Wall clock time and date at job start Tue Mar 31 2020 19:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47455 * 2 1 4 4 O 1.42904 * 109.47001 * 120.00361 * 2 1 3 5 5 C 1.35901 * 117.00370 * 84.87960 * 4 2 1 6 6 C 1.38760 * 120.05308 * 354.57694 * 5 4 2 7 7 C 1.38114 * 119.94087 * 180.02562 * 6 5 4 8 8 C 1.38289 * 120.05970 * 359.97438 * 7 6 5 9 9 C 1.38247 * 120.11035 * 0.02562 * 8 7 6 10 10 C 1.38164 * 120.05426 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.02785 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47282 * 265.02200 * 11 10 9 13 13 O 1.20823 * 119.99907 * 0.02562 * 12 11 10 14 14 O 1.34223 * 120.00032 * 180.02562 * 12 11 10 15 15 C 1.45203 * 117.00112 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.47363 * 180.02562 * 15 14 12 17 17 O 1.21280 * 119.99736 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00153 * 179.97438 * 16 15 14 19 19 C 1.46503 * 120.00164 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47067 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00520 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99831 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00373 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00137 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47433 * 59.99334 * 24 22 20 26 26 H 1.48494 * 109.47424 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46855 * 299.99691 * 24 22 20 28 28 H 1.08998 * 109.46735 * 300.00082 * 1 2 3 29 29 H 1.09002 * 109.46822 * 60.00030 * 1 2 3 30 30 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47156 * 240.00126 * 2 1 3 32 32 H 1.08999 * 109.47374 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46802 * 300.00281 * 3 2 1 34 34 H 1.09003 * 109.46835 * 59.99930 * 3 2 1 35 35 H 1.08000 * 120.02791 * 0.02562 * 6 5 4 36 36 H 1.08005 * 119.97048 * 179.72720 * 7 6 5 37 37 H 1.07995 * 119.94773 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.97290 * 179.97438 * 9 8 7 39 39 H 1.08996 * 109.46713 * 25.02384 * 11 10 9 40 40 H 1.09004 * 109.46871 * 145.02280 * 11 10 9 41 41 H 1.09002 * 109.46456 * 299.99658 * 15 14 12 42 42 H 1.09001 * 109.47233 * 59.99273 * 15 14 12 43 43 H 0.97001 * 119.99813 * 0.02562 * 18 16 15 44 44 H 1.08996 * 109.46976 * 300.00167 * 19 18 16 45 45 H 1.09002 * 109.46739 * 60.00336 * 19 18 16 46 46 H 0.96994 * 120.00734 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1101 -2.0271 1.0987 6 6 1.6558 -2.7032 -0.0246 7 6 1.7620 -4.0787 -0.0911 8 6 2.3209 -4.7819 0.9603 9 6 2.7742 -4.1106 2.0805 10 6 2.6703 -2.7347 2.1520 11 6 3.1642 -2.0036 3.3737 12 6 2.0159 -1.7799 4.3237 13 8 0.9101 -2.1743 4.0383 14 8 2.2217 -1.1427 5.4870 15 6 1.0701 -0.9632 6.3530 16 6 1.4901 -0.2330 7.6025 17 8 2.6463 0.1026 7.7490 18 7 0.5809 0.0471 8.5572 19 6 0.9894 0.7565 9.7722 20 6 -0.2059 0.9428 10.6708 21 1 -1.1731 0.5706 10.3672 22 6 -0.0648 1.5896 11.8803 23 7 1.1129 2.0434 12.2500 24 14 -1.5462 1.8201 12.9947 25 1 -2.1019 0.4924 13.3604 26 1 -1.1323 2.5392 14.2261 27 1 -2.5823 2.6113 12.2834 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.2196 -2.1544 -0.8462 36 1 1.4045 -4.6059 -0.9634 37 1 2.4026 -5.8575 0.9065 38 1 3.2099 -4.6621 2.9005 39 1 3.9332 -2.5981 3.8667 40 1 3.5829 -1.0419 3.0770 41 1 0.3101 -0.3817 5.8309 42 1 0.6615 -1.9376 6.6210 43 1 -0.3437 -0.2217 8.4401 44 1 1.7490 0.1749 10.2944 45 1 1.3982 1.7307 9.5040 46 1 1.2122 2.4981 13.1010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748952242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:38 Heat of formation + Delta-G solvation = -144.488569 kcal Electronic energy + Delta-G solvation = -28038.354441 eV Core-core repulsion = 23893.342462 eV Total energy + Delta-G solvation = -4145.011980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96366 -40.19010 -38.68118 -37.99512 -36.24803 -34.22166 -33.85304 -32.85809 -32.39080 -30.30843 -29.40160 -27.91205 -27.59933 -26.43778 -23.74496 -22.87135 -22.23565 -21.13328 -20.65803 -19.89807 -18.46644 -17.72751 -17.43172 -16.80626 -16.31247 -16.16887 -15.86917 -15.69931 -15.36156 -14.99699 -14.95633 -14.71616 -14.28664 -14.13728 -13.66634 -13.47294 -13.14287 -13.08870 -12.92952 -12.68975 -12.56916 -12.36045 -12.30489 -12.13571 -11.96844 -11.74336 -11.66164 -11.49231 -11.10184 -11.02462 -10.93530 -10.89416 -10.61054 -10.51583 -10.33655 -9.44429 -9.19960 -9.11504 -8.76618 -8.41050 -7.96630 -6.18400 -4.25853 0.97071 1.18349 2.26085 2.56137 2.86970 3.21585 3.24970 3.29753 3.31262 3.50602 4.07236 4.30440 4.34987 4.39419 4.46789 4.53371 4.66307 4.74199 4.86728 4.95597 4.97647 5.17023 5.17519 5.20064 5.23827 5.25312 5.30219 5.32185 5.37027 5.38481 5.40014 5.52456 5.71071 5.75261 5.81565 6.03434 6.12984 6.24140 6.43793 6.52391 7.14993 7.24484 7.33460 7.47478 7.61301 7.80655 7.93360 8.52367 8.72781 8.98923 9.40394 10.91691 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.002025 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.667684 B =13822.694368 C =14494.490311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.307 6.307 5 C 0.152 3.848 6 C -0.212 4.212 7 C -0.077 4.077 8 C -0.159 4.159 9 C -0.065 4.065 10 C -0.110 4.110 11 C -0.063 4.063 12 C 0.464 3.536 13 O -0.504 6.504 14 O -0.330 6.330 15 C 0.050 3.950 16 C 0.500 3.500 17 O -0.534 6.534 18 N -0.707 5.707 19 C 0.251 3.749 20 C -0.545 4.545 21 H 0.064 0.936 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.905 3.095 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.393 0.607 44 H 0.029 0.971 45 H 0.029 0.971 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 -9.878 -29.081 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.220 6.220 5 C 0.107 3.893 6 C -0.231 4.231 7 C -0.095 4.095 8 C -0.177 4.177 9 C -0.083 4.083 10 C -0.111 4.111 11 C -0.101 4.101 12 C 0.307 3.693 13 O -0.392 6.392 14 O -0.245 6.245 15 C -0.028 4.028 16 C 0.283 3.717 17 O -0.412 6.412 18 N -0.358 5.358 19 C 0.131 3.869 20 C -0.584 4.584 21 H 0.082 0.918 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.225 0.775 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.128 -9.467 -28.682 30.279 hybrid contribution -1.607 -0.061 0.419 1.662 sum 0.521 -9.528 -28.263 29.831 Atomic orbital electron populations 1.22389 0.94919 1.03231 1.03312 1.22466 0.94517 0.93758 0.87076 1.21870 1.02183 0.93366 1.03317 1.86144 1.80721 1.16204 1.38976 1.18743 0.94043 0.82695 0.93846 1.21234 1.07303 0.95661 0.98861 1.20950 0.96860 0.93333 0.98375 1.21001 1.02302 1.00035 0.94387 1.20897 0.97337 0.92222 0.97866 1.18635 1.04807 0.93304 0.94319 1.20075 0.95130 1.03819 0.91061 1.23617 0.90457 0.74430 0.80816 1.90662 1.25848 1.47521 1.75171 1.86559 1.38843 1.69998 1.29125 1.22825 0.87346 1.02255 0.90365 1.19907 0.86747 0.80951 0.84124 1.90704 1.18403 1.53031 1.79012 1.46365 1.11082 1.57988 1.20328 1.19164 0.96354 0.91983 0.79367 1.21172 0.94702 1.39152 1.03351 0.91834 1.24952 0.96384 0.94984 0.97669 1.69957 1.22655 1.37292 1.22293 0.86449 0.82179 0.78424 0.79702 1.20037 1.21050 1.20041 0.91173 0.91017 0.91780 0.90926 0.91525 0.90475 0.91168 0.85268 0.85853 0.85763 0.85214 0.86643 0.86345 0.88696 0.88655 0.77458 0.95269 0.95272 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.17 37.16 0.34 -1.04 16 2 C 0.08 0.62 2.85 -26.73 -0.08 0.54 16 3 C -0.15 -1.01 9.56 37.16 0.36 -0.65 16 4 O -0.31 -3.40 8.94 -19.43 -0.17 -3.57 16 5 C 0.15 1.68 6.57 -39.21 -0.26 1.42 16 6 C -0.21 -1.94 8.24 -39.43 -0.32 -2.26 16 7 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 8 C -0.16 -1.34 10.04 -39.56 -0.40 -1.73 16 9 C -0.07 -0.62 9.68 -39.61 -0.38 -1.00 16 10 C -0.11 -1.21 4.39 -104.47 -0.46 -1.67 16 11 C -0.06 -0.69 5.66 -29.03 -0.16 -0.86 16 12 C 0.46 6.75 7.95 36.01 0.29 7.03 16 13 O -0.50 -8.30 15.78 -18.75 -0.30 -8.59 16 14 O -0.33 -5.48 9.75 -45.89 -0.45 -5.92 16 15 C 0.05 0.80 5.94 36.00 0.21 1.01 16 16 C 0.50 10.29 7.91 -10.99 -0.09 10.21 16 17 O -0.53 -13.30 16.50 -14.10 -0.23 -13.54 16 18 N -0.71 -14.93 5.55 -61.48 -0.34 -15.27 16 19 C 0.25 6.65 5.43 -5.19 -0.03 6.62 16 20 C -0.55 -14.73 9.28 -34.44 -0.32 -15.05 16 21 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 24 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.53 6.91 -51.93 -0.36 0.17 16 31 H 0.07 0.47 6.32 -51.93 -0.33 0.14 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.13 0.93 5.43 -52.49 -0.28 0.65 16 36 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.97 8.05 -51.93 -0.42 0.56 16 40 H 0.12 1.21 7.69 -51.93 -0.40 0.81 16 41 H 0.10 1.36 8.13 -51.93 -0.42 0.94 16 42 H 0.10 1.34 8.13 -51.93 -0.42 0.92 16 43 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -35.18 394.89 -8.35 -43.53 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.74 Total: 3.67 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.80 Total: 3.21 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.40 Total: -40.51 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.15 Total: -31.63 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.18 -8.35 -43.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748952242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.958 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds