Wall clock time and date at job start Tue Mar 31 2020 19:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47213 * 2 1 4 4 O 1.42899 * 109.47433 * 179.97438 * 3 2 1 5 5 C 1.35893 * 117.00392 * 179.97438 * 4 3 2 6 6 C 1.38736 * 120.05957 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94337 * 180.30421 * 6 5 4 8 8 C 1.38270 * 120.05794 * 359.46080 * 7 6 5 9 9 C 1.50697 * 119.94421 * 180.26220 * 8 7 6 10 10 C 1.53002 * 109.46967 * 270.25509 * 9 8 7 11 11 C 1.50702 * 109.46969 * 180.02562 * 10 9 8 12 12 O 1.20821 * 120.00363 * 359.97438 * 11 10 9 13 13 O 1.34235 * 119.99751 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99660 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.46929 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99731 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99885 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99862 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00227 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00178 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00090 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46975 * 90.00129 * 22 20 18 24 24 H 1.48503 * 109.47039 * 210.00493 * 22 20 18 25 25 H 1.48501 * 109.46726 * 330.00407 * 22 20 18 26 26 C 1.38259 * 120.10998 * 0.51383 * 8 7 6 27 27 C 1.38146 * 120.05869 * 359.76954 * 26 8 7 28 28 H 1.08998 * 109.47451 * 59.99451 * 1 2 3 29 29 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47061 * 300.00369 * 1 2 3 31 31 H 1.08994 * 109.47469 * 240.00013 * 2 1 3 32 32 H 1.09001 * 109.47551 * 119.99600 * 2 1 3 33 33 H 1.09002 * 109.47184 * 60.00229 * 3 2 1 34 34 H 1.09001 * 109.46987 * 299.99936 * 3 2 1 35 35 H 1.08002 * 120.02291 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.96766 * 179.69880 * 7 6 5 37 37 H 1.08999 * 109.47575 * 30.25213 * 9 8 7 38 38 H 1.09002 * 109.47295 * 150.25537 * 9 8 7 39 39 H 1.08997 * 109.47017 * 299.99496 * 10 9 8 40 40 H 1.09003 * 109.47237 * 60.00435 * 10 9 8 41 41 H 1.09000 * 109.47121 * 299.99019 * 14 13 11 42 42 H 1.08995 * 109.47447 * 59.99570 * 14 13 11 43 43 H 0.96998 * 120.00067 * 359.97438 * 17 15 14 44 44 H 0.97003 * 120.00491 * 179.97438 * 21 20 18 45 45 H 1.08006 * 119.97187 * 179.74376 * 26 8 7 46 46 H 1.07993 * 120.03340 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0859 2.6534 0.0001 6 6 5.4713 2.7274 0.0001 7 6 6.0960 3.9594 0.0060 8 6 5.3418 5.1183 0.0007 9 6 6.0260 6.4610 0.0011 10 6 6.2571 6.9152 1.4438 11 6 6.9407 8.2582 1.4443 12 8 7.2154 8.7967 0.3982 13 8 7.2454 8.8558 2.6070 14 6 7.9036 10.1478 2.5314 15 6 8.1645 10.6608 3.9243 16 8 7.8291 10.0020 4.8859 17 7 8.7715 11.8511 4.1013 18 6 9.0083 12.3180 5.3683 19 1 8.7090 11.7319 6.2246 20 6 9.6345 13.5448 5.5508 21 7 9.9993 14.2579 4.5090 22 14 9.9580 14.1808 7.2773 23 1 11.2906 13.7127 7.7356 24 1 9.9299 15.6655 7.2712 25 1 8.9104 13.6695 8.1974 26 6 3.9611 5.0473 0.0001 27 6 3.3314 3.8177 0.0001 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 6.0608 1.8224 0.0001 36 1 7.1745 4.0175 0.0110 37 1 6.9841 6.3809 -0.5123 38 1 5.3982 7.1890 -0.5128 39 1 5.2990 6.9955 1.9573 40 1 6.8850 6.1873 1.9577 41 1 8.8492 10.0432 1.9994 42 1 7.2632 10.8513 1.9995 43 1 9.0407 12.3773 3.3322 44 1 10.4361 15.1146 4.6364 45 1 3.3741 5.9540 0.0001 46 1 2.2529 3.7627 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745484193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:20 Heat of formation + Delta-G solvation = -156.598436 kcal Electronic energy + Delta-G solvation = -26547.436711 eV Core-core repulsion = 22401.899608 eV Total energy + Delta-G solvation = -4145.537103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59847 -40.24407 -38.37336 -38.04462 -36.16075 -34.65289 -33.99128 -33.55944 -31.37556 -31.33502 -29.79256 -28.25135 -27.06951 -25.04844 -24.20784 -23.41393 -21.84015 -21.34598 -20.38328 -19.56173 -18.54118 -18.06088 -17.60668 -16.73074 -16.70975 -16.30455 -16.26468 -15.75073 -15.20402 -14.88019 -14.63305 -14.55736 -14.37274 -14.24206 -13.96587 -13.77884 -13.30291 -13.29015 -12.95653 -12.81670 -12.63287 -12.41922 -12.18686 -11.93490 -11.71476 -11.67479 -11.60872 -11.55271 -11.34167 -11.12865 -11.00099 -10.97348 -10.43792 -10.39114 -10.38203 -10.27325 -9.59863 -9.29561 -8.51406 -8.37727 -8.07516 -6.49344 -3.91384 1.04692 1.09740 2.34983 2.75551 2.78615 3.13808 3.23867 3.30103 3.46343 3.74921 4.11990 4.30813 4.34176 4.49690 4.52783 4.56041 4.67037 4.78597 4.82692 4.88208 4.88743 4.89990 5.07101 5.10569 5.15771 5.18539 5.20709 5.34053 5.42412 5.42922 5.51664 5.59827 5.60112 5.65784 5.71547 5.77821 5.90201 5.99295 6.05736 6.07424 6.37665 6.47287 6.68229 7.07874 7.48362 7.87127 7.98238 8.49554 9.07879 9.40280 9.90403 10.67898 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027715 B = 0.001438 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.043598 B =19472.533159 C =20002.768323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.058 3.942 4 O -0.318 6.318 5 C 0.125 3.875 6 C -0.150 4.150 7 C -0.073 4.073 8 C -0.119 4.119 9 C -0.064 4.064 10 C -0.108 4.108 11 C 0.457 3.543 12 O -0.517 6.517 13 O -0.327 6.327 14 C 0.060 3.940 15 C 0.438 3.562 16 O -0.576 6.576 17 N -0.553 5.553 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.934 3.066 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.268 1.268 26 C -0.073 4.073 27 C -0.207 4.207 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.395 0.605 44 H 0.274 0.726 45 H 0.127 0.873 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.941 -24.096 -13.293 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.232 6.232 5 C 0.080 3.920 6 C -0.169 4.169 7 C -0.091 4.091 8 C -0.119 4.119 9 C -0.102 4.102 10 C -0.145 4.145 11 C 0.300 3.700 12 O -0.406 6.406 13 O -0.241 6.241 14 C -0.017 4.017 15 C 0.223 3.777 16 O -0.460 6.460 17 N -0.190 5.190 18 C -0.432 4.432 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.538 5.538 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.091 4.091 27 C -0.226 4.226 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.228 0.772 44 H 0.084 0.916 45 H 0.144 0.856 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.905 -24.351 -12.935 31.343 hybrid contribution 0.226 1.042 0.214 1.088 sum -14.678 -23.309 -12.721 30.341 Atomic orbital electron populations 1.21696 0.94178 1.02616 1.02293 1.21485 0.96094 0.94800 1.03749 1.22885 0.78459 0.98869 1.01500 1.86041 1.21307 1.27150 1.88680 1.19012 0.92341 0.84040 0.96575 1.20428 0.91325 0.98698 1.06429 1.20923 1.00045 0.90905 0.97262 1.19737 0.93547 0.94939 1.03682 1.20344 1.01790 0.93191 0.94844 1.21374 1.02477 0.91324 0.99364 1.23784 0.76425 0.87853 0.81905 1.90650 1.51112 1.65615 1.33218 1.86561 1.70161 1.33982 1.33404 1.22733 0.97964 0.82333 0.98688 1.19350 0.85441 0.84085 0.88849 1.90561 1.55962 1.58025 1.41470 1.41704 1.51494 1.16332 1.09494 1.19732 1.36326 1.02572 0.84576 0.87622 1.25304 0.96677 0.96081 0.99640 1.69614 1.40355 1.13912 1.29919 0.85802 0.79011 0.77687 0.81474 1.20261 1.20812 1.19286 1.20888 0.93978 0.97162 0.97082 1.21225 0.99980 0.92353 1.09022 0.92340 0.91666 0.92281 0.90840 0.90772 0.91944 0.92031 0.85198 0.85073 0.89897 0.89983 0.87524 0.87432 0.89580 0.89602 0.77165 0.91640 0.85553 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.91 37.15 0.37 -0.16 16 2 C -0.12 -0.61 6.30 -26.73 -0.17 -0.77 16 3 C 0.06 0.36 4.74 37.16 0.18 0.54 16 4 O -0.32 -2.90 10.14 -19.40 -0.20 -3.10 16 5 C 0.13 1.19 6.69 -39.21 -0.26 0.92 16 6 C -0.15 -1.36 9.99 -39.43 -0.39 -1.76 16 7 C -0.07 -0.64 9.69 -39.61 -0.38 -1.02 16 8 C -0.12 -1.08 5.13 -104.60 -0.54 -1.61 16 9 C -0.06 -0.61 4.63 -27.88 -0.13 -0.74 16 10 C -0.11 -1.15 5.79 -27.88 -0.16 -1.31 16 11 C 0.46 6.94 7.96 36.01 0.29 7.23 16 12 O -0.52 -8.74 15.73 -18.75 -0.29 -9.03 16 13 O -0.33 -6.07 9.76 -45.92 -0.45 -6.51 16 14 C 0.06 1.16 5.94 36.01 0.21 1.37 16 15 C 0.44 10.64 7.86 -10.98 -0.09 10.56 16 16 O -0.58 -16.14 16.08 -14.11 -0.23 -16.37 16 17 N -0.55 -14.05 5.29 -10.96 -0.06 -14.10 16 18 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 19 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 22 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 26 C -0.07 -0.63 9.69 -39.61 -0.38 -1.01 16 27 C -0.21 -1.77 9.04 -39.43 -0.36 -2.13 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.20 8.14 -51.92 -0.42 -0.23 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 34 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 38 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 39 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.51 8.13 -51.93 -0.42 1.08 16 42 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 43 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 46 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -33.41 397.98 -8.45 -41.87 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.87 Total: 6.80 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.06 Total: 2.14 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.67 Total: -37.49 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.17 Total: -35.02 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.41 -8.45 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745484193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.733 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds