Wall clock time and date at job start Tue Mar 31 2020 19:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47213 * 2 1 4 4 O 1.42899 * 109.47433 * 179.97438 * 3 2 1 5 5 C 1.35893 * 117.00392 * 179.97438 * 4 3 2 6 6 C 1.38736 * 120.05957 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94337 * 180.30421 * 6 5 4 8 8 C 1.38270 * 120.05794 * 359.46080 * 7 6 5 9 9 C 1.50697 * 119.94421 * 180.26220 * 8 7 6 10 10 C 1.53002 * 109.46967 * 270.25509 * 9 8 7 11 11 C 1.50702 * 109.46969 * 180.02562 * 10 9 8 12 12 O 1.20821 * 120.00363 * 359.97438 * 11 10 9 13 13 O 1.34235 * 119.99751 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99660 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.46929 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99731 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99885 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99862 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00227 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00178 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00090 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46975 * 90.00129 * 22 20 18 24 24 H 1.48503 * 109.47039 * 210.00493 * 22 20 18 25 25 H 1.48501 * 109.46726 * 330.00407 * 22 20 18 26 26 C 1.38259 * 120.10998 * 0.51383 * 8 7 6 27 27 C 1.38146 * 120.05869 * 359.76954 * 26 8 7 28 28 H 1.08998 * 109.47451 * 59.99451 * 1 2 3 29 29 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47061 * 300.00369 * 1 2 3 31 31 H 1.08994 * 109.47469 * 240.00013 * 2 1 3 32 32 H 1.09001 * 109.47551 * 119.99600 * 2 1 3 33 33 H 1.09002 * 109.47184 * 60.00229 * 3 2 1 34 34 H 1.09001 * 109.46987 * 299.99936 * 3 2 1 35 35 H 1.08002 * 120.02291 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.96766 * 179.69880 * 7 6 5 37 37 H 1.08999 * 109.47575 * 30.25213 * 9 8 7 38 38 H 1.09002 * 109.47295 * 150.25537 * 9 8 7 39 39 H 1.08997 * 109.47017 * 299.99496 * 10 9 8 40 40 H 1.09003 * 109.47237 * 60.00435 * 10 9 8 41 41 H 1.09000 * 109.47121 * 299.99019 * 14 13 11 42 42 H 1.08995 * 109.47447 * 59.99570 * 14 13 11 43 43 H 0.96998 * 120.00067 * 359.97438 * 17 15 14 44 44 H 0.97003 * 120.00491 * 179.97438 * 21 20 18 45 45 H 1.08006 * 119.97187 * 179.74376 * 26 8 7 46 46 H 1.07993 * 120.03340 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0859 2.6534 0.0001 6 6 5.4713 2.7274 0.0001 7 6 6.0960 3.9594 0.0060 8 6 5.3418 5.1183 0.0007 9 6 6.0260 6.4610 0.0011 10 6 6.2571 6.9152 1.4438 11 6 6.9407 8.2582 1.4443 12 8 7.2154 8.7967 0.3982 13 8 7.2454 8.8558 2.6070 14 6 7.9036 10.1478 2.5314 15 6 8.1645 10.6608 3.9243 16 8 7.8291 10.0020 4.8859 17 7 8.7715 11.8511 4.1013 18 6 9.0083 12.3180 5.3683 19 1 8.7090 11.7319 6.2246 20 6 9.6345 13.5448 5.5508 21 7 9.9993 14.2579 4.5090 22 14 9.9580 14.1808 7.2773 23 1 11.2906 13.7127 7.7356 24 1 9.9299 15.6655 7.2712 25 1 8.9104 13.6695 8.1974 26 6 3.9611 5.0473 0.0001 27 6 3.3314 3.8177 0.0001 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 6.0608 1.8224 0.0001 36 1 7.1745 4.0175 0.0110 37 1 6.9841 6.3809 -0.5123 38 1 5.3982 7.1890 -0.5128 39 1 5.2990 6.9955 1.9573 40 1 6.8850 6.1873 1.9577 41 1 8.8492 10.0432 1.9994 42 1 7.2632 10.8513 1.9995 43 1 9.0407 12.3773 3.3322 44 1 10.4361 15.1146 4.6364 45 1 3.3741 5.9540 0.0001 46 1 2.2529 3.7627 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745484193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:19 Heat of formation + Delta-G solvation = -174.843664 kcal Electronic energy + Delta-G solvation = -26548.227883 eV Core-core repulsion = 22401.899608 eV Total energy + Delta-G solvation = -4146.328275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67823 -41.10897 -40.05110 -38.91358 -37.54586 -36.03187 -35.18956 -34.25468 -33.41580 -31.96512 -30.78519 -29.63097 -27.59538 -26.67024 -25.36909 -23.97122 -22.48982 -22.06187 -21.44320 -21.35072 -20.07193 -19.15596 -18.85663 -17.89296 -17.85790 -17.25835 -17.21284 -17.05977 -16.49924 -16.04186 -15.97372 -15.74065 -15.30870 -15.08613 -14.95540 -14.62918 -14.60624 -14.23690 -13.97876 -13.66083 -13.56356 -13.45226 -13.38284 -13.02526 -12.94426 -12.93466 -12.47680 -12.35379 -12.21901 -12.11973 -12.09960 -12.00651 -11.82883 -11.61952 -11.58697 -11.57142 -11.47348 -10.51037 -10.11844 -9.93844 -9.05000 -8.52439 -6.03223 0.39831 0.42157 1.14915 1.36174 1.40247 1.48553 1.59393 1.87172 2.23203 2.30348 2.78352 3.06712 3.13201 3.62704 3.80269 3.94144 3.94850 3.96985 3.99853 4.01204 4.14338 4.18829 4.22915 4.27680 4.29389 4.37212 4.47603 4.54289 4.54800 4.60628 4.75455 4.82308 4.90324 5.11180 5.12667 5.15571 5.17160 5.30281 5.35915 5.36758 5.40469 5.42646 5.70580 5.85169 5.89129 6.46024 6.47032 6.68253 7.02923 7.39879 7.93560 8.64552 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027715 B = 0.001438 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.043598 B =19472.533159 C =20002.768323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.052 3.948 4 O -0.334 6.334 5 C 0.112 3.888 6 C -0.164 4.164 7 C -0.076 4.076 8 C -0.126 4.126 9 C -0.055 4.055 10 C -0.100 4.100 11 C 0.459 3.541 12 O -0.534 6.534 13 O -0.347 6.347 14 C 0.071 3.929 15 C 0.435 3.565 16 O -0.619 6.619 17 N -0.557 5.557 18 C -0.340 4.340 19 H 0.084 0.916 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.998 3.002 23 H -0.269 1.269 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.078 4.078 27 C -0.212 4.212 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.400 0.600 44 H 0.281 0.719 45 H 0.141 0.859 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.503 -24.259 -13.633 31.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.022 4.022 4 O -0.248 6.248 5 C 0.067 3.933 6 C -0.182 4.182 7 C -0.094 4.094 8 C -0.126 4.126 9 C -0.093 4.093 10 C -0.137 4.137 11 C 0.303 3.697 12 O -0.424 6.424 13 O -0.263 6.263 14 C -0.006 4.006 15 C 0.222 3.778 16 O -0.505 6.505 17 N -0.195 5.195 18 C -0.469 4.469 19 H 0.102 0.898 20 C -0.208 4.208 21 N -0.555 5.555 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.096 4.096 27 C -0.230 4.230 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.234 0.766 44 H 0.090 0.910 45 H 0.159 0.841 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.467 -24.512 -13.317 31.897 hybrid contribution 0.366 1.032 0.257 1.125 sum -15.101 -23.480 -13.059 30.820 Atomic orbital electron populations 1.21687 0.92975 1.03174 1.02664 1.21493 0.97043 0.93976 1.03403 1.23092 0.77172 0.99843 1.02142 1.86025 1.22824 1.27276 1.88691 1.19242 0.92745 0.84503 0.96779 1.20629 0.91590 0.99231 1.06757 1.21115 1.00858 0.90676 0.96787 1.19725 0.93820 0.94626 1.04422 1.20253 1.01752 0.93389 0.93867 1.21529 1.02833 0.88771 1.00616 1.24611 0.75758 0.88633 0.80651 1.90641 1.51943 1.66308 1.33512 1.86573 1.70556 1.33618 1.35512 1.22487 0.99597 0.83481 0.95041 1.20164 0.83859 0.83216 0.90576 1.90524 1.57393 1.59037 1.43595 1.41740 1.51752 1.16917 1.09073 1.19736 1.38502 1.03624 0.85053 0.89786 1.26112 0.95571 0.95544 1.03567 1.69671 1.40009 1.14228 1.31602 0.84861 0.78844 0.77559 0.76672 1.19447 1.19384 1.19559 1.21117 0.94053 0.97810 0.96605 1.21431 1.00895 0.92034 1.08654 0.91864 0.91042 0.92005 0.91093 0.91235 0.91380 0.91216 0.84570 0.83711 0.90086 0.90128 0.86030 0.85983 0.87671 0.87672 0.76570 0.90954 0.84120 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 71.98 0.71 -0.14 16 2 C -0.12 -1.10 6.30 30.59 0.19 -0.90 16 3 C 0.05 0.60 4.74 71.98 0.34 0.94 16 4 O -0.33 -5.92 10.14 -92.34 -0.94 -6.86 16 5 C 0.11 2.04 6.69 22.51 0.15 2.19 16 6 C -0.16 -2.84 9.99 22.37 0.22 -2.62 16 7 C -0.08 -1.23 9.69 22.25 0.22 -1.02 16 8 C -0.13 -2.07 5.13 -19.85 -0.10 -2.18 16 9 C -0.06 -0.96 4.63 29.85 0.14 -0.82 16 10 C -0.10 -1.96 5.79 29.85 0.17 -1.78 16 11 C 0.46 13.28 7.96 71.24 0.57 13.84 16 12 O -0.53 -17.30 15.73 21.98 0.35 -16.95 16 13 O -0.35 -12.59 9.76 -45.11 -0.44 -13.03 16 14 C 0.07 2.68 5.94 71.24 0.42 3.10 16 15 C 0.44 21.35 7.86 87.66 0.69 22.04 16 16 O -0.62 -35.39 16.08 15.73 0.25 -35.13 16 17 N -0.56 -28.67 5.29 -306.98 -1.62 -30.29 16 18 C -0.34 -19.15 9.68 84.04 0.81 -18.33 16 19 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 20 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 21 N -0.92 -48.55 13.05 21.66 0.28 -48.26 16 22 Si 1.00 41.98 29.55 68.60 2.03 44.01 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 C -0.08 -1.21 9.69 22.25 0.22 -1.00 16 27 C -0.21 -3.32 9.04 22.37 0.20 -3.12 16 28 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 34 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 38 H 0.08 1.42 8.04 -2.39 -0.02 1.41 16 39 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.11 3.55 8.13 -2.39 -0.02 3.53 16 42 H 0.11 3.55 8.13 -2.39 -0.02 3.53 16 43 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 44 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 45 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.14 1.65 6.30 -2.91 -0.02 1.64 16 Total: -1.00 -71.38 397.98 5.59 -65.79 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.26 Total: 30.43 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.42 Total: 10.30 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -1.34 Total: -78.56 kcal Atomic # 8 Polarization: -71.19 SS G_CDS: -0.78 Total: -71.97 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -71.38 5.59 -65.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745484193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.052 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds