.7648 -1.9054 15 6 8.6937 -0.4600 -1.1072 16 1 8.2372 -1.4112 -1.3380 17 6 9.6118 -0.3666 -0.0828 18 7 10.1682 0.7916 0.1980 19 14 10.0645 -1.8847 0.9070 20 1 11.2187 -2.5663 0.2679 21 1 10.4301 -1.4835 2.2893 22 1 8.9048 -2.8111 0.9508 23 6 7.7657 -0.0073 -4.1948 24 6 7.9261 -1.3592 -4.4691 25 6 8.3400 -1.7635 -5.7231 26 6 8.6052 -0.8234 -6.7019 27 6 8.4519 0.5238 -6.4302 28 6 8.0328 0.9344 -5.1799 29 1 -0.3633 -1.0235 -0.0928 30 1 -0.3633 0.4312 0.9327 31 1 -0.3633 0.5920 -0.8399 32 1 1.8935 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.2312 3.9039 2.0870 35 1 2.2947 3.9652 0.6610 36 1 0.5561 3.6409 0.4612 37 1 5.9101 2.0486 -1.2112 38 1 5.9759 0.4126 -0.5130 39 1 9.2205 1.1645 -2.3869 40 1 7.9052 1.5185 -1.2412 41 1 10.8138 0.8574 0.9188 42 1 7.7230 -2.0938 -3.7038 43 1 8.4606 -2.8149 -5.9384 44 1 8.9329 -1.1419 -7.6804 45 1 8.6602 1.2557 -7.1965 46 1 7.9129 1.9867 -4.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744637199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:34 Heat of formation + Delta-G solvation = -151.532048 kcal Electronic energy + Delta-G solvation = -29116.296772 eV Core-core repulsion = 24970.979364 eV Total energy + Delta-G solvation = -4145.317408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.04572 -41.31706 -39.56798 -39.00653 -37.46503 -36.82874 -34.69087 -34.64675 -31.83790 -31.75770 -30.08672 -29.12431 -28.51190 -27.09048 -25.08252 -23.90154 -23.47557 -23.19214 -21.98943 -20.68621 -19.33076 -18.83603 -18.42254 -18.27535 -17.89261 -17.44442 -17.38009 -16.91757 -16.56616 -16.32425 -16.13828 -15.59598 -15.37240 -15.12072 -14.78872 -14.54518 -14.47060 -14.30869 -14.10621 -13.93722 -13.68101 -13.45843 -13.39624 -13.07864 -13.00766 -12.72570 -12.56826 -12.55001 -12.24777 -12.14864 -12.12599 -12.03450 -11.95711 -11.79231 -11.73862 -11.10209 -10.79204 -10.67109 -9.89400 -9.84804 -9.62368 -8.30349 -6.45118 0.35054 0.49255 0.91886 1.07308 1.33460 1.36425 1.39404 1.48111 2.15611 2.35491 2.63060 2.84008 3.01605 3.38059 3.46166 3.71203 3.79266 3.89351 4.04046 4.09083 4.09960 4.26668 4.31812 4.40482 4.45022 4.47657 4.51816 4.58272 4.66505 4.78874 4.82193 4.86998 5.01846 5.08343 5.11777 5.13368 5.15714 5.40804 5.43139 5.54892 5.58166 5.65142 5.71415 5.83615 5.91506 6.10154 6.26053 6.51364 6.64072 7.04317 7.27315 8.76460 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008883 B = 0.003742 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.166960 B = 7481.401633 C = 9451.422839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.111 3.889 4 H 0.132 0.868 5 O -0.370 6.370 6 C 0.018 3.982 7 C 0.429 3.571 8 O -0.524 6.524 9 O -0.337 6.337 10 C 0.063 3.937 11 C 0.526 3.474 12 O -0.559 6.559 13 N -0.557 5.557 14 C 0.252 3.748 15 C -0.552 4.552 16 H 0.055 0.945 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.956 3.044 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.271 1.271 23 C 0.125 3.875 24 C -0.126 4.126 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.111 4.111 28 C -0.134 4.134 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.026 0.974 40 H 0.035 0.965 41 H 0.270 0.730 42 H 0.104 0.896 43 H 0.150 0.850 44 H 0.163 0.837 45 H 0.158 0.842 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.834 1.526 -7.356 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.051 3.949 4 H 0.149 0.851 5 O -0.288 6.288 6 C -0.078 4.078 7 C 0.272 3.728 8 O -0.412 6.412 9 O -0.253 6.253 10 C -0.014 4.014 11 C 0.314 3.686 12 O -0.438 6.438 13 N -0.286 5.286 14 C 0.133 3.867 15 C -0.590 4.590 16 H 0.073 0.927 17 C -0.176 4.176 18 N -0.555 5.555 19 Si 0.781 3.219 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.196 1.196 23 C 0.036 3.964 24 C -0.146 4.146 25 C -0.134 4.134 26 C -0.134 4.134 27 C -0.129 4.129 28 C -0.154 4.154 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.167 0.833 44 H 0.180 0.820 45 H 0.176 0.824 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.910 1.468 -7.186 15.726 hybrid contribution 1.125 -0.238 1.147 1.624 sum -12.785 1.231 -6.039 14.193 Atomic orbital electron populations 1.21680 0.91749 1.03265 1.02987 1.21683 0.99325 0.90808 1.03814 1.21999 0.83195 0.99116 0.90573 0.85071 1.88023 1.86920 1.23591 1.30228 1.23173 1.00298 0.79603 1.04740 1.25724 0.94616 0.73350 0.79096 1.90694 1.65774 1.43943 1.40815 1.86503 1.22053 1.76243 1.40531 1.22574 0.78232 1.03826 0.96740 1.20072 0.82202 0.78503 0.87813 1.90633 1.53327 1.49625 1.50232 1.45632 1.05514 1.65005 1.12454 1.19275 0.86696 0.95789 0.84972 1.21592 1.25391 0.95406 1.16649 0.92721 1.25644 0.95325 0.98950 0.97716 1.69992 1.28885 1.25487 1.31131 0.85573 0.78776 0.79502 0.78036 1.19518 1.20435 1.19581 1.17883 1.00184 0.93389 0.84955 1.21454 1.00077 0.94758 0.98271 1.21361 0.98729 1.01444 0.91860 1.21585 0.98949 0.92516 1.00352 1.21381 0.98542 0.97355 0.95610 1.21484 1.00796 0.99153 0.93926 0.90937 0.91875 0.91085 0.89130 0.91507 0.87685 0.94805 0.90510 0.87681 0.88303 0.95600 0.94744 0.92096 0.87771 0.83277 0.81994 0.82415 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.76 71.98 0.70 -1.37 16 2 C -0.12 -2.51 5.62 30.60 0.17 -2.34 16 3 C 0.11 2.67 2.62 29.85 0.08 2.75 16 4 H 0.13 2.34 7.80 -2.39 -0.02 2.32 16 5 O -0.37 -9.14 9.53 -129.95 -1.24 -10.37 16 6 C 0.02 0.31 10.79 113.37 1.22 1.54 16 7 C 0.43 14.56 7.27 71.23 0.52 15.08 16 8 O -0.52 -21.42 16.26 28.39 0.46 -20.95 16 9 O -0.34 -12.52 9.72 -45.07 -0.44 -12.95 16 10 C 0.06 2.59 4.40 71.24 0.31 2.90 16 11 C 0.53 23.31 7.71 87.66 0.68 23.98 16 12 O -0.56 -26.46 16.48 15.75 0.26 -26.20 16 13 N -0.56 -24.90 2.48 -635.32 -1.58 -26.48 16 14 C 0.25 12.47 4.98 85.63 0.43 12.89 16 15 C -0.55 -29.51 9.39 25.60 0.24 -29.27 16 16 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 17 C 0.02 1.33 5.46 84.65 0.46 1.80 16 18 N -0.92 -51.50 13.29 21.45 0.28 -51.22 16 19 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C 0.13 5.13 4.46 38.15 0.17 5.30 16 24 C -0.13 -4.83 9.97 22.39 0.22 -4.61 16 25 C -0.12 -3.36 10.04 22.25 0.22 -3.13 16 26 C -0.12 -2.84 10.04 22.29 0.22 -2.61 16 27 C -0.11 -2.93 10.04 22.25 0.22 -2.71 16 28 C -0.13 -4.64 9.97 22.39 0.22 -4.42 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.06 0.94 7.97 -2.39 -0.02 0.93 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 1.98 8.11 -2.39 -0.02 1.96 16 33 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 4.11 7.57 -2.39 -0.02 4.09 16 38 H 0.10 4.38 8.04 -2.39 -0.02 4.36 16 39 H 0.03 1.36 8.05 -2.39 -0.02 1.34 16 40 H 0.03 1.74 6.44 -2.39 -0.02 1.73 16 41 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 44 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 45 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 46 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -71.52 400.36 6.84 -64.68 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.96 Total: 22.79 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 6.10 Total: 15.78 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -1.29 Total: -77.70 kcal Atomic # 8 Polarization: -69.53 SS G_CDS: -0.96 Total: -70.48 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -71.52 6.84 -64.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744637199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.857 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds